Материалы:NC 009438

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009438            4659220 bp    DNA     circular BCT 14-AUG-2007
   DEFINITION  Shewanella putrefaciens CN-32, complete genome.
   ACCESSION   NC_009438
   VERSION     NC_009438.1  GI:146291111
   KEYWORDS    .
   SOURCE      Shewanella putrefaciens CN-32
     ORGANISM  Shewanella putrefaciens CN-32
               Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
               Shewanellaceae; Shewanella.
   REFERENCE   1  (bases 1 to 4659220)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Romine,M.F.,
               Fredrickson,J., Tiedje,J. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Shewanella putrefaciens CN-32
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4659220)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (08-MAY-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4659220)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Romine,M.F.,
               Fredrickson,J., Tiedje,J. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (17-APR-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000681.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3634498
               Source DNA and bacteria available from Jim Fredrickson
               (Jim.fredrickson@pnl.gov)
               Contacts: Shewanella Federation (shewanella.org)
                         James Tiedje (tiedjej@msu.edu)
                         Jim Fredrickson (Jim.fredrickson@pnl.gov)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376)
               Additional Notes: This genome contains a Tandem repeat. The repeat
               unit is 552 bps in length.  Each copy of the repeat unit differs by
               3 SNPs. We have resolved this tandem making the assumption that
               there are 14 copies.  However, it is unresolved on the number of
               copies. The tandem is located from 4171003-4178703.
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
38741	40295	+	1555	146291111	Sputcn32_R0001	-	16S ribosomal RNA
40660	43552	+	2893	146291111	Sputcn32_R0002	-	23S ribosomal RNA
43780	43900	+	121	146291111	Sputcn32_R0003	-	5S ribosomal RNA
43935	44011	+	77	146291111	Sputcn32_R0004	-	^{06 Asp tRNA}
373081	374635	+	1555	146291111	Sputcn32_R0005	-	16S ribosomal RNA
374951	377843	+	2893	146291111	Sputcn32_R0006	-	23S ribosomal RNA
378071	378191	+	121	146291111	Sputcn32_R0007	-	5S ribosomal RNA
378226	378302	+	77	146291111	Sputcn32_R0008	-	^{06 Asp tRNA}
536866	538420	+	1555	146291111	Sputcn32_R0009	-	16S ribosomal RNA
538651	538727	+	77	146291111	Sputcn32_R0010	-	^{14 Ile tRNA}
538866	538941	+	76	146291111	Sputcn32_R0011	-	^{02 Ala tRNA}
539233	542125	+	2893	146291111	Sputcn32_R0012	-	23S ribosomal RNA
542303	542423	+	121	146291111	Sputcn32_R0013	-	5S ribosomal RNA
542495	542570	+	76	146291111	Sputcn32_R0014	-	^{12 Thr tRNA}
542606	542725	+	120	146291111	Sputcn32_R0015	-	5S ribosomal RNA
863902	863988	-	87	146291111	Sputcn32_R0016	-	^{15 Leu tRNA}
1133871	1133957	-	87	146291111	Sputcn32_R0018	-	^{15 Leu tRNA}
1134026	1134112	-	87	146291111	Sputcn32_R0019	-	^{15 Leu tRNA}
1134167	1134242	-	76	146291111	Sputcn32_R0020	-	^{17 Phe tRNA}
1142071	1143625	+	1555	146291111	Sputcn32_R0021	-	16S ribosomal RNA
1143941	1146833	+	2893	146291111	Sputcn32_R0022	-	23S ribosomal RNA
1147017	1147136	+	120	146291111	Sputcn32_R0023	-	5S ribosomal RNA
