Геном прокариот/Материалы:NC 009513

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009513            1999618 bp    DNA     circular BCT 14-AUG-2007
   DEFINITION  Lactobacillus reuteri F275, complete genome.
   ACCESSION   NC_009513
   VERSION     NC_009513.1  GI:148543243
   KEYWORDS    .
   SOURCE      Lactobacillus reuteri F275
     ORGANISM  Lactobacillus reuteri F275
               Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae;
               Lactobacillus.
   REFERENCE   1  (bases 1 to 1999618)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Goltsman,E., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Kim,E., Walter,J., Heng,N.C.K., Tannock,G.W. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Lactobacillus reuteri DSM 20016
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 1999618)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (04-JUN-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 1999618)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Goltsman,E., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Kim,E., Walter,J., Heng,N.C.K., Tannock,G.W. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (17-MAY-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000705.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000135
               Source DNA available from Gerald Tannock
               (gerald.tannock@stonebow.otago.ac.nz)
               Bacteria available from DSMZ: DSM 20016
               Contacts: Gerald Tannock (gerald.tannock@stonebow.otago.ac.nz)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-PGF
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
18213	18288	-	76	148543243	Lreu_R0001	-	^{10 Lys tRNA}
20774	20849	-	76	148543243	Lreu_R0002	-	^{10 Lys tRNA}
177719	179305	+	1587	148543243	Lreu_R0003	-	16S ribosomal RNA
179499	182423	+	2925	148543243	Lreu_R0004	-	23S ribosomal RNA
182502	182620	+	119	148543243	Lreu_R0005	-	5S ribosomal RNA
182702	182774	+	73	148543243	Lreu_R0006	-	^{12 Thr tRNA}
204045	204119	+	75	148543243	Lreu_R0007	-	^{09 His tRNA}
233600	233673	+	74	148543243	Lreu_R0008	-	^{12 Thr tRNA}
312384	313970	+	1587	148543243	Lreu_R0009	-	16S ribosomal RNA
314164	317088	+	2925	148543243	Lreu_R0010	-	23S ribosomal RNA
317167	317286	+	120	148543243	Lreu_R0011	-	5S ribosomal RNA
317289	317361	+	73	148543243	Lreu_R0012	-	^{07 Asn tRNA}
317408	317480	+	73	148543243	Lreu_R0013	-	^{12 Thr tRNA}
320661	320733	+	73	148543243	Lreu_R0014	-	^{07 Asn tRNA}
324334	324416	+	83	148543243	Lreu_R0015	-	^{18 Tyr tRNA}
324427	324498	+	72	148543243	Lreu_R0016	-	^{05 Gln tRNA}
335218	335306	+	89	148543243	Lreu_R0017	-	^{15 Leu tRNA}
372805	372894	+	90	148543243	Lreu_R0018	-	SRP RNA; RNA component of signal recognition particle
469226	469596	+	371	148543243	Lreu_R0019	-	tmRNA
485359	485431	+	73	148543243	Lreu_R0020	-	^{05 Gln tRNA}
487534	487606	+	73	148543243	Lreu_R0021	-	^{04 Glu tRNA}
624373	625959	+	1587	148543243	Lreu_R0022	-	16S ribosomal RNA
626044	626118	+	75	148543243	Lreu_R0023	-	^{14 Ile tRNA}
626122	626194	+	73	148543243	Lreu_R0024	-	^{02 Ala tRNA}
626353	629277	+	2925	148543243	Lreu_R0025	-	23S ribosomal RNA
629355	629474	+	120	148543243	Lreu_R0026	-	5S ribosomal RNA
629476	629548	+	73	148543243	Lreu_R0027	-	^{13 Val tRNA}
629567	629639	+	73	148543243	Lreu_R0028	-	^{10 Lys tRNA}
629683	629755	+	73	148543243	Lreu_R0029	-	^{12 Thr tRNA}
629765	629836	+	72	148543243	Lreu_R0030	-	^{01 Gly tRNA}
