Геном прокариот/Материалы:NC 009484

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009484            3389227 bp    DNA     circular BCT 14-AUG-2007
   DEFINITION  Acidiphilium cryptum JF-5, complete genome.
   ACCESSION   NC_009484
   VERSION     NC_009484.1  GI:148259021
   KEYWORDS    .
   SOURCE      Acidiphilium cryptum JF-5
     ORGANISM  Acidiphilium cryptum JF-5
               Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales;
               Acetobacteraceae; Acidiphilium.
   REFERENCE   1  (bases 1 to 3389227)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Sims,D., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Kim,E., Magnuson,T. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Acidiphilium cryptum JF-5
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3389227)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (23-MAY-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3389227)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Sims,D., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Kim,E., Magnuson,T. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (04-MAY-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000697.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000181
               Source DNA and bacteria available from Timothy Magnuson
               (magntimo@isu.edu)
               Contacts: Timothy Magnuson (magntimo@isu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
42985	43060	+	76	148259021	Acry_R0001	-	^{10 Lys tRNA}
43236	43310	-	75	148259021	Acry_R0002	-	^{12 Thr tRNA}
89466	89551	+	86	148259021	Acry_R0003	-	^{18 Tyr tRNA}
269117	269206	-	90	148259021	Acry_R0004	-	^{08 Ser tRNA}
308460	308536	-	77	148259021	Acry_R0005	-	^{03 Pro tRNA}
316373	316462	+	90	148259021	Acry_R0006	-	^{08 Ser tRNA}
409792	409866	+	75	148259021	Acry_R0007	-	^{01 Gly tRNA}
708415	708489	+	75	148259021	Acry_R0008	-	^{13 Val tRNA}
779659	779735	-	77	148259021	Acry_R0009	-	^{11 Arg tRNA}
780126	780199	-	74	148259021	Acry_R0010	-	^{03 Pro tRNA}
824823	824897	+	75	148259021	Acry_R0011	-	^{12 Thr tRNA}
829736	829810	+	75	148259021	Acry_R0012	-	^{05 Gln tRNA}
1017347	1017428	+	82	148259021	Acry_R0013	-	^{15 Leu tRNA}
1024118	1024189	+	72	148259021	Acry_R0014	-	^{13 Val tRNA}
1024515	1024591	+	77	148259021	Acry_R0015	-	^{06 Asp tRNA}
1137874	1137950	-	77	148259021	Acry_R0016	-	^{20 Trp tRNA}
1144880	1144953	-	74	148259021	Acry_R0017	-	^{01 Gly tRNA}
1312606	1312681	-	76	148259021	Acry_R0019	-	^{10 Lys tRNA}
1431753	1431842	+	90	148259021	Acry_R0020	-	^{08 Ser tRNA}
1448307	1448382	-	76	148259021	Acry_R0021	-	^{04 Glu tRNA}
1668357	1668433	+	77	148259021	Acry_R0022	-	^{11 Arg tRNA}
1668714	1668788	-	75	148259021	Acry_R0023	-	^{12 Thr tRNA}
1711813	1711887	+	75	148259021	Acry_R0024	-	^{16 Met tRNA}
1734359	1734434	-	76	148259021	Acry_R0025	-	^{02 Ala tRNA}
1843982	1844067	+	86	148259021	Acry_R0026	-	^{15 Leu tRNA}
1863143	1863225	+	83	148259021	Acry_R0027	-	^{15 Leu tRNA}
1867251	1867327	+	77	148259021	Acry_R0028	-	^{03 Pro tRNA}
1900697	1900772	+	76	148259021	Acry_R0029	-	^{09 His tRNA}
1960152	1960225	-	74	148259021	Acry_R0030	-	^{19 Cys tRNA}
2007442	2007518	-	77	148259021	Acry_R0031	-	^{16 Met tRNA}
2007537	2007664	-	128	148259021	Acry_R0032	-	5S ribosomal RNA
2007753	2010488	-	2736	148259021	Acry_R0033	-	23S ribosomal RNA
2010925	2010997	-	73	148259021	Acry_R0034	-	^{02 Ala tRNA}
2011118	2011191	-	74	148259021	Acry_R0035	-	^{14 Ile tRNA}
2011416	2012908	-	1493	148259021	Acry_R0036	-	16S ribosomal RNA
2182743	2182818	-	76	148259021	Acry_R0037	-	^{17 Phe tRNA}
2193703	2193808	-	106	148259021	Acry_R0038	-	SRP RNA; RNA component of signal recognition particle
2207609	2207682	+	74	148259021	Acry_R0039	-	^{05 Gln tRNA}
2351947	2352023	+	77	148259021	Acry_R0040	-	^{11 Arg tRNA}
2521461	2521546	-	86	148259021	Acry_R0041	-	^{15 Leu tRNA}
2523927	2524019	+	93	148259021	Acry_R0042	-	^{08 Ser tRNA}
2585597	2585673	-	77	148259021	Acry_R0043	-	^{16 Met tRNA}
2585692	2585819	-	128	148259021	Acry_R0044	-	5S ribosomal RNA
2585908	2588643	-	2736	148259021	Acry_R0045	-	23S ribosomal RNA
2589080	2589152	-	73	148259021	Acry_R0046	-	^{02 Ala tRNA}
2589273	2589346	-	74	148259021	Acry_R0047	-	^{14 Ile tRNA}
2589571	2591063	-	1493	148259021	Acry_R0048	-	16S ribosomal RNA
2682423	2682496	-	74	148259021	Acry_R0049	-	^{01 Gly tRNA}
2743548	2743623	-	76	148259021	Acry_R0050	-	^{16 Met tRNA}
2915409	2915484	-	76	148259021	Acry_R0051	-	^{02 Ala tRNA}
2978235	2978310	+	76	148259021	Acry_R0052	-	^{04 Glu tRNA}
3076810	3076884	+	75	148259021	Acry_R0053	-	^{13 Val tRNA}
3081831	3081907	-	77	148259021	Acry_R0054	-	^{11 Arg tRNA}
3151334	3151671	+	338	148259021	Acry_R0055	-	RNase P
3177382	3177457	-	76	148259021	Acry_R0056	-	^{07 Asn tRNA}