Геном прокариот/Материалы:NC 009428

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009428            3217726 bp    DNA     circular BCT 21-JUN-2007
   DEFINITION  Rhodobacter sphaeroides ATCC 17025, complete genome.
   ACCESSION   NC_009428
   VERSION     NC_009428.1  GI:146276058
   KEYWORDS    .
   SOURCE      Rhodobacter sphaeroides ATCC 17025
     ORGANISM  Rhodobacter sphaeroides ATCC 17025
               Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
               Rhodobacteraceae; Rhodobacter.
   REFERENCE   1  (bases 1 to 3217726)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chertkov,O., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Kim,E., Richardson,P.,
               Mackenzie,C., Choudhary,M., Donohue,T.J. and Kaplan,S.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Rhodobacter sphaeroides ATCC
               17025
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3217726)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (08-MAY-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3217726)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chertkov,O., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Kim,E. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (10-APR-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000661.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000699
               Source DNA and bacteria available from Samuel Kaplan
               (Samuel.Kaplan@uth.tmc.edu)
               Contacts: Paul Richardson (Microbes@cuba.jgi-psf.org)
                         Samuel Kaplan (Samuel.Kaplan@uth.tmc.edu)
                         Ronald C. Mackenzie (Ronald.C.Mackenzie@uth.tmc.edu)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               Additional Notes: This genome has an unresolved number of a 45kb
               repeat. We estimate that there are 2 copies of this repeat based on
               the large coverage by draft reads and multiple links of 35 and 6 kb
               libraries from unique to repeat.  We don't have subclones that span
               this area from unique to unique. We could not produce long range
               PCR for this area. It is possible that this genome may be
               rearranged because of this 45 kb repeat.
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
100952	101027	+	76	146276058	Rsph17025_R0001	-	^{02 Ala tRNA}
163765	163841	+	77	146276058	Rsph17025_R0002	-	^{03 Pro tRNA}
312778	312854	+	77	146276058	Rsph17025_R0003	-	^{11 Arg tRNA}
422206	422282	+	77	146276058	Rsph17025_R0004	-	^{09 His tRNA}
477468	477544	-	77	146276058	Rsph17025_R0005	-	^{11 Arg tRNA}
522942	523042	-	101	146276058	Rsph17025_R0006	-	SRP RNA; RNA component of signal recognition particle
591700	591774	-	75	146276058	Rsph17025_R0007	-	^{12 Thr tRNA}
600425	600500	+	76	146276058	Rsph17025_R0008	-	^{17 Phe tRNA}
669210	669296	+	87	146276058	Rsph17025_R0009	-	^{15 Leu tRNA}
842089	842163	+	75	146276058	Rsph17025_R0010	-	^{04 Glu tRNA}
848920	848994	-	75	146276058	Rsph17025_R0011	-	^{04 Glu tRNA}
906177	906250	+	74	146276058	Rsph17025_R0012	-	^{01 Gly tRNA}
929780	929863	+	84	146276058	Rsph17025_R0013	-	^{15 Leu tRNA}
1089809	1089883	+	75	146276058	Rsph17025_R0014	-	^{13 Val tRNA}
1305837	1305927	+	91	146276058	Rsph17025_R0015	-	^{08 Ser tRNA}
1355467	1355542	+	76	146276058	Rsph17025_R0016	-	^{02 Ala tRNA}
1383135	1383219	+	85	146276058	Rsph17025_R0017	-	^{15 Leu tRNA}
1403236	1403309	+	74	146276058	Rsph17025_R0018	-	^{19 Cys tRNA}
1441592	1441668	+	77	146276058	Rsph17025_R0019	-	^{11 Arg tRNA}
1512266	1512340	+	75	146276058	Rsph17025_R0020	-	^{12 Thr tRNA}
1552603	1552677	+	75	146276058	Rsph17025_R0021	-	^{05 Gln tRNA}
1552767	1552841	+	75	146276058	Rsph17025_R0022	-	^{05 Gln tRNA}
1764088	1764162	+	75	146276058	Rsph17025_R0023	-	^{01 Gly tRNA}
1770068	1770143	+	76	146276058	Rsph17025_R0024	-	^{13 Val tRNA}
1850753	1850842	+	90	146276058	Rsph17025_R0025	-	^{08 Ser tRNA}
1913839	1913915	-	77	146276058	Rsph17025_R0026	-	^{06 Asp tRNA}
1913950	1914026	-	77	146276058	Rsph17025_R0027	-	^{06 Asp tRNA}
1959275	1959352	+	78	146276058	Rsph17025_R0028	-	^{03 Pro tRNA}
2112636	2112719	+	84	146276058	Rsph17025_R0029	-	^{15 Leu tRNA}
2166202	2166291	-	90	146276058	Rsph17025_R0030	-	^{08 Ser tRNA}
2259173	2259518	-	346	146276058	Rsph17025_R0031	-	RNA component of RNaseP
2591284	2591359	-	76	146276058	Rsph17025_R0032	-	^{20 Trp tRNA}
2622537	2622612	+	76	146276058	Rsph17025_R0033	-	^{11 Arg tRNA}
2819993	2820077	-	85	146276058	Rsph17025_R0034	-	^{15 Leu tRNA}
2851659	2851733	-	75	146276058	Rsph17025_R0035	-	^{13 Val tRNA}
2863314	2864773	+	1460	146276058	Rsph17025_R0036	-	16S ribosomal RNA
2864994	2865070	+	77	146276058	Rsph17025_R0037	-	^{14 Ile tRNA}
2865157	2865232	+	76	146276058	Rsph17025_R0038	-	^{02 Ala tRNA}
2865476	2868396	+	2921	146276058	Rsph17025_R0039	-	23S ribosomal RNA
2868495	2868612	+	118	146276058	Rsph17025_R0040	-	5S ribosomal RNA
2868682	2868758	+	77	146276058	Rsph17025_R0041	-	^{16 Met tRNA}
2968016	2968091	-	76	146276058	Rsph17025_R0042	-	^{12 Thr tRNA}
3044536	3044610	-	75	146276058	Rsph17025_R0043	-	^{10 Lys tRNA}
3069597	3069673	+	77	146276058	Rsph17025_R0044	-	^{03 Pro tRNA}
3137299	3137374	-	76	146276058	Rsph17025_R0045	-	^{16 Met tRNA}