Геном прокариот/Материалы:NC 009485

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009485            8264687 bp    DNA     circular BCT 14-AUG-2007
   DEFINITION  Bradyrhizobium sp. BTAi1, complete genome.
   ACCESSION   NC_009485
   VERSION     NC_009485.1  GI:148251626
   KEYWORDS    .
   SOURCE      Bradyrhizobium sp. BTAi1
     ORGANISM  Bradyrhizobium sp. BTAi1
               Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
               Bradyrhizobiaceae; Bradyrhizobium.
   REFERENCE   1  (bases 1 to 8264687)
     AUTHORS   Giraud,E., Moulin,L., Vallenet,D., Barbe,V., Cytrin,E.,
               Avarre,J.-C., Jaubert,M., Simon,D., Cartieaux,F., Prin,Y., Bena,G.,
               Hannibal,L., Fardoux,J., Kojadinovic,M., Vuillet,L., Lajus,A.,
               Cruveiller,S., Rouy,Z., Mangenot,S., Segurens,B., Dossat,C.,
               Franck,W.L., Chang,W.-S., Saunders,E., Bruce,D., Richardson,P.,
               Normand,P., Dreyfus,B., Pignol,D., Stacey,G., Emerich,D.,
               Vermeglio,A., Medigue,C. and Sadowsky,M.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Rhizobial Nod Factors are not Universally Required for Legume
               Nodulation
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 8264687)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (23-MAY-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 8264687)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Saunders,E., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (05-DEC-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000494.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000390
               Source DNA and bacteria available from Michael Sadowsky
               (sadowsky@umn.edu)
               Bacteria available from ATCC: ATCC BAA-1182
               Contacts: Eric Giraud (giraud@mpl.ird.fr)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
112686	112761	+	76	148251626	BBta_tRNA1	-	^{02 Ala tRNA}
230495	230581	+	87	148251626	BBta_tRNA2	-	^{15 Leu tRNA}
276743	276818	+	76	148251626	BBta_tRNA3	-	^{02 Ala tRNA}
289648	289723	-	76	148251626	BBta_tRNA52	-	^{12 Thr tRNA}
310428	310502	+	75	148251626	BBta_tRNA4	-	^{01 Gly tRNA}
432947	433036	+	90	148251626	BBta_tRNA5	-	^{08 Ser tRNA}
587810	587899	+	90	148251626	BBta_tRNA6	-	^{08 Ser tRNA}
758361	758463	+	103	148251626	BBta_miscRNA9	-	ykkC-yxkD
799661	799734	+	74	148251626	BBta_tRNA7	-	^{01 Gly tRNA}
927889	927963	-	75	148251626	BBta_tRNA51	-	^{12 Thr tRNA}
935782	935857	+	76	148251626	BBta_tRNA8	-	^{17 Phe tRNA}
1169214	1169298	-	85	148251626	BBta_tRNA50	-	^{15 Leu tRNA}
1273684	1275176	+	1493	148251626	BBta_rRNA16S1	-	16S ribosomal RNA
1275407	1275483	+	77	148251626	BBta_tRNA9	-	^{14 Ile tRNA}
1275627	1275702	+	76	148251626	BBta_tRNA10	-	^{02 Ala tRNA}
1276223	1279081	+	2859	148251626	BBta_rRNA23S1	-	23S ribosomal RNA
1279178	1279300	+	123	148251626	BBta_rRNA5S1	-	5S ribosomal RNA
1294885	1294961	+	77	148251626	BBta_tRNA11	-	^{16 Met tRNA}
1326564	1326631	+	68	148251626	BBta_tRNA12	-	Xaa tRNA