629853	629938	+	86	148543243	Lreu_R0031	-	^{15 Leu tRNA}
629947	630020	+	74	148543243	Lreu_R0032	-	^{11 Arg tRNA}
630026	630099	+	74	148543243	Lreu_R0033	-	^{03 Pro tRNA}
630130	630203	+	74	148543243	Lreu_R0034	-	^{16 Met tRNA}
630219	630295	+	77	148543243	Lreu_R0035	-	^{16 Met tRNA}
630345	630432	+	88	148543243	Lreu_R0036	-	^{08 Ser tRNA}
630441	630514	+	74	148543243	Lreu_R0037	-	^{16 Met tRNA}
630519	630593	+	75	148543243	Lreu_R0038	-	^{06 Asp tRNA}
630603	630675	+	73	148543243	Lreu_R0039	-	^{17 Phe tRNA}
630691	630761	+	71	148543243	Lreu_R0040	-	^{01 Gly tRNA}
630771	630845	+	75	148543243	Lreu_R0041	-	^{14 Ile tRNA}
630848	630935	+	88	148543243	Lreu_R0042	-	^{08 Ser tRNA}
630940	631011	+	72	148543243	Lreu_R0043	-	^{04 Glu tRNA}
631022	631095	+	74	148543243	Lreu_R0044	-	^{16 Met tRNA}
631100	631174	+	75	148543243	Lreu_R0045	-	^{06 Asp tRNA}
639554	641140	+	1587	148543243	Lreu_R0046	-	16S ribosomal RNA
641225	641299	+	75	148543243	Lreu_R0047	-	^{14 Ile tRNA}
641303	641375	+	73	148543243	Lreu_R0048	-	^{02 Ala tRNA}
641534	644458	+	2925	148543243	Lreu_R0049	-	23S ribosomal RNA
644537	644656	+	120	148543243	Lreu_R0050	-	5S ribosomal RNA
741822	741909	-	88	148543243	Lreu_R0051	-	^{08 Ser tRNA}
1030554	1030625	+	72	148543243	Lreu_R0052	-	^{11 Arg tRNA}
1035974	1036045	-	72	148543243	Lreu_R0053	-	^{05 Gln tRNA}
1036085	1036157	-	73	148543243	Lreu_R0054	-	^{13 Val tRNA}
1036163	1036234	-	72	148543243	Lreu_R0055	-	^{04 Glu tRNA}
1036252	1036322	-	71	148543243	Lreu_R0056	-	^{01 Gly tRNA}
1036507	1036580	-	74	148543243	Lreu_R0057	-	^{03 Pro tRNA}
1036584	1036672	-	89	148543243	Lreu_R0058	-	^{15 Leu tRNA}
1036689	1036760	-	72	148543243	Lreu_R0059	-	^{01 Gly tRNA}
1036766	1036837	-	72	148543243	Lreu_R0060	-	^{04 Glu tRNA}
1047022	1047095	+	74	148543243	Lreu_R0061	-	^{03 Pro tRNA}
1074436	1074556	-	121	148543243	Lreu_R0062	-	5S ribosomal RNA
1074635	1077558	-	2924	148543243	Lreu_R0063	-	23S ribosomal RNA
1077752	1079338	-	1587	148543243	Lreu_R0064	-	16S ribosomal RNA
1244027	1244100	+	74	148543243	Lreu_R0065	-	^{11 Arg tRNA}
1323697	1323767	-	71	148543243	Lreu_R0066	-	^{01 Gly tRNA}
1329501	1329587	-	87	148543243	Lreu_R0067	-	^{15 Leu tRNA}
1369035	1369119	-	85	148543243	Lreu_R0068	-	^{15 Leu tRNA}
1369134	1369204	-	71	148543243	Lreu_R0069	-	^{19 Cys tRNA}
1369241	1369315	-	75	148543243	Lreu_R0070	-	^{09 His tRNA}
1369333	1369403	-	71	148543243	Lreu_R0071	-	^{20 Trp tRNA}
1369410	1369492	-	83	148543243	Lreu_R0072	-	^{18 Tyr tRNA}
1369498	1369570	-	73	148543243	Lreu_R0073	-	^{17 Phe tRNA}
1369607	1369679	-	73	148543243	Lreu_R0074	-	^{13 Val tRNA}
1369685	1369756	-	72	148543243	Lreu_R0075	-	^{04 Glu tRNA}
1369764	1369855	-	92	148543243	Lreu_R0076	-	^{08 Ser tRNA}
1369902	1370022	-	121	148543243	Lreu_R0077	-	5S ribosomal RNA
1370101	1373025	-	2925	148543243	Lreu_R0078	-	23S ribosomal RNA
1373183	1373255	-	73	148543243	Lreu_R0079	-	^{02 Ala tRNA}
1373259	1373333	-	75	148543243	Lreu_R0080	-	^{14 Ile tRNA}
1373419	1375005	-	1587	148543243	Lreu_R0081	-	16S ribosomal RNA
1448882	1448954	-	73	148543243	Lreu_R0082	-	^{11 Arg tRNA}
1551234	1551307	-	74	148543243	Lreu_R0083	-	^{03 Pro tRNA}
1551350	1551426	-	77	148543243	Lreu_R0084	-	^{11 Arg tRNA}
1551432	1551503	-	72	148543243	Lreu_R0085	-	^{01 Gly tRNA}
1551594	1551676	-	83	148543243	Lreu_R0086	-	^{15 Leu tRNA}
1551684	1551756	-	73	148543243	Lreu_R0087	-	^{13 Val tRNA}
1573126	1573200	-	75	148543243	Lreu_R0088	-	^{06 Asp tRNA}