Геном прокариот/Материалы:NC 009615

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009615            4811379 bp    DNA     circular BCT 29-JUN-2007
   DEFINITION  Parabacteroides distasonis ATCC 8503, complete genome.
   ACCESSION   NC_009615
   VERSION     NC_009615.1  GI:150006674
   KEYWORDS    .
   SOURCE      Parabacteroides distasonis ATCC 8503
     ORGANISM  Parabacteroides distasonis ATCC 8503
               Bacteria; Bacteroidetes; Bacteroidetes (class); Bacteroidales;
               Porphyromonadaceae; Parabacteroides.
   REFERENCE   1  (bases 1 to 4811379)
     AUTHORS   Xu,J., Mahowald,M.A., Ley,R.E., Lozupone,C.A., Hamady,M.,
               Martens,E.C., Henrissat,B., Coutinho,P.M., Minx,P., Latreille,P.,
               Cordum,H., Van Brunt,A., Kim,K., Fulton,R.S., Fulton,L.A.,
               Clifton,S.W., Wilson,R.K., Knight,R.D. and Gordon,J.I.
     TITLE     Evolution of Symbiotic Bacteria in the Distal Human Intestine
     JOURNAL   (er) PLoS Biol. 5 (7), E156 (2007) In press
      PUBMED   17579514
   REFERENCE   2  (bases 1 to 4811379)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (29-JUN-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4811379)
     AUTHORS   Xu,J., Minx,P., Latreille,P., Cordum,H., Van Brunt,A., Kim,K.,
               Fulton,R., Fulton,L., Chinwalla,A., Clifton,S., Wilson,R.,
               Mahowald,M., Henrissat,B., Martens,E., Ley,R. and Gordon,J.
     TITLE     Direct Submission
     JOURNAL   Submitted (21-SEP-2005) Genome Sequencing Center and Center for
               Genome Science, Washington University in St. Louis, 4444 Forest
               Park Boulevard, St. Louis, MO 63108, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000140.
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
142361	143857	+	1497	150006674	BDI_0133	-	16S ribosomal RNA
144045	144118	+	74	150006674	BDI_0134	-	^{14 Ile tRNA}
144129	144202	+	74	150006674	BDI_0135	-	^{02 Ala tRNA}
144296	147058	+	2763	150006674	BDI_0136	-	23S ribosomal RNA
147281	147431	+	151	150006674	BDI_0137	-	5S ribosomal RNA
186871	186944	-	74	150006674	BDI_0177	-	^{12 Thr tRNA}
206834	206909	-	76	150006674	BDI_0198	-	^{01 Gly tRNA}
206932	207017	-	86	150006674	BDI_0199	-	^{18 Tyr tRNA}
229800	229875	+	76	150006674	BDI_0220	-	^{09 His tRNA}
229966	230042	+	77	150006674	BDI_0221	-	^{09 His tRNA}
392940	393014	+	75	150006674	BDI_0345	-	^{03 Pro tRNA}
405601	405675	+	75	150006674	BDI_0355	-	^{16 Met tRNA}
416000	417494	+	1495	150006674	BDI_0363	-	16S ribosomal RNA
417682	417755	+	74	150006674	BDI_0364	-	^{14 Ile tRNA}
