Геном прокариот/Материалы:NC 009655
(перенаправлено с «Материалы:NC 009655»)
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Базовый уровень статей |
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LOCUS NC_009655 2319663 bp DNA circular BCT 25-JUL-2007
DEFINITION Actinobacillus succinogenes 130Z, complete genome.
ACCESSION NC_009655
VERSION NC_009655.1 GI:152977688
KEYWORDS .
SOURCE Actinobacillus succinogenes 130Z
ORGANISM Actinobacillus succinogenes 130Z
Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales;
Pasteurellaceae; Actinobacillus.
REFERENCE 1 (bases 1 to 2319663)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
Dalin,E., Tice,H., Pitluck,S., Lowry,S., Clum,A., Schmutz,J.,
Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Vieille,C.
and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Actinobacillus succinogenes 130Z
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2319663)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (24-JUL-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2319663)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
Dalin,E., Tice,H., Pitluck,S., Lowry,S., Clum,A., Schmutz,J.,
Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Vieille,C.
and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (25-JUN-2007) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000746.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4000129
Source DNA and bacteria available from Claire Vieille
(vieille@msu.edu)
Contacts: Claire Vieille (vieille@msu.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-PGF
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК[править]
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 33508 | 33583 | - | 76 | 152977688 | Asuc_R0001 | - | 20 Trp tRNA |
| 33602 | 33678 | - | 77 | 152977688 | Asuc_R0002 | - | 06 Asp tRNA |
| 33689 | 33803 | - | 115 | 152977688 | Asuc_R0003 | - | 5S ribosomal RNA |
| 33855 | 33969 | - | 115 | 152977688 | Asuc_R0004 | - | 5S ribosomal RNA |
| 34076 | 37071 | - | 2996 | 152977688 | Asuc_R0005 | - | 23S ribosomal RNA |
| 37365 | 37440 | - | 76 | 152977688 | Asuc_R0006 | - | 02 Ala tRNA |
| 37511 | 37587 | - | 77 | 152977688 | Asuc_R0007 | - | 14 Ile tRNA |
| 37671 | 39205 | - | 1535 | 152977688 | Asuc_R0008 | - | 16S ribosomal RNA |
| 111891 | 111966 | - | 76 | 152977688 | Asuc_R0009 | - | 12 Thr tRNA |
| 111971 | 112045 | - | 75 | 152977688 | Asuc_R0010 | - | 01 Gly tRNA |
| 112082 | 112166 | - | 85 | 152977688 | Asuc_R0011 | - | 18 Tyr tRNA |
| 112194 | 112269 | - | 76 | 152977688 | Asuc_R0012 | - | 12 Thr tRNA |
| 319151 | 319265 | - | 115 | 152977688 | Asuc_R0013 | - | 5S ribosomal RNA |
| 319372 | 322367 | - | 2996 | 152977688 | Asuc_R0014 | - | 23S ribosomal RNA |
| 322661 | 322736 | - | 76 | 152977688 | Asuc_R0015 | - | 02 Ala tRNA |
| 322807 | 322883 | - | 77 | 152977688 | Asuc_R0016 | - | 14 Ile tRNA |
| 322967 | 324501 | - | 1535 | 152977688 | Asuc_R0017 | - | 16S ribosomal RNA |
| 334332 | 334422 | - | 91 | 152977688 | Asuc_R0018 | - | Sec tRNA |
| 562856 | 564391 | + | 1536 | 152977688 | Asuc_R0019 | - | 16S ribosomal RNA |
| 564543 | 564618 | + | 76 | 152977688 | Asuc_R0020 | - | 04 Glu tRNA |
| 564837 | 567832 | + | 2996 | 152977688 | Asuc_R0021 | - | 23S ribosomal RNA |
| 567939 | 568053 | + | 115 | 152977688 | Asuc_R0022 | - | 5S ribosomal RNA |
| 596425 | 596500 | + | 76 | 152977688 | Asuc_R0023 | - | 17 Phe tRNA |
| 596506 | 596581 | + | 76 | 152977688 | Asuc_R0024 | - | 07 Asn tRNA |
| 613532 | 613607 | - | 76 | 152977688 | Asuc_R0025 | - | 02 Ala tRNA |
| 615299 | 615374 | + | 76 | 152977688 | Asuc_R0026 | - | 13 Val tRNA |
| 615426 | 615501 | + | 76 | 152977688 | Asuc_R0027 | - | 13 Val tRNA |
| 615616 | 615691 | + | 76 | 152977688 | Asuc_R0028 | - | 13 Val tRNA |
| 742664 | 742757 | + | 94 | 152977688 | Asuc_R0029 | - | 08 Ser tRNA |
| 742800 | 742876 | + | 77 | 152977688 | Asuc_R0030 | - | 11 Arg tRNA |
