Геном прокариот/Материалы:NC 009616

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009616            1915238 bp    DNA     circular BCT 29-JUN-2007
   DEFINITION  Thermosipho melanesiensis BI429, complete genome.
   ACCESSION   NC_009616
   VERSION     NC_009616.1  GI:150019913
   KEYWORDS    .
   SOURCE      Thermosipho melanesiensis BI429
     ORGANISM  Thermosipho melanesiensis BI429
               Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Thermosipho.
   REFERENCE   1  (bases 1 to 1915238)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D.,
               Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Mikhailova,N., Nelson,K., Gogarten,J.P., Noll,K. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Thermosipho melanesiensis BI429
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 1915238)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (29-JUN-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 1915238)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D.,
               Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Mikhailova,N., Nelson,K., Gogarten,J.P., Noll,K. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (25-MAY-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000716.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4002279
               Source DNA and bacteria available from Kenneth Noll
               (kenneth.noll@uconn.edu)
               Contacts: Kenneth Noll (kenneth.noll@uconn.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
22289	22366	-	78	150019913	Tmel_R0001	-	^{06 Asp tRNA}
22438	22515	-	78	150019913	Tmel_R0002	-	^{06 Asp tRNA}
45121	45478	-	358	150019913	Tmel_R0003	-	tmRNA
45538	45625	-	88	150019913	Tmel_R0004	-	^{15 Leu tRNA}
57799	57874	-	76	150019913	Tmel_R0005	-	^{02 Ala tRNA}
119307	119382	-	76	150019913	Tmel_R0006	-	^{02 Ala tRNA}
125711	125787	+	77	150019913	Tmel_R0007	-	^{03 Pro tRNA}
125791	125866	+	76	150019913	Tmel_R0008	-	^{01 Gly tRNA}
125884	125960	+	77	150019913	Tmel_R0009	-	^{11 Arg tRNA}
125984	126059	+	76	150019913	Tmel_R0010	-	^{09 His tRNA}
126093	126169	+	77	150019913	Tmel_R0011	-	^{11 Arg tRNA}
208635	208711	-	77	150019913	Tmel_R0012	-	^{16 Met tRNA}
208742	208831	-	90	150019913	Tmel_R0013	-	^{15 Leu tRNA}
272808	272923	-	116	150019913	Tmel_R0014	-	5S ribosomal RNA
272962	275901	-	2940	150019913	Tmel_R0015	-	23S ribosomal RNA
275980	277338	-	1359	150019913	Tmel_R0016	-	16S ribosomal RNA
304049	304125	-	77	150019913	Tmel_R0017	-	^{11 Arg tRNA}
343693	343766	-	74	150019913	Tmel_R0018	-	^{05 Gln tRNA}
352505	352620	-	116	150019913	Tmel_R0019	-	5S ribosomal RNA
352659	355598	-	2940	150019913	Tmel_R0020	-	23S ribosomal RNA
355677	357035	-	1359	150019913	Tmel_R0021	-	16S ribosomal RNA
357666	357741	-	76	150019913	Tmel_R0022	-	^{16 Met tRNA}
371105	371180	+	76	150019913	Tmel_R0023	-	^{07 Asn tRNA}
387866	387941	+	76	150019913	Tmel_R0024	-	^{12 Thr tRNA}
405423	405498	+	76	150019913	Tmel_R0025	-	^{07 Asn tRNA}
588725	588810	+	86	150019913	Tmel_R0026	-	^{08 Ser tRNA}
637065	637180	-	116	150019913	Tmel_R0027	-	5S ribosomal RNA
637219	640158	-	2940	150019913	Tmel_R0028	-	23S ribosomal RNA
640199	640274	-	76	150019913	Tmel_R0029	-	^{02 Ala tRNA}
640279	640355	-	77	150019913	Tmel_R0030	-	^{14 Ile tRNA}
640404	641762	-	1359	150019913	Tmel_R0031	-	16S ribosomal RNA
642109	642224	-	116	150019913	Tmel_R0032	-	5S ribosomal RNA
642263	645202	-	2940	150019913	Tmel_R0033	-	23S ribosomal RNA
645243	645318	-	76	150019913	Tmel_R0034	-	^{02 Ala tRNA}
645323	645399	-	77	150019913	Tmel_R0035	-	^{14 Ile tRNA}
645448	646806	-	1359	150019913	Tmel_R0036	-	16S ribosomal RNA
654791	654867	-	77	150019913	Tmel_R0037	-	^{11 Arg tRNA}
654904	654993	-	90	150019913	Tmel_R0038	-	^{08 Ser tRNA}
665819	665907	-	89	150019913	Tmel_R0039	-	^{15 Leu tRNA}
677738	677814	+	77	150019913	Tmel_R0040	-	^{19 Cys tRNA}
677823	677898	+	76	150019913	Tmel_R0041	-	^{16 Met tRNA}
679035	679110	+	76	150019913	Tmel_R0042	-	^{12 Thr tRNA}
679120	679206	+	87	150019913	Tmel_R0043	-	^{18 Tyr tRNA}
679392	679467	+	76	150019913	Tmel_R0044	-	^{20 Trp tRNA}
682872	682946	-	75	150019913	Tmel_R0045	-	^{01 Gly tRNA}
682957	683043	-	87	150019913	Tmel_R0046	-	^{15 Leu tRNA}
683049	683124	-	76	150019913	Tmel_R0047	-	^{10 Lys tRNA}
891345	891421	+	77	150019913	Tmel_R0048	-	^{03 Pro tRNA}
913591	913667	-	77	150019913	Tmel_R0049	-	^{12 Thr tRNA}
961018	961092	+	75	150019913	Tmel_R0050	-	^{04 Glu tRNA}
961096	961170	+	75	150019913	Tmel_R0051	-	^{11 Arg tRNA}
961178	961253	+	76	150019913	Tmel_R0052	-	^{10 Lys tRNA}
983707	983781	+	75	150019913	Tmel_R0053	-	^{13 Val tRNA}
983796	983870	+	75	150019913	Tmel_R0054	-	^{05 Gln tRNA}
1257290	1257366	+	77	150019913	Tmel_R0055	-	^{03 Pro tRNA}
1281130	1281405	-	276	150019913	Tmel_R0056	-	RNase P class A
1342233	1342319	+	87	150019913	Tmel_R0057	-	^{15 Leu tRNA}
1385737	1385841	-	105	150019913	Tmel_R0058	-	SRP RNA; RNA component of signal recognition particle
1393329	1393416	-	88	150019913	Tmel_R0059	-	^{08 Ser tRNA}
1415230	1415320	-	91	150019913	Tmel_R0060	-	^{08 Ser tRNA}
1436794	1436869	+	76	150019913	Tmel_R0061	-	^{04 Glu tRNA}
1436875	1436949	+	75	150019913	Tmel_R0062	-	^{13 Val tRNA}
1436964	1437039	+	76	150019913	Tmel_R0063	-	^{17 Phe tRNA}
1562595	1562670	+	76	150019913	Tmel_R0064	-	^{01 Gly tRNA}
1837436	1837510	+	75	150019913	Tmel_R0065	-	^{13 Val tRNA}