Материалы:NC 009617

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009617            6000632 bp    DNA     circular BCT 29-JUN-2007
   DEFINITION  Clostridium beijerinckii NCIMB 8052, complete genome.
   ACCESSION   NC_009617
   VERSION     NC_009617.1  GI:150014892
   KEYWORDS    .
   SOURCE      Clostridium beijerinckii NCIMB 8052
     ORGANISM  Clostridium beijerinckii NCIMB 8052
               Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae;
               Clostridium.
   REFERENCE   1  (bases 1 to 6000632)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Sims,D., Brettin,T., Bruce,D., Tapia,R., Brainard,J., Schmutz,J.,
               Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N.,
               Bennet,G., Cann,I., Chen,J.-S., Contreras,A.L., Jones,D.,
               Kashket,E., Mitchell,W., Stoddard,S., Schwarz,W., Qureshi,N.,
               Young,M., Shi,Z., Ezeji,T., White,B., Blaschek,H. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Clostridium beijerinckii NCIMB 8052
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 6000632)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (29-JUN-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 6000632)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Sims,D., Brettin,T., Bruce,D., Tapia,R., Brainard,J., Schmutz,J.,
               Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N.,
               Bennet,G., Cann,I., Chen,J.-S., Contreras,A.L., Jones,D.,
               Kashket,E., Mitchell,W., Stoddard,S., Schwarz,W., Qureshi,N.,
               Young,M., Shi,Z., Ezeji,T., White,B., Blaschek,H. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (06-JUN-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000721.
               URL -- http://www.jgi.doe.gov
               JGI Project ID:  3634512
               Source DNA and bacteria available from Hans Blaschek
               (blaschek@uiuc.edu)
               Bacteria available from NCIMB: NCIMB 8052
               Contacts: Hans Blaschek (blaschek@uiuc.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
9623	11127	+	1505	150014892	Cbei_R0001	-	16S ribosomal RNA
11348	14256	+	2909	150014892	Cbei_R0002	-	23S ribosomal RNA
14369	14484	+	116	150014892	Cbei_R0003	-	5S ribosomal RNA
14528	14604	+	77	150014892	Cbei_R0004	-	^{16 Met tRNA}
14606	14681	+	76	150014892	Cbei_R0005	-	^{02 Ala tRNA}
17570	17660	+	91	150014892	Cbei_R0006	-	^{08 Ser tRNA}
17691	17781	+	91	150014892	Cbei_R0007	-	^{08 Ser tRNA}
18025	18115	+	91	150014892	Cbei_R0008	-	^{08 Ser tRNA}
18134	18224	+	91	150014892	Cbei_R0009	-	^{08 Ser tRNA}
29427	29501	+	75	150014892	Cbei_R0010	-	^{11 Arg tRNA}