| 742943 | 743019 | + | 77 | 152977688 | Asuc_R0031 | - | 11 Arg tRNA |
| 769187 | 769262 | - | 76 | 152977688 | Asuc_R0032 | - | 12 Thr tRNA |
| 821154 | 821230 | - | 77 | 152977688 | Asuc_R0033 | - | 11 Arg tRNA |
| 821283 | 821359 | - | 77 | 152977688 | Asuc_R0034 | - | 03 Pro tRNA |
| 911481 | 913016 | + | 1536 | 152977688 | Asuc_R0035 | - | 16S ribosomal RNA |
| 913168 | 913243 | + | 76 | 152977688 | Asuc_R0036 | - | 04 Glu tRNA |
| 913462 | 916457 | + | 2996 | 152977688 | Asuc_R0037 | - | 23S ribosomal RNA |
| 916564 | 916678 | + | 115 | 152977688 | Asuc_R0038 | - | 5S ribosomal RNA |
| 938187 | 938263 | - | 77 | 152977688 | Asuc_R0039 | - | 06 Asp tRNA |
| 938298 | 938374 | - | 77 | 152977688 | Asuc_R0040 | - | 06 Asp tRNA |
| 973632 | 973721 | - | 90 | 152977688 | Asuc_R0041 | - | 08 Ser tRNA |
| 998788 | 998864 | - | 77 | 152977688 | Asuc_R0042 | - | 16 Met tRNA |
| 1024112 | 1024198 | + | 87 | 152977688 | Asuc_R0043 | - | 15 Leu tRNA |
| 1071626 | 1071701 | - | 76 | 152977688 | Asuc_R0044 | - | 01 Gly tRNA |
| 1083338 | 1083427 | + | 90 | 152977688 | Asuc_R0045 | - | 08 Ser tRNA |
| 1130125 | 1130201 | + | 77 | 152977688 | Asuc_R0046 | - | 11 Arg tRNA |
| 1130231 | 1130306 | + | 76 | 152977688 | Asuc_R0047 | - | 09 His tRNA |
| 1130328 | 1130404 | + | 77 | 152977688 | Asuc_R0048 | - | 03 Pro tRNA |
| 1130551 | 1132085 | + | 1535 | 152977688 | Asuc_R0049 | - | 16S ribosomal RNA |
| 1132169 | 1132245 | + | 77 | 152977688 | Asuc_R0050 | - | 14 Ile tRNA |
| 1132316 | 1132391 | + | 76 | 152977688 | Asuc_R0051 | - | 02 Ala tRNA |
| 1132685 | 1135680 | + | 2996 | 152977688 | Asuc_R0052 | - | 23S ribosomal RNA |
| 1135787 | 1135901 | + | 115 | 152977688 | Asuc_R0053 | - | 5S ribosomal RNA |
| 1180496 | 1182031 | + | 1536 | 152977688 | Asuc_R0054 | - | 16S ribosomal RNA |
| 1182183 | 1182258 | + | 76 | 152977688 | Asuc_R0055 | - | 04 Glu tRNA |
| 1182477 | 1185472 | + | 2996 | 152977688 | Asuc_R0056 | - | 23S ribosomal RNA |
| 1185579 | 1185693 | + | 115 | 152977688 | Asuc_R0057 | - | 5S ribosomal RNA |
| 1202474 | 1202550 | + | 77 | 152977688 | Asuc_R0058 | - | 16 Met tRNA |
| 1202570 | 1202652 | + | 83 | 152977688 | Asuc_R0059 | - | 15 Leu tRNA |
| 1202681 | 1202755 | + | 75 | 152977688 | Asuc_R0060 | - | 05 Gln tRNA |
| 1202798 | 1202872 | + | 75 | 152977688 | Asuc_R0061 | - | 05 Gln tRNA |
| 1202915 | 1202989 | + | 75 | 152977688 | Asuc_R0062 | - | 05 Gln tRNA |
| 1206949 | 1207024 | + | 76 | 152977688 | Asuc_R0063 | - | 07 Asn tRNA |
| 1215624 | 1215740 | - | 117 | 152977688 | Asuc_R0064 | - | SRP RNA; RNA component of signal recognition particle |
| 1242492 | 1242568 | + | 77 | 152977688 | Asuc_R0065 | - | 16 Met tRNA |
| 1365161 | 1365236 | - | 76 | 152977688 | Asuc_R0066 | - | 10 Lys tRNA |
| 1402662 | 1403027 | - | 366 | 152977688 | Asuc_R0067 | - | tmRNA |
| 1523540 | 1523614 | + | 75 | 152977688 | Asuc_R0068 | - | 10 Lys tRNA |
| 1582718 | 1582794 | - | 77 | 152977688 | Asuc_R0069 | - | 13 Val tRNA |
| 1657240 | 1657325 | - | 86 | 152977688 | Asuc_R0070 | - | 15 Leu tRNA |
| 1833882 | 1834174 | - | 293 | 152977688 | Asuc_R0071 | - | RNA component of RNaseP |
| 1876119 | 1876204 | + | 86 | 152977688 | Asuc_R0072 | - | 15 Leu tRNA |
| 1922674 | 1922749 | + | 76 | 152977688 | Asuc_R0073 | - | 01 Gly tRNA |
| 1922779 | 1922865 | + | 87 | 152977688 | Asuc_R0074 | - | 15 Leu tRNA |
| 1968993 | 1969068 | - | 76 | 152977688 | Asuc_R0075 | - | 10 Lys tRNA |
| 1969097 | 1969172 | - | 76 | 152977688 | Asuc_R0076 | - | 10 Lys tRNA |
| 1969202 | 1969277 | - | 76 | 152977688 | Asuc_R0077 | - | 10 Lys tRNA |
| 2030325 | 2030400 | + | 76 | 152977688 | Asuc_R0078 | - | 01 Gly tRNA |
| 2030418 | 2030504 | + | 87 | 152977688 | Asuc_R0079 | - | 15 Leu tRNA |
| 2030564 | 2030637 | + | 74 | 152977688 | Asuc_R0080 | - | 19 Cys tRNA |
| 2211790 | 2211865 | - | 76 | 152977688 | Asuc_R0081 | - | 16 Met tRNA |
| 2261239 | 2261328 | - | 90 | 152977688 | Asuc_R0082 | - | 08 Ser tRNA |