1242577	1242653	-	77	146291111	Sputcn32_R0024	-	^{16 Met tRNA}
1371225	1371577	-	353	146291111	Sputcn32_R0025	-	tmRNA
1698077	1698153	+	77	146291111	Sputcn32_R0026	-	^{03 Pro tRNA}
1698263	1698339	+	77	146291111	Sputcn32_R0027	-	^{11 Arg tRNA}
1698349	1698424	+	76	146291111	Sputcn32_R0028	-	^{09 His tRNA}
1722162	1722278	+	117	146291111	Sputcn32_R0029	-	SRP RNA; RNA component of signal recognition particle
1832865	1832940	+	76	146291111	Sputcn32_R0030	-	^{10 Lys tRNA}
1833000	1833075	+	76	146291111	Sputcn32_R0031	-	^{10 Lys tRNA}
1833114	1833189	+	76	146291111	Sputcn32_R0032	-	^{10 Lys tRNA}
1833248	1833323	+	76	146291111	Sputcn32_R0033	-	^{10 Lys tRNA}
1833380	1833455	+	76	146291111	Sputcn32_R0034	-	^{10 Lys tRNA}
1833514	1833589	+	76	146291111	Sputcn32_R0035	-	^{10 Lys tRNA}
1858117	1858193	-	77	146291111	Sputcn32_R0036	-	^{16 Met tRNA}
1858334	1858410	-	77	146291111	Sputcn32_R0037	-	^{16 Met tRNA}
1858551	1858627	-	77	146291111	Sputcn32_R0038	-	^{16 Met tRNA}
1858669	1858745	-	77	146291111	Sputcn32_R0039	-	^{16 Met tRNA}
1868188	1868278	+	91	146291111	Sputcn32_R0040	-	^{08 Ser tRNA}
1868623	1868713	+	91	146291111	Sputcn32_R0041	-	^{08 Ser tRNA}
1872487	1872562	+	76	146291111	Sputcn32_R0042	-	^{01 Gly tRNA}
1872616	1872689	+	74	146291111	Sputcn32_R0043	-	^{19 Cys tRNA}
1872740	1872826	+	87	146291111	Sputcn32_R0044	-	^{15 Leu tRNA}
1872957	1873043	+	87	146291111	Sputcn32_R0045	-	^{15 Leu tRNA}
2028303	2028379	+	77	146291111	Sputcn32_R0046	-	^{06 Asp tRNA}
2028530	2028606	+	77	146291111	Sputcn32_R0047	-	^{06 Asp tRNA}
2064592	2064679	+	88	146291111	Sputcn32_R0048	-	^{08 Ser tRNA}
2117079	2117154	-	76	146291111	Sputcn32_R0049	-	^{07 Asn tRNA}
2117201	2117276	-	76	146291111	Sputcn32_R0050	-	^{07 Asn tRNA}
2117320	2117395	-	76	146291111	Sputcn32_R0051	-	^{07 Asn tRNA}
2117439	2117514	-	76	146291111	Sputcn32_R0052	-	^{07 Asn tRNA}
2117576	2117651	-	76	146291111	Sputcn32_R0053	-	^{07 Asn tRNA}
2122983	2123067	-	85	146291111	Sputcn32_R0054	-	^{18 Tyr tRNA}
2123170	2123254	-	85	146291111	Sputcn32_R0055	-	^{18 Tyr tRNA}
2123310	2123394	-	85	146291111	Sputcn32_R0056	-	^{18 Tyr tRNA}
2164552	2164627	+	76	146291111	Sputcn32_R0057	-	^{01 Gly tRNA}
2164681	2164754	+	74	146291111	Sputcn32_R0058	-	^{19 Cys tRNA}
2164805	2164891	+	87	146291111	Sputcn32_R0059	-	^{15 Leu tRNA}
2284957	2285047	-	91	146291111	Sputcn32_R0060	-	^{08 Ser tRNA}
2306135	2306211	+	77	146291111	Sputcn32_R0061	-	^{13 Val tRNA}
2306261	2306337	+	77	146291111	Sputcn32_R0062	-	^{13 Val tRNA}
2642147	2642223	-	77	146291111	Sputcn32_R0063	-	^{03 Pro tRNA}
2711347	2711467	-	121	146291111	Sputcn32_R0064	-	5S ribosomal RNA
2711688	2714580	-	2893	146291111	Sputcn32_R0065	-	23S ribosomal RNA
2715020	2715095	-	76	146291111	Sputcn32_R0066	-	^{02 Ala tRNA}
2715233	2715309	-	77	146291111	Sputcn32_R0067	-	^{14 Ile tRNA}
2715541	2717095	-	1555	146291111	Sputcn32_R0068	-	16S ribosomal RNA
2899667	2899742	-	76	146291111	Sputcn32_R0069	-	^{04 Glu tRNA}
2899843	2899918	-	76	146291111	Sputcn32_R0070	-	^{04 Glu tRNA}
2900154	2900229	-	76	146291111	Sputcn32_R0071	-	^{04 Glu tRNA}
2900361	2900436	-	76	146291111	Sputcn32_R0072	-	^{04 Glu tRNA}
2900568	2900643	-	76	146291111	Sputcn32_R0073	-	^{04 Glu tRNA}
2900776	2900851	-	76	146291111	Sputcn32_R0074	-	^{04 Glu tRNA}
2901018	2901093	-	76	146291111	Sputcn32_R0075	-	^{02 Ala tRNA}
2901208	2901283	-	76	146291111	Sputcn32_R0076	-	^{04 Glu tRNA}
2901359	2901434	-	76	146291111	Sputcn32_R0077	-	^{02 Ala tRNA}