121863	121951	+	89	150014892	Cbei_R0011	-	^{15 Leu tRNA}
121973	122048	+	76	150014892	Cbei_R0012	-	^{16 Met tRNA}
122056	122132	+	77	150014892	Cbei_R0013	-	^{16 Met tRNA}
122139	122227	+	89	150014892	Cbei_R0014	-	^{15 Leu tRNA}
122249	122324	+	76	150014892	Cbei_R0015	-	^{16 Met tRNA}
122332	122408	+	77	150014892	Cbei_R0016	-	^{16 Met tRNA}
122415	122503	+	89	150014892	Cbei_R0017	-	^{15 Leu tRNA}
122525	122600	+	76	150014892	Cbei_R0018	-	^{16 Met tRNA}
122671	122759	+	89	150014892	Cbei_R0019	-	^{15 Leu tRNA}
122781	122856	+	76	150014892	Cbei_R0020	-	^{16 Met tRNA}
136705	136779	+	75	150014892	Cbei_R0021	-	^{07 Asn tRNA}
137017	137091	+	75	150014892	Cbei_R0022	-	^{07 Asn tRNA}
137531	137605	+	75	150014892	Cbei_R0023	-	^{07 Asn tRNA}
142453	143957	+	1505	150014892	Cbei_R0024	-	16S ribosomal RNA
144098	144173	+	76	150014892	Cbei_R0025	-	^{02 Ala tRNA}
144177	144253	+	77	150014892	Cbei_R0026	-	^{14 Ile tRNA}
144366	147274	+	2909	150014892	Cbei_R0027	-	23S ribosomal RNA
147348	147463	+	116	150014892	Cbei_R0028	-	5S ribosomal RNA
147468	147543	+	76	150014892	Cbei_R0029	-	^{17 Phe tRNA}
147548	147622	+	75	150014892	Cbei_R0030	-	^{19 Cys tRNA}
174419	174494	+	76	150014892	Cbei_R0031	-	^{12 Thr tRNA}
354960	355044	+	85	150014892	Cbei_R0032	-	^{15 Leu tRNA}
355049	355123	+	75	150014892	Cbei_R0033	-	^{01 Gly tRNA}
431481	431556	+	76	150014892	Cbei_R0034	-	^{03 Pro tRNA}
431574	431647	+	74	150014892	Cbei_R0035	-	^{01 Gly tRNA}
431798	431874	+	77	150014892	Cbei_R0036	-	^{11 Arg tRNA}
431881	431956	+	76	150014892	Cbei_R0037	-	^{03 Pro tRNA}
431973	432046	+	74	150014892	Cbei_R0038	-	^{01 Gly tRNA}
432082	432158	+	77	150014892	Cbei_R0039	-	^{11 Arg tRNA}
432164	432239	+	76	150014892	Cbei_R0040	-	^{09 His tRNA}
432243	432317	+	75	150014892	Cbei_R0041	-	^{05 Gln tRNA}
432325	432400	+	76	150014892	Cbei_R0042	-	^{10 Lys tRNA}
432418	432502	+	85	150014892	Cbei_R0043	-	^{15 Leu tRNA}
432508	432582	+	75	150014892	Cbei_R0044	-	^{01 Gly tRNA}
432606	432679	+	74	150014892	Cbei_R0045	-	^{01 Gly tRNA}
432685	432760	+	76	150014892	Cbei_R0046	-	^{10 Lys tRNA}
432818	432892	+	75	150014892	Cbei_R0047	-	^{05 Gln tRNA}
432900	432975	+	76	150014892	Cbei_R0048	-	^{10 Lys tRNA}
432995	433079	+	85	150014892	Cbei_R0049	-	^{15 Leu tRNA}
433085	433159	+	75	150014892	Cbei_R0050	-	^{01 Gly tRNA}
433183	433256	+	74	150014892	Cbei_R0051	-	^{01 Gly tRNA}
433303	433379	+	77	150014892	Cbei_R0052	-	^{11 Arg tRNA}
446133	447637	+	1505	150014892	Cbei_R0053	-	16S ribosomal RNA
447774	447850	+	77	150014892	Cbei_R0054	-	^{14 Ile tRNA}
447938	450846	+	2909	150014892	Cbei_R0055	-	23S ribosomal RNA
450919	450993	+	75	150014892	Cbei_R0056	-	^{07 Asn tRNA}
