Геном прокариот/Материалы:NC 009664

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009664            4761183 bp    DNA     linear   BCT 25-JUL-2007
   DEFINITION  Kineococcus radiotolerans SRS30216, complete genome.
   ACCESSION   NC_009664
   VERSION     NC_009664.1  GI:152963972
   KEYWORDS    .
   SOURCE      Kineococcus radiotolerans SRS30216
     ORGANISM  Kineococcus radiotolerans SRS30216
               Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
               Frankineae; Kineosporiaceae; Kineococcus.
   REFERENCE   1  (bases 1 to 4761183)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Saunders,E.,
               Brettin,T., Bruce,D., Detter,J.C., Han,C., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Bagwell,C.E.,
               Shimkets,L., Berry,C.J., Fliermans,C. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Kineococcus radiotolerans
               SRS30216
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4761183)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (24-JUL-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4761183)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Saunders,E.,
               Brettin,T., Bruce,D., Detter,J.C., Han,C., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Bagwell,C.E.,
               Shimkets,L., Berry,C.J., Fliermans,C. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (04-JUL-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000750.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3436090
               Source DNA and bacteria available from Christopher E. Bagwell
               (christopher.bagwell@srnl.doe.gov)
               Contacts: Christopher E. Bagwell (christopher.bagwell@srnl.doe.gov)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376)
               Additional Notes: Kineococcus radiotolerans SRS30216 has 3
               replicons, a chromosome and two plasmids.  The chromosome and the
               largest plasmid, plasmid 1, both appear to be linear.  We have
               performed various pcr reactions in an attempt to circularize them.
               None have succeeded.
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
12075	12151	+	77	152963972	Krad_R0001	-	^{14 Ile tRNA}
24936	25011	+	76	152963972	Krad_R0002	-	^{02 Ala tRNA}
79441	79524	+	84	152963972	Krad_R0003	-	^{15 Leu tRNA}
334879	334974	+	96	152963972	Krad_R0004	-	^{08 Ser tRNA}
455758	455834	+	77	152963972	Krad_R0005	-	^{03 Pro tRNA}
493327	493419	-	93	152963972	Krad_R0006	-	SRP RNA; RNA component of signal recognition particle
493531	493618	+	88	152963972	Krad_R0007	-	^{08 Ser tRNA}
494774	494863	-	90	152963972	Krad_R0008	-	^{08 Ser tRNA}
499324	499396	-	73	152963972	Krad_R0009	-	^{11 Arg tRNA}
499570	499663	-	94	152963972	Krad_R0010	-	^{08 Ser tRNA}
537762	537838	+	77	152963972	Krad_R0011	-	^{12 Thr tRNA}
704531	704612	+	82	152963972	Krad_R0012	-	^{18 Tyr tRNA}
704706	704777	+	72	152963972	Krad_R0013	-	^{12 Thr tRNA}
704807	704879	+	73	152963972	Krad_R0014	-	^{16 Met tRNA}