2903363	2903438	+	76	146291111	Sputcn32_R0078	-	^{13 Val tRNA}
2903483	2903558	+	76	146291111	Sputcn32_R0079	-	^{13 Val tRNA}
2903596	2903671	+	76	146291111	Sputcn32_R0080	-	^{13 Val tRNA}
2903716	2903791	+	76	146291111	Sputcn32_R0081	-	^{13 Val tRNA}
2903820	2903895	+	76	146291111	Sputcn32_R0082	-	^{13 Val tRNA}
2903924	2903999	+	76	146291111	Sputcn32_R0083	-	^{13 Val tRNA}
3025150	3025225	+	76	146291111	Sputcn32_R0084	-	^{11 Arg tRNA}
3130097	3130172	+	76	146291111	Sputcn32_R0085	-	^{17 Phe tRNA}
3130217	3130292	+	76	146291111	Sputcn32_R0086	-	^{12 Thr tRNA}
3130779	3130854	+	76	146291111	Sputcn32_R0087	-	^{17 Phe tRNA}
3130899	3130974	+	76	146291111	Sputcn32_R0088	-	^{12 Thr tRNA}
3175886	3175962	-	77	146291111	Sputcn32_R0089	-	^{11 Arg tRNA}
3176060	3176151	-	92	146291111	Sputcn32_R0090	-	^{08 Ser tRNA}
3176187	3176263	-	77	146291111	Sputcn32_R0091	-	^{11 Arg tRNA}
3176308	3176384	-	77	146291111	Sputcn32_R0092	-	^{11 Arg tRNA}
3176427	3176503	-	77	146291111	Sputcn32_R0093	-	^{11 Arg tRNA}
3176591	3176667	-	77	146291111	Sputcn32_R0094	-	^{11 Arg tRNA}
3176692	3176768	-	77	146291111	Sputcn32_R0095	-	^{11 Arg tRNA}
3176791	3176882	-	92	146291111	Sputcn32_R0096	-	^{08 Ser tRNA}
3297328	3297404	-	77	146291111	Sputcn32_R0097	-	^{16 Met tRNA}
3297487	3297573	-	87	146291111	Sputcn32_R0098	-	^{15 Leu tRNA}
3312375	3312449	-	75	146291111	Sputcn32_R0099	-	^{05 Gln tRNA}
3312492	3312576	-	85	146291111	Sputcn32_R0100	-	^{15 Leu tRNA}
3312659	3312735	-	77	146291111	Sputcn32_R0101	-	^{16 Met tRNA}
3312738	3312812	-	75	146291111	Sputcn32_R0102	-	^{05 Gln tRNA}
3312835	3312909	-	75	146291111	Sputcn32_R0103	-	^{05 Gln tRNA}
3312958	3313042	-	85	146291111	Sputcn32_R0104	-	^{15 Leu tRNA}
3313113	3313189	-	77	146291111	Sputcn32_R0105	-	^{16 Met tRNA}
3394306	3394382	-	77	146291111	Sputcn32_R0106	-	^{20 Trp tRNA}
3827923	3827998	-	76	146291111	Sputcn32_R0107	-	^{01 Gly tRNA}
3828005	3828080	-	76	146291111	Sputcn32_R0108	-	^{01 Gly tRNA}
3828123	3828198	-	76	146291111	Sputcn32_R0109	-	^{01 Gly tRNA}
3828320	3828395	-	76	146291111	Sputcn32_R0110	-	^{01 Gly tRNA}
4074802	4074922	-	121	146291111	Sputcn32_R0111	-	5S ribosomal RNA
4075153	4078045	-	2893	146291111	Sputcn32_R0112	-	23S ribosomal RNA
4078336	4078411	-	76	146291111	Sputcn32_R0113	-	^{02 Ala tRNA}
4078550	4078626	-	77	146291111	Sputcn32_R0114	-	^{14 Ile tRNA}
4078858	4080412	-	1555	146291111	Sputcn32_R0115	-	16S ribosomal RNA
4190881	4190957	-	77	146291111	Sputcn32_R0116	-	^{03 Pro tRNA}
4191110	4191186	-	77	146291111	Sputcn32_R0117	-	^{03 Pro tRNA}
4191306	4191381	-	76	146291111	Sputcn32_R0118	-	^{09 His tRNA}
4191434	4191510	-	77	146291111	Sputcn32_R0119	-	^{11 Arg tRNA}
4300525	4300822	-	298	146291111	Sputcn32_R0120	-	RNA component of RNaseP
4333162	4333281	-	120	146291111	Sputcn32_R0121	-	5S ribosomal RNA
4333462	4336354	-	2893	146291111	Sputcn32_R0122	-	23S ribosomal RNA
4336818	4338372	-	1555	146291111	Sputcn32_R0123	-	16S ribosomal RNA
4380303	4380378	-	76	146291111	Sputcn32_R0124	-	^{12 Thr tRNA}
4380388	4380461	-	74	146291111	Sputcn32_R0125	-	^{01 Gly tRNA}
4380498	4380582	-	85	146291111	Sputcn32_R0126	-	^{18 Tyr tRNA}
4380590	4380665	-	76	146291111	Sputcn32_R0127	-	^{12 Thr tRNA}
4547401	4547521	-	121	146291111	Sputcn32_R0128	-	5S ribosomal RNA
4547749	4550641	-	2893	146291111	Sputcn32_R0129	-	23S ribosomal RNA
4550957	4552511	-	1555	146291111	Sputcn32_R0130	-	16S ribosomal RNA