515496	515580	+	85	150014892	Cbei_R0057	-	^{18 Tyr tRNA}
515590	515665	+	76	150014892	Cbei_R0058	-	^{13 Val tRNA}
515693	515767	+	75	150014892	Cbei_R0059	-	^{12 Thr tRNA}
515780	515864	+	85	150014892	Cbei_R0060	-	^{18 Tyr tRNA}
515874	515949	+	76	150014892	Cbei_R0061	-	^{13 Val tRNA}
515980	516054	+	75	150014892	Cbei_R0062	-	^{12 Thr tRNA}
516067	516151	+	85	150014892	Cbei_R0063	-	^{18 Tyr tRNA}
568733	568807	+	75	150014892	Cbei_R0064	-	^{20 Trp tRNA}
570814	570888	+	75	150014892	Cbei_R0065	-	^{20 Trp tRNA}
805096	805452	+	357	150014892	Cbei_R0066	-	tmRNA
924919	926423	+	1505	150014892	Cbei_R0067	-	16S ribosomal RNA
926564	926639	+	76	150014892	Cbei_R0068	-	^{02 Ala tRNA}
926762	929670	+	2909	150014892	Cbei_R0069	-	23S ribosomal RNA
929807	929922	+	116	150014892	Cbei_R0070	-	5S ribosomal RNA
973865	973950	+	86	150014892	Cbei_R0071	-	^{15 Leu tRNA}
1039601	1039892	+	292	150014892	Cbei_R0072	-	RNAseP RNA
1735288	1735363	+	76	150014892	Cbei_R0073	-	^{09 His tRNA}
1735367	1735441	+	75	150014892	Cbei_R0074	-	^{05 Gln tRNA}
1735448	1735523	+	76	150014892	Cbei_R0075	-	^{10 Lys tRNA}
1765271	1765357	-	87	150014892	Cbei_R0076	-	^{15 Leu tRNA}
2031255	2032759	+	1505	150014892	Cbei_R0077	-	16S ribosomal RNA
2033276	2036186	+	2911	150014892	Cbei_R0078	-	23S ribosomal RNA
2036440	2036555	+	116	150014892	Cbei_R0079	-	5S ribosomal RNA
2220562	2220662	-	101	150014892	Cbei_R0080	-	SRP RNA; RNA component of signal recognition particle
2254715	2256219	+	1505	150014892	Cbei_R0081	-	16S ribosomal RNA
2256566	2259476	+	2911	150014892	Cbei_R0082	-	23S ribosomal RNA
2259548	2259622	+	75	150014892	Cbei_R0083	-	^{07 Asn tRNA}
2259628	2259743	+	116	150014892	Cbei_R0084	-	5S ribosomal RNA
2266370	2267874	+	1505	150014892	Cbei_R0085	-	16S ribosomal RNA
2268095	2271006	+	2912	150014892	Cbei_R0086	-	23S ribosomal RNA
2271078	2271152	+	75	150014892	Cbei_R0087	-	^{07 Asn tRNA}
2271158	2271273	+	116	150014892	Cbei_R0088	-	5S ribosomal RNA
2672602	2672676	-	75	150014892	Cbei_R0089	-	^{04 Glu tRNA}
3398860	3398934	-	75	150014892	Cbei_R0090	-	^{04 Glu tRNA}
3398954	3399028	-	75	150014892	Cbei_R0091	-	^{12 Thr tRNA}
3399044	3399120	-	77	150014892	Cbei_R0092	-	^{06 Asp tRNA}
3399127	3399202	-	76	150014892	Cbei_R0093	-	^{17 Phe tRNA}
3399207	3399322	-	116	150014892	Cbei_R0094	-	5S ribosomal RNA
3399464	3402373	-	2910	150014892	Cbei_R0095	-	23S ribosomal RNA
3402720	3404224	-	1505	150014892	Cbei_R0096	-	16S ribosomal RNA
3549338	3549425	-	88	150014892	Cbei_R0097	-	^{14 Ile tRNA}
3958886	3958961	-	76	150014892	Cbei_R0098	-	^{10 Lys tRNA}
3959040	3959115	-	76	150014892	Cbei_R0099	-	^{09 His tRNA}
3959122	3959198	-	77	150014892	Cbei_R0100	-	^{11 Arg tRNA}
