Геном прокариот/Материалы:NC 009523

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009523            5801598 bp    DNA     circular BCT 27-JUN-2007
   DEFINITION  Roseiflexus sp. RS-1, complete genome.
   ACCESSION   NC_009523
   VERSION     NC_009523.1  GI:148654188
   KEYWORDS    .
   SOURCE      Roseiflexus sp. RS-1
     ORGANISM  Roseiflexus sp. RS-1
               Bacteria; Chloroflexi; Chloroflexales; Chloroflexaceae;
               Roseiflexus.
   REFERENCE   1  (bases 1 to 5801598)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chertkov,O., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Bryant,D. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Roseiflexus sp. RS-1
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5801598)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (06-JUN-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5801598)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chertkov,O., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Bryant,D. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (20-APR-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000686.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000376
               Source DNA and bacteria available from Donald Bryant
               (dab14@psu.edu)
               Contacts: Donald Bryant (dab14@psu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
183158	183232	+	75	148654188	RoseRS_R0001	-	^{01 Gly tRNA}
208798	208891	-	94	148654188	RoseRS_R0002	-	SRP RNA; RNA component of signal recognition particle
209010	209086	+	77	148654188	RoseRS_R0003	-	^{13 Val tRNA}
503630	504025	+	396	148654188	RoseRS_R0004	-	RNA component of RNaseP
622834	622908	-	75	148654188	RoseRS_R0005	-	^{12 Thr tRNA}
678592	678667	-	76	148654188	RoseRS_R0006	-	^{01 Gly tRNA}
866969	867042	+	74	148654188	RoseRS_R0007	-	^{01 Gly tRNA}
958788	958864	-	77	148654188	RoseRS_R0008	-	^{03 Pro tRNA}
967499	967587	+	89	148654188	RoseRS_R0009	-	^{15 Leu tRNA}
967589	967664	+	76	148654188	RoseRS_R0010	-	^{13 Val tRNA}
967706	967781	+	76	148654188	RoseRS_R0011	-	^{17 Phe tRNA}
1026564	1026639	-	76	148654188	RoseRS_R0012	-	^{16 Met tRNA}
1048580	1048655	-	76	148654188	RoseRS_R0013	-	^{06 Asp tRNA}
1048664	1048740	-	77	148654188	RoseRS_R0014	-	^{04 Glu tRNA}
1343196	1343270	-	75	148654188	RoseRS_R0015	-	^{10 Lys tRNA}
1414348	1415838	+	1491	148654188	RoseRS_R0016	-	16S ribosomal RNA
1415974	1418934	+	2961	148654188	RoseRS_R0017	-	23S ribosomal RNA
1419001	1419120	+	120	148654188	RoseRS_R0018	-	5S ribosomal RNA
1419123	1419197	+	75	148654188	RoseRS_R0019	-	^{16 Met tRNA}
1462567	1462643	+	77	148654188	RoseRS_R0020	-	^{04 Glu tRNA}
1731942	1732017	-	76	148654188	RoseRS_R0021	-	^{02 Ala tRNA}
1732062	1732138	-	77	148654188	RoseRS_R0022	-	^{14 Ile tRNA}
1785593	1785669	-	77	148654188	RoseRS_R0023	-	^{13 Val tRNA}
2020547	2020620	-	74	148654188	RoseRS_R0024	-	^{05 Gln tRNA}
2020657	2020743	-	87	148654188	RoseRS_R0025	-	^{15 Leu tRNA}
2190218	2190303	+	86	148654188	RoseRS_R0026	-	^{15 Leu tRNA}
2190325	2190401	+	77	148654188	RoseRS_R0027	-	^{03 Pro tRNA}
2276449	2276523	-	75	148654188	RoseRS_R0028	-	^{16 Met tRNA}
2340230	2340305	-	76	148654188	RoseRS_R0029	-	^{10 Lys tRNA}
2407769	2407844	-	76	148654188	RoseRS_R0030	-	^{11 Arg tRNA}
2675595	2675669	-	75	148654188	RoseRS_R0031	-	^{07 Asn tRNA}
2803528	2805018	+	1491	148654188	RoseRS_R0032	-	16S ribosomal RNA
2805154	2808114	+	2961	148654188	RoseRS_R0033	-	23S ribosomal RNA
2808181	2808300	+	120	148654188	RoseRS_R0034	-	5S ribosomal RNA
2808303	2808377	+	75	148654188	RoseRS_R0035	-	^{16 Met tRNA}
2904615	2904690	-	76	148654188	RoseRS_R0036	-	^{02 Ala tRNA}
2904697	2904772	-	76	148654188	RoseRS_R0037	-	^{02 Ala tRNA}
3911765	3911841	+	77	148654188	RoseRS_R0038	-	^{03 Pro tRNA}
3923676	3923761	+	86	148654188	RoseRS_R0039	-	^{15 Leu tRNA}
3993122	3993198	-	77	148654188	RoseRS_R0040	-	^{11 Arg tRNA}
4052554	4052644	-	91	148654188	RoseRS_R0041	-	^{08 Ser tRNA}
4055767	4055842	+	76	148654188	RoseRS_R0042	-	^{20 Trp tRNA}
4055881	4055972	+	92	148654188	RoseRS_R0043	-	^{08 Ser tRNA}
4055986	4056076	+	91	148654188	RoseRS_R0044	-	^{08 Ser tRNA}
4173039	4173125	+	87	148654188	RoseRS_R0045	-	^{18 Tyr tRNA}
4173201	4173276	+	76	148654188	RoseRS_R0046	-	^{12 Thr tRNA}
4428276	4428351	+	76	148654188	RoseRS_R0047	-	^{12 Thr tRNA}
4593759	4594123	+	365	148654188	RoseRS_R0048	-	tmRNA
4655290	4655366	+	77	148654188	RoseRS_R0049	-	^{11 Arg tRNA}
4655425	4655514	+	90	148654188	RoseRS_R0050	-	^{08 Ser tRNA}
4676472	4676547	+	76	148654188	RoseRS_R0051	-	^{11 Arg tRNA}
4871342	4871416	+	75	148654188	RoseRS_R0052	-	^{19 Cys tRNA}
4929693	4929767	+	75	148654188	RoseRS_R0053	-	^{09 His tRNA}
5168295	5168379	+	85	148654188	RoseRS_R0054	-	^{15 Leu tRNA}
5254500	5254575	+	76	148654188	RoseRS_R0055	-	^{11 Arg tRNA}
5507986	5508059	+	74	148654188	RoseRS_R0056	-	^{05 Gln tRNA}
5722495	5722571	+	77	148654188	RoseRS_R0057	-	^{04 Glu tRNA}