Геном прокариот/Материалы:NC 009511

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009511            5382261 bp    DNA     circular BCT 14-AUG-2007
   DEFINITION  Sphingomonas wittichii RW1, complete genome.
   ACCESSION   NC_009511
   VERSION     NC_009511.1  GI:148552929
   KEYWORDS    .
   SOURCE      Sphingomonas wittichii RW1
     ORGANISM  Sphingomonas wittichii RW1
               Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
               Sphingomonadaceae; Sphingomonas.
   REFERENCE   1  (bases 1 to 5382261)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Saunders,E., Brettin,T., Bruce,D.,
               Detter,J.C., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Kim,E., Halden,R.U., Miller,T.R.,
               Salzberg,S.L., Eisen,J.A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Sphingomonas wittichii RW1
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5382261)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (04-JUN-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5382261)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Saunders,E., Brettin,T., Bruce,D.,
               Detter,J.C., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Kim,E., Halden,R.U., Miller,T.R.,
               Salzberg,S.L., Eisen,J.A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (08-MAY-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000699.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4002524
               Source DNA and bacteria available from Rolf Halden
               (rhalden@jhsph.edu)
               Contacts: Rolf Halden (rhalden@jhsph.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
47180	47254	+	75	148552929	Swit_R0001	-	^{13 Val tRNA}
53279	53379	+	101	148552929	Swit_R0002	-	SRP RNA; RNA component of signal recognition particle
68827	69157	+	331	148552929	Swit_R0003	-	RNase P
130034	130108	-	75	148552929	Swit_R0004	-	^{13 Val tRNA}
204481	204557	-	77	148552929	Swit_R0005	-	^{11 Arg tRNA}
413943	414018	-	76	148552929	Swit_R0006	-	^{04 Glu tRNA}
450513	450589	-	77	148552929	Swit_R0007	-	^{11 Arg tRNA}
515675	515764	-	90	148552929	Swit_R0008	-	^{08 Ser tRNA}
534208	534283	+	76	148552929	Swit_R0009	-	^{10 Lys tRNA}
598899	598972	+	74	148552929	Swit_R0010	-	^{01 Gly tRNA}
605479	605555	-	77	148552929	Swit_R0011	-	^{11 Arg tRNA}
647721	647805	-	85	148552929	Swit_R0012	-	^{15 Leu tRNA}
719543	719629	+	87	148552929	Swit_R0013	-	^{15 Leu tRNA}
941478	941552	-	75	148552929	Swit_R0014	-	^{05 Gln tRNA}
976105	976179	+	75	148552929	Swit_R0015	-	^{12 Thr tRNA}
1216985	1217059	-	75	148552929	Swit_R0016	-	^{12 Thr tRNA}
1233193	1233266	+	74	148552929	Swit_R0017	-	^{19 Cys tRNA}
1375211	1375286	-	76	148552929	Swit_R0018	-	^{10 Lys tRNA}
1564014	1564090	+	77	148552929	Swit_R0019	-	^{11 Arg tRNA}
1600789	1600865	-	77	148552929	Swit_R0020	-	^{03 Pro tRNA}
1690046	1690120	+	75	148552929	Swit_R0021	-	^{07 Asn tRNA}
2306328	2306404	-	77	148552929	Swit_R0022	-	^{16 Met tRNA}
2473596	2473669	-	74	148552929	Swit_R0023	-	^{01 Gly tRNA}
2696888	2696973	-	86	148552929	Swit_R0024	-	^{18 Tyr tRNA}
2730852	2730927	+	76	148552929	Swit_R0025	-	^{02 Ala tRNA}
2808482	2808558	-	77	148552929	Swit_R0026	-	^{16 Met tRNA}
2808722	2808841	-	120	148552929	Swit_R0027	-	5S ribosomal RNA
2808933	2811552	-	2620	148552929	Swit_R0028	-	23S ribosomal RNA
2811992	2812067	-	76	148552929	Swit_R0029	-	^{02 Ala tRNA}
2812084	2812160	-	77	148552929	Swit_R0030	-	^{14 Ile tRNA}
2812326	2813824	-	1499	148552929	Swit_R0031	-	16S ribosomal RNA
2821947	2822023	+	77	148552929	Swit_R0032	-	^{03 Pro tRNA}
2825070	2825146	+	77	148552929	Swit_R0033	-	^{03 Pro tRNA}
2843394	2843469	+	76	148552929	Swit_R0034	-	^{20 Trp tRNA}
3302252	3302338	+	87	148552929	Swit_R0035	-	^{15 Leu tRNA}
3680506	3680582	-	77	148552929	Swit_R0036	-	^{03 Pro tRNA}
3712655	3712745	+	91	148552929	Swit_R0037	-	^{08 Ser tRNA}
3762893	3762968	-	76	148552929	Swit_R0038	-	^{02 Ala tRNA}
3802685	3802761	+	77	148552929	Swit_R0039	-	^{06 Asp tRNA}
3844814	3846312	+	1499	148552929	Swit_R0040	-	16S ribosomal RNA
3846477	3846553	+	77	148552929	Swit_R0041	-	^{14 Ile tRNA}
3846570	3846645	+	76	148552929	Swit_R0042	-	^{02 Ala tRNA}
3847085	3849704	+	2620	148552929	Swit_R0043	-	23S ribosomal RNA
3849797	3849916	+	120	148552929	Swit_R0044	-	5S ribosomal RNA
3850079	3850155	+	77	148552929	Swit_R0045	-	^{16 Met tRNA}
4030547	4030621	+	75	148552929	Swit_R0046	-	^{01 Gly tRNA}
4277079	4277168	-	90	148552929	Swit_R0047	-	^{08 Ser tRNA}
4375752	4375828	+	77	148552929	Swit_R0048	-	^{09 His tRNA}
4383311	4383397	+	87	148552929	Swit_R0049	-	^{15 Leu tRNA}
4517782	4517857	+	76	148552929	Swit_R0050	-	^{17 Phe tRNA}
4913949	4914024	+	76	148552929	Swit_R0051	-	^{13 Val tRNA}
5028397	5028472	+	76	148552929	Swit_R0052	-	^{16 Met tRNA}
5063786	5063861	+	76	148552929	Swit_R0053	-	^{12 Thr tRNA}
5188077	5188150	+	74	148552929	Swit_R0054	-	^{05 Gln tRNA}
5207447	5207522	+	76	148552929	Swit_R0055	-	^{04 Glu tRNA}
5252412	5252504	+	93	148552929	Swit_R0056	-	^{08 Ser tRNA}