3959234	3959307	-	74	150014892	Cbei_R0101	-	^{01 Gly tRNA}
4542982	4543097	-	116	150014892	Cbei_R0102	-	5S ribosomal RNA
4543173	4546085	-	2913	150014892	Cbei_R0103	-	23S ribosomal RNA
4546432	4547936	-	1505	150014892	Cbei_R0104	-	16S ribosomal RNA
5724399	5724474	+	76	150014892	Cbei_R0105	-	^{03 Pro tRNA}
5728021	5728096	-	76	150014892	Cbei_R0106	-	^{17 Phe tRNA}
5728101	5728216	-	116	150014892	Cbei_R0107	-	5S ribosomal RNA
5737922	5737997	-	76	150014892	Cbei_R0108	-	^{02 Ala tRNA}
5737999	5738075	-	77	150014892	Cbei_R0109	-	^{16 Met tRNA}
5738119	5738234	-	116	150014892	Cbei_R0110	-	5S ribosomal RNA
5738310	5741220	-	2911	150014892	Cbei_R0111	-	23S ribosomal RNA
5741441	5742945	-	1505	150014892	Cbei_R0112	-	16S ribosomal RNA
5745497	5745572	-	76	150014892	Cbei_R0113	-	^{10 Lys tRNA}
5745577	5745692	-	116	150014892	Cbei_R0114	-	5S ribosomal RNA
5747092	5747167	-	76	150014892	Cbei_R0115	-	^{10 Lys tRNA}
5747174	5747289	-	116	150014892	Cbei_R0116	-	5S ribosomal RNA
5747365	5750273	-	2909	150014892	Cbei_R0117	-	23S ribosomal RNA
5750494	5751998	-	1505	150014892	Cbei_R0118	-	16S ribosomal RNA
5764406	5764521	-	116	150014892	Cbei_R0119	-	5S ribosomal RNA
5764658	5767566	-	2909	150014892	Cbei_R0120	-	23S ribosomal RNA
5767787	5769291	-	1505	150014892	Cbei_R0121	-	16S ribosomal RNA
5770404	5770519	-	116	150014892	Cbei_R0122	-	5S ribosomal RNA
5770595	5773503	-	2909	150014892	Cbei_R0123	-	23S ribosomal RNA
5773724	5775228	-	1505	150014892	Cbei_R0124	-	16S ribosomal RNA
5829413	5829513	-	101	150014892	Cbei_R0125	-	SRP RNA; RNA component of signal recognition particle
5886417	5886506	-	90	150014892	Cbei_R0126	-	^{08 Ser tRNA}
5911068	5911142	-	75	150014892	Cbei_R0127	-	^{11 Arg tRNA}
5928131	5928246	-	116	150014892	Cbei_R0128	-	5S ribosomal RNA
5928322	5931233	-	2912	150014892	Cbei_R0129	-	23S ribosomal RNA
5931454	5932958	-	1505	150014892	Cbei_R0130	-	16S ribosomal RNA
5967624	5967700	-	77	150014892	Cbei_R0131	-	^{06 Asp tRNA}
5967707	5967782	-	76	150014892	Cbei_R0132	-	^{13 Val tRNA}
5967799	5967873	-	75	150014892	Cbei_R0133	-	^{04 Glu tRNA}
5967903	5967977	-	75	150014892	Cbei_R0134	-	^{12 Thr tRNA}
5967988	5968064	-	77	150014892	Cbei_R0135	-	^{06 Asp tRNA}
5968071	5968146	-	76	150014892	Cbei_R0136	-	^{13 Val tRNA}
5968162	5968236	-	75	150014892	Cbei_R0137	-	^{04 Glu tRNA}
5968266	5968340	-	75	150014892	Cbei_R0138	-	^{12 Thr tRNA}
5968351	5968427	-	77	150014892	Cbei_R0139	-	^{06 Asp tRNA}
5968434	5968509	-	76	150014892	Cbei_R0140	-	^{13 Val tRNA}
5968526	5968600	-	75	150014892	Cbei_R0141	-	^{04 Glu tRNA}

Ссылки[править]

Genome > Bacteria > Clostridium beijerinckii NCIMB 8052, complete genome - NCBI,