1490439	1490513	+	75	148251626	BBta_tRNA13	-	^{13 Val tRNA}
1817692	1817887	+	196	148251626	BBta_miscRNA13	-	RFN
1951990	1952066	+	77	148251626	BBta_tRNA14	-	^{16 Met tRNA}
2477299	2477375	+	77	148251626	BBta_tRNA15	-	^{03 Pro tRNA}
2583194	2583268	+	75	148251626	BBta_tRNA16	-	^{05 Gln tRNA}
3290341	3290534	+	194	148251626	BBta_miscRNA3	-	Cobalamin
3360485	3361977	+	1493	148251626	BBta_rRNA16S2	-	16S ribosomal RNA
3362208	3362284	+	77	148251626	BBta_tRNA17	-	^{14 Ile tRNA}
3362428	3362503	+	76	148251626	BBta_tRNA18	-	^{02 Ala tRNA}
3363025	3365883	+	2859	148251626	BBta_rRNA23S2	-	23S ribosomal RNA
3365979	3366101	+	123	148251626	BBta_rRNA5S2	-	5S ribosomal RNA
3688227	3688300	-	74	148251626	BBta_tRNA49	-	^{05 Gln tRNA}
3926502	3926576	-	75	148251626	BBta_tRNA48	-	^{07 Asn tRNA}
3926738	3926805	-	68	148251626	BBta_tRNA47	-	Xaa tRNA
4096130	4096206	-	77	148251626	BBta_tRNA46	-	^{11 Arg tRNA}
4131171	4131244	-	74	148251626	BBta_tRNA45	-	^{19 Cys tRNA}
4137741	4137815	-	75	148251626	BBta_tRNA44	-	^{07 Asn tRNA}
4231469	4231543	+	75	148251626	BBta_tRNA19	-	^{04 Glu tRNA}
4237965	4238041	+	77	148251626	BBta_tRNA20	-	^{03 Pro tRNA}
4309469	4309558	+	90	148251626	BBta_tRNA21	-	^{08 Ser tRNA}
4388572	4388647	+	76	148251626	BBta_tRNA22	-	^{10 Lys tRNA}
4783759	4783835	-	77	148251626	BBta_tRNA43	-	^{06 Asp tRNA}
4788896	4788972	-	77	148251626	BBta_tRNA42	-	^{13 Val tRNA}
4796151	4796235	-	85	148251626	BBta_tRNA41	-	^{15 Leu tRNA}
4837721	4837795	-	75	148251626	BBta_miscRNA12	-	intron gpII
4855404	4855481	-	78	148251626	BBta_tRNA40	-	^{03 Pro tRNA}
4931548	4931641	+	94	148251626	BBta_tRNA23	-	^{08 Ser tRNA}
5130994	5131078	-	85	148251626	BBta_tRNA39	-	^{15 Leu tRNA}
5191948	5192024	+	77	148251626	BBta_tRNA24	-	^{11 Arg tRNA}
5321726	5321801	-	76	148251626	BBta_tRNA38	-	^{20 Trp tRNA}
5356462	5356535	-	74	148251626	BBta_tRNA37	-	^{01 Gly tRNA}
5389264	5389349	-	86	148251626	BBta_tRNA36	-	^{18 Tyr tRNA}
5392519	5392593	+	75	148251626	BBta_tRNA25	-	^{12 Thr tRNA}
5463122	5463208	+	87	148251626	BBta_tRNA26	-	^{15 Leu tRNA}
5669954	5670060	+	107	148251626	BBta_miscRNA5	-	gcvT
5670064	5670154	+	91	148251626	BBta_miscRNA6	-	gcvT
6260705	6260780	-	76	148251626	BBta_tRNA35	-	^{10 Lys tRNA}
6303139	6303357	+	219	148251626	BBta_miscRNA4	-	Cobalamin
6305642	6305856	+	215	148251626	BBta_miscRNA2	-	Cobalamin
6425386	6425750	+	365	148251626	BBta_miscRNA10	-	RNaseP
6469822	6469918	+	97	148251626	BBta_miscRNA14	-	THI
6615111	6615186	+	76	148251626	BBta_tRNA27	-	^{16 Met tRNA}
6816299	6816372	-	74	148251626	BBta_miscRNA11	-	intron gpII
6851026	6851100	+	75	148251626	BBta_tRNA28	-	^{13 Val tRNA}
7041924	7041998	-	75	148251626	BBta_tRNA34	-	^{04 Glu tRNA}
7078602	7078678	+	77	148251626	BBta_tRNA29	-	Xaa tRNA
7140318	7140394	-	77	148251626	BBta_tRNA33	-	^{09 His tRNA}
7688219	7688295	-	77	148251626	BBta_tRNA32	-	^{11 Arg tRNA}
7712066	7712163	-	98	148251626	BBta_miscRNA1	-	SRP
7904972	7905048	-	77	148251626	BBta_tRNA31	-	^{11 Arg tRNA}
8089157	8089233	+	77	148251626	BBta_tRNA30	-	^{11 Arg tRNA}