Геном прокариот/Материалы:NC 009441

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   LOCUS       NC_009441            6096872 bp    DNA     circular BCT 14-AUG-2007
   DEFINITION  Flavobacterium johnsoniae UW101, complete genome.
   ACCESSION   NC_009441
   VERSION     NC_009441.1  GI:146297766
   KEYWORDS    .
   SOURCE      Flavobacterium johnsoniae UW101
     ORGANISM  Flavobacterium johnsoniae UW101
               Bacteria; Bacteroidetes; Flavobacteria; Flavobacteriales;
               Flavobacteriaceae; Flavobacterium.
   REFERENCE   1  (bases 1 to 6096872)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E.,
               Singan,V., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Xie,G., McBride,M. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Flavobacterium johnsoniae UW101
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 6096872)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (08-MAY-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 6096872)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E.,
               Singan,V., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Xie,G., McBride,M. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (24-APR-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000685.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000268
               Source DNA available from Mark McBride (mcbride@uwm.edu)
               Bacteria available from ATCC: ATCC 17061
               Contacts: Mark McBride (mcbride@uwm.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-PGF
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
24130 24249 - 120 146297766 Fjoh_R0001 - 5S ribosomal RNA
24406 27279 - 2874 146297766 Fjoh_R0002 - 23S ribosomal RNA
27468 27544 - 77 146297766 Fjoh_R0003 - 02 Ala tRNA
27685 27758 - 74 146297766 Fjoh_R0004 - 14 Ile tRNA
27883 29401 - 1519 146297766 Fjoh_R0005 - 16S ribosomal RNA
59185 59260 + 76 146297766 Fjoh_R0006 - 10 Lys tRNA
59298 59373 + 76 146297766 Fjoh_R0007 - 10 Lys tRNA
59415 59497 + 83 146297766 Fjoh_R0008 - 15 Leu tRNA
60334 60409 + 76 146297766 Fjoh_R0009 - 10 Lys tRNA
149554 149630 + 77 146297766 Fjoh_R0010 - 16 Met tRNA
210753 210830 + 78 146297766 Fjoh_R0011 - 03 Pro tRNA
285239 285315 - 77 146297766 Fjoh_R0012 - 12 Thr tRNA
285421 285497 - 77 146297766 Fjoh_R0013 - 12 Thr tRNA
479336 479413 + 78 146297766 Fjoh_R0014 - 13 Val tRNA
500470 500589 - 120 146297766 Fjoh_R0015 - 5S ribosomal RNA
500746 503619 - 2874 146297766 Fjoh_R0016 - 23S ribosomal RNA
503808 503884 - 77 146297766 Fjoh_R0017 - 02 Ala tRNA
504025 504098 - 74 146297766 Fjoh_R0018 - 14 Ile tRNA
504223 505741 - 1519 146297766 Fjoh_R0019 - 16S ribosomal RNA
636553 636629 + 77 146297766 Fjoh_R0020 - 02 Ala tRNA
717349 717422 - 74 146297766 Fjoh_R0021 - 16 Met tRNA
1158187 1158260 + 74 146297766 Fjoh_R0022 - Xaa tRNA
1273954 1274033 - 80 146297766 Fjoh_R0023 - 15 Leu tRNA
1309065 1309138 - 74 146297766 Fjoh_R0024 - 07 Asn tRNA
1309174 1309250 - 77 146297766 Fjoh_R0025 - 07 Asn tRNA
1466584 1466673 + 90 146297766 Fjoh_R0026 - 08 Ser tRNA
1544677 1544753 + 77 146297766 Fjoh_R0027 - 06 Asp tRNA
1545349 1545425 + 77 146297766 Fjoh_R0028 - 06 Asp tRNA