417766	417839	+	74	150006674	BDI_0365	-	^{02 Ala tRNA}
417969	420738	+	2770	150006674	BDI_0366	-	23S ribosomal RNA
420961	421111	+	151	150006674	BDI_0367	-	5S ribosomal RNA
524609	524685	+	77	150006674	BDI_0454	-	^{11 Arg tRNA}
564459	564534	-	76	150006674	BDI_0487	-	^{01 Gly tRNA}
805350	805423	-	74	150006674	BDI_0676	-	^{11 Arg tRNA}
805452	805525	-	74	150006674	BDI_0677	-	^{11 Arg tRNA}
805553	805629	-	77	150006674	BDI_0678	-	^{11 Arg tRNA}
994100	994184	+	85	150006674	BDI_0849	-	^{02 Ala tRNA}
1011220	1011295	+	76	150006674	BDI_0874	-	^{13 Val tRNA}
1262968	1263040	+	73	150006674	BDI_1086	-	^{01 Gly tRNA}
1263057	1263143	+	87	150006674	BDI_1087	-	^{15 Leu tRNA}
1263154	1263237	+	84	150006674	BDI_1088	-	^{15 Leu tRNA}
1399266	1399342	+	77	150006674	BDI_1204	-	^{12 Thr tRNA}
1399359	1399444	+	86	150006674	BDI_1205	-	^{18 Tyr tRNA}
1472560	1472632	-	73	150006674	BDI_1267	-	^{10 Lys tRNA}
1660708	1660781	-	74	150006674	BDI_1429	-	^{06 Asp tRNA}
1724967	1725053	-	87	150006674	BDI_1478	-	^{08 Ser tRNA}
1749950	1750024	+	75	150006674	BDI_1499	-	^{16 Met tRNA}
2019789	2019873	-	85	150006674	BDI_1701	-	^{08 Ser tRNA}
2019889	2019961	-	73	150006674	BDI_1702	-	^{10 Lys tRNA}
2019981	2020053	-	73	150006674	BDI_1703	-	^{10 Lys tRNA}
2028069	2028153	+	85	150006674	BDI_1712	-	^{08 Ser tRNA}
2029302	2029389	+	88	150006674	BDI_1713	-	^{08 Ser tRNA}
2135352	2135504	-	153	150006674	BDI_1789	-	5S ribosomal RNA
2135727	2138496	-	2770	150006674	BDI_1790	-	23S ribosomal RNA
2138626	2138699	-	74	150006674	BDI_1791	-	^{02 Ala tRNA}
2138710	2138783	-	74	150006674	BDI_1792	-	^{14 Ile tRNA}
2138973	2140467	-	1495	150006674	BDI_1793	-	16S ribosomal RNA
2150741	2150830	+	90	150006674	BDI_1802	-	^{08 Ser tRNA}
2182230	2182301	-	72	150006674	BDI_1831	-	^{19 Cys tRNA}
2182361	2182432	-	72	150006674	BDI_1832	-	^{19 Cys tRNA}
2206185	2206255	-	71	150006674	BDI_1851	-	^{05 Gln tRNA}
2206289	2206359	-	71	150006674	BDI_1852	-	^{05 Gln tRNA}
2382331	2382404	-	74	150006674	BDI_2014	-	^{06 Asp tRNA}
2382435	2382511	-	77	150006674	BDI_2015	-	^{06 Asp tRNA}
2665876	2665951	-	76	150006674	BDI_2271	-	^{20 Trp tRNA}
2667238	2667312	-	75	150006674	BDI_2273	-	^{12 Thr tRNA}
2667323	2667395	-	73	150006674	BDI_2274	-	^{01 Gly tRNA}
2667440	2667522	-	83	150006674	BDI_2275	-	^{18 Tyr tRNA}
2667539	2667615	-	77	150006674	BDI_2276	-	^{12 Thr tRNA}
2700924	2700998	+	75	150006674	BDI_2304	-	^{04 Glu tRNA}
2868962	2869065	-	104	150006674	BDI_2439	-	5S ribosomal RNA
2869288	2872057	-	2770	150006674	BDI_2440	-	23S ribosomal RNA
2872187	2872260	-	74	150006674	BDI_2441	-	^{02 Ala tRNA}