713973	714048	+	76	152963972	Krad_R0015	-	^{20 Trp tRNA}
873295	873370	+	76	152963972	Krad_R0016	-	^{10 Lys tRNA}
985221	985296	+	76	152963972	Krad_R0017	-	^{12 Thr tRNA}
1101585	1101656	+	72	152963972	Krad_R0018	-	^{05 Gln tRNA}
1135911	1135994	+	84	152963972	Krad_R0019	-	^{15 Leu tRNA}
1264019	1264095	+	77	152963972	Krad_R0020	-	^{16 Met tRNA}
1264230	1264306	+	77	152963972	Krad_R0021	-	^{16 Met tRNA}
1326369	1326443	-	75	152963972	Krad_R0022	-	^{11 Arg tRNA}
1450054	1450125	+	72	152963972	Krad_R0023	-	^{05 Gln tRNA}
1450214	1450286	+	73	152963972	Krad_R0024	-	^{04 Glu tRNA}
1450332	1450404	+	73	152963972	Krad_R0025	-	^{04 Glu tRNA}
1718229	1718324	+	96	152963972	Krad_R0026	-	Sec tRNA
1807886	1807970	+	85	152963972	Krad_R0027	-	^{15 Leu tRNA}
3035499	3035572	+	74	152963972	Krad_R0028	-	^{15 Leu tRNA}
3146173	3146247	-	75	152963972	Krad_R0029	-	^{13 Val tRNA}
3147788	3147860	+	73	152963972	Krad_R0030	-	^{01 Gly tRNA}
3147895	3147968	+	74	152963972	Krad_R0031	-	^{19 Cys tRNA}
3148003	3148077	+	75	152963972	Krad_R0032	-	^{13 Val tRNA}
3193009	3193085	-	77	152963972	Krad_R0033	-	^{03 Pro tRNA}
3235427	3235542	-	116	152963972	Krad_R0034	-	5S ribosomal RNA
3235747	3238893	-	3147	152963972	Krad_R0035	-	23S ribosomal RNA
3239500	3241011	-	1512	152963972	Krad_R0036	-	16S ribosomal RNA
3426178	3426493	-	316	152963972	Krad_R0037	-	RNA component of RNaseP
3436766	3436841	+	76	152963972	Krad_R0038	-	^{13 Val tRNA}
3456585	3456661	-	77	152963972	Krad_R0039	-	^{16 Met tRNA}
3458764	3458836	-	73	152963972	Krad_R0040	-	^{07 Asn tRNA}
3559912	3559987	-	76	152963972	Krad_R0041	-	^{02 Ala tRNA}
3648191	3648264	-	74	152963972	Krad_R0042	-	^{03 Pro tRNA}
3648368	3648441	+	74	152963972	Krad_R0043	-	^{01 Gly tRNA}
3683908	3683980	+	73	152963972	Krad_R0044	-	^{11 Arg tRNA}
3837067	3837142	-	76	152963972	Krad_R0045	-	^{02 Ala tRNA}
3860501	3860573	+	73	152963972	Krad_R0046	-	^{11 Arg tRNA}
3877860	3877935	+	76	152963972	Krad_R0047	-	^{09 His tRNA}
3879349	3879424	+	76	152963972	Krad_R0048	-	^{10 Lys tRNA}
3918235	3918316	+	82	152963972	Krad_R0049	-	^{15 Leu tRNA}
3936472	3936836	-	365	152963972	Krad_R0050	-	tmRNA
3963079	3963194	-	116	152963972	Krad_R0051	-	5S ribosomal RNA
3963399	3966545	-	3147	152963972	Krad_R0052	-	23S ribosomal RNA
3967152	3968663	-	1512	152963972	Krad_R0053	-	16S ribosomal RNA
4229114	4229186	+	73	152963972	Krad_R0054	-	^{04 Glu tRNA}
4229288	4229361	+	74	152963972	Krad_R0055	-	^{06 Asp tRNA}
4229393	4229468	+	76	152963972	Krad_R0056	-	^{17 Phe tRNA}
4440206	4440279	-	74	152963972	Krad_R0057	-	^{01 Gly tRNA}
4577008	4577123	-	116	152963972	Krad_R0058	-	5S ribosomal RNA
4577328	4580474	-	3147	152963972	Krad_R0059	-	23S ribosomal RNA
4581081	4582592	-	1512	152963972	Krad_R0060	-	16S ribosomal RNA
4664408	4664523	-	116	152963972	Krad_R0061	-	5S ribosomal RNA
4664728	4667874	-	3147	152963972	Krad_R0062	-	23S ribosomal RNA
4668481	4669992	-	1512	152963972	Krad_R0063	-	16S ribosomal RNA
4721666	4721738	+	73	152963972	Krad_R0064	-	^{01 Gly tRNA}