1555298 1555382 - 85 146297766 Fjoh_R0029 - 15 Leu tRNA
1617260 1617335 - 76 146297766 Fjoh_R0030 - 17 Phe tRNA
1877676 1877746 + 71 146297766 Fjoh_R0031 - 05 Gln tRNA
1877856 1877926 + 71 146297766 Fjoh_R0032 - 05 Gln tRNA
1997996 1998071 + 76 146297766 Fjoh_R0033 - 01 Gly tRNA
1998083 1998171 + 89 146297766 Fjoh_R0034 - 15 Leu tRNA
2049396 2049471 + 76 146297766 Fjoh_R0035 - 01 Gly tRNA
2049565 2049637 + 73 146297766 Fjoh_R0036 - 01 Gly tRNA
2099953 2100026 + 74 146297766 Fjoh_R0037 - 11 Arg tRNA
2152539 2152614 - 76 146297766 Fjoh_R0038 - 16 Met tRNA
2161302 2161376 - 75 146297766 Fjoh_R0039 - 04 Glu tRNA
2163372 2163447 - 76 146297766 Fjoh_R0040 - 16 Met tRNA
2238456 2238532 + 77 146297766 Fjoh_R0041 - 12 Thr tRNA
2238589 2238672 + 84 146297766 Fjoh_R0042 - 18 Tyr tRNA
2238761 2238835 + 75 146297766 Fjoh_R0043 - 12 Thr tRNA
2240138 2240211 + 74 146297766 Fjoh_R0044 - 20 Trp tRNA
2304220 2305738 + 1519 146297766 Fjoh_R0045 - 16S ribosomal RNA
2305862 2305935 + 74 146297766 Fjoh_R0046 - 14 Ile tRNA
2306076 2306152 + 77 146297766 Fjoh_R0047 - 02 Ala tRNA
2306342 2309215 + 2874 146297766 Fjoh_R0048 - 23S ribosomal RNA
2309372 2309491 + 120 146297766 Fjoh_R0049 - 5S ribosomal RNA
2543534 2543621 - 88 146297766 Fjoh_R0050 - 08 Ser tRNA
2544889 2546407 + 1519 146297766 Fjoh_R0051 - 16S ribosomal RNA
2546531 2546604 + 74 146297766 Fjoh_R0052 - 14 Ile tRNA
2546745 2546821 + 77 146297766 Fjoh_R0053 - 02 Ala tRNA
2547011 2549884 + 2874 146297766 Fjoh_R0054 - 23S ribosomal RNA
2550041 2550160 + 120 146297766 Fjoh_R0055 - 5S ribosomal RNA
2551831 2551918 - 88 146297766 Fjoh_R0056 - 08 Ser tRNA
3263822 3265340 + 1519 146297766 Fjoh_R0057 - 16S ribosomal RNA
3265464 3265537 + 74 146297766 Fjoh_R0058 - 14 Ile tRNA
3265678 3265754 + 77 146297766 Fjoh_R0059 - 02 Ala tRNA
3265944 3268817 + 2874 146297766 Fjoh_R0060 - 23S ribosomal RNA
3268974 3269093 + 120 146297766 Fjoh_R0061 - 5S ribosomal RNA
3269156 3269228 + 73 146297766 Fjoh_R0062 - 17 Phe tRNA
3269235 3269323 + 89 146297766 Fjoh_R0063 - 15 Leu tRNA
3353648 3353725 + 78 146297766 Fjoh_R0064 - 13 Val tRNA
3354107 3354184 + 78 146297766 Fjoh_R0065 - 13 Val tRNA
3525190 3525266 + 77 146297766 Fjoh_R0066 - 11 Arg tRNA
5118548 5118667 - 120 146297766 Fjoh_R0067 - 5S ribosomal RNA
5118824 5121697 - 2874 146297766 Fjoh_R0068 - 23S ribosomal RNA
5121886 5121962 - 77 146297766 Fjoh_R0069 - 02 Ala tRNA
5122103 5122176 - 74 146297766 Fjoh_R0070 - 14 Ile tRNA
5122301 5123819 - 1519 146297766 Fjoh_R0071 - 16S ribosomal RNA
5248419 5248499 + 81 146297766 Fjoh_R0072 - 18 Tyr tRNA
5465948 5466213 - 266 146297766 Fjoh_R0073 - RNA component of RNase P
5525783 5525882 - 100 146297766 Fjoh_R0074 - SRP RNA; RNA component of signal recognition particle
5575980 5576056 - 77 146297766 Fjoh_R0075 - 11 Arg tRNA
5576071 5576145 - 75 146297766 Fjoh_R0076 - 03 Pro tRNA
5576160 5576243 - 84 146297766 Fjoh_R0077 - 08 Ser tRNA
5696434 5696509 - 76 146297766 Fjoh_R0078 - 09 His tRNA
5739228 5739348 - 121 146297766 Fjoh_R0079 - Xaa tRNA
5787394 5787790 + 397 146297766 Fjoh_R0080 - tmRNA
5965190 5965261 - 72 146297766 Fjoh_R0081 - 04 Glu tRNA
5965304 5965378 - 75 146297766 Fjoh_R0082 - 04 Glu tRNA
6091459 6091532 - 74 146297766 Fjoh_R0083 - 20 Trp tRNA