2872271	2872344	-	74	150006674	BDI_2442	-	^{14 Ile tRNA}
2872534	2874028	-	1495	150006674	BDI_2443	-	16S ribosomal RNA
3008472	3008546	-	75	150006674	BDI_2541	-	^{03 Pro tRNA}
3250108	3250211	-	104	150006674	BDI_2734	-	5S ribosomal RNA
3250434	3253196	-	2763	150006674	BDI_2735	-	23S ribosomal RNA
3253290	3253363	-	74	150006674	BDI_2736	-	^{02 Ala tRNA}
3253375	3253448	-	74	150006674	BDI_2737	-	^{14 Ile tRNA}
3253636	3255132	-	1497	150006674	BDI_2738	-	16S ribosomal RNA
3280384	3280460	-	77	150006674	BDI_2752	-	^{16 Met tRNA}
3408383	3408483	-	101	150006674	BDI_2857	-	5S ribosomal RNA
3408706	3411467	-	2762	150006674	BDI_2858	-	23S ribosomal RNA
3411561	3411634	-	74	150006674	BDI_2859	-	^{02 Ala tRNA}
3411646	3411719	-	74	150006674	BDI_2860	-	^{14 Ile tRNA}
3411907	3413403	-	1497	150006674	BDI_2861	-	16S ribosomal RNA
3661395	3661465	+	71	150006674	BDI_3059	-	^{05 Gln tRNA}
3865705	3865789	-	85	150006674	BDI_3194	-	^{15 Leu tRNA}
4000618	4000701	+	84	150006674	BDI_3307	-	^{15 Leu tRNA}
4071838	4071913	+	76	150006674	BDI_3360	-	^{10 Lys tRNA}
4280087	4280163	+	77	150006674	BDI_3495	-	^{16 Met tRNA}
4348773	4348847	-	75	150006674	BDI_3551	-	^{04 Glu tRNA}
4349209	4349283	-	75	150006674	BDI_3553	-	^{04 Glu tRNA}
4350795	4350869	+	75	150006674	BDI_3556	-	^{11 Arg tRNA}
4464204	4464280	-	77	150006674	BDI_3653	-	^{07 Asn tRNA}
4464321	4464397	-	77	150006674	BDI_3654	-	^{07 Asn tRNA}
4464426	4464502	-	77	150006674	BDI_3655	-	^{07 Asn tRNA}
4507464	4507536	-	73	150006674	BDI_3685	-	^{01 Gly tRNA}
4507549	4507636	-	88	150006674	BDI_3686	-	^{15 Leu tRNA}
4507657	4507732	-	76	150006674	BDI_3687	-	^{01 Gly tRNA}
4540126	4540202	+	77	150006674	BDI_3718	-	^{11 Arg tRNA}
4542284	4542361	-	78	150006674	BDI_3722	-	^{13 Val tRNA}
4542396	4542470	-	75	150006674	BDI_3723	-	^{13 Val tRNA}
4542501	4542578	-	78	150006674	BDI_3724	-	^{13 Val tRNA}
4550826	4550913	-	88	150006674	BDI_3734	-	^{08 Ser tRNA}
4618345	4618428	+	84	150006674	BDI_3788	-	^{15 Leu tRNA}
4631614	4631686	+	73	150006674	BDI_3800	-	^{12 Thr tRNA}
4631925	4632001	-	77	150006674	BDI_3801	-	^{02 Ala tRNA}
4683860	4683932	-	73	150006674	BDI_3846	-	^{20 Trp tRNA}
4685420	4685493	-	74	150006674	BDI_3849	-	^{03 Pro tRNA}
4685702	4685777	+	76	150006674	BDI_3850	-	^{17 Phe tRNA}
4775723	4775795	-	73	150006674	BDI_3939	-	^{17 Phe tRNA}
4787729	4789225	+	1497	150006674	BDI_3948	-	16S ribosomal RNA
4789413	4789486	+	74	150006674	BDI_3949	-	^{14 Ile tRNA}
4789497	4789570	+	74	150006674	BDI_3950	-	^{02 Ala tRNA}
4789664	4792425	+	2762	150006674	BDI_3951	-	23S ribosomal RNA
4792648	4792751	+	104	150006674	BDI_3953	-	5S ribosomal RNA