Геном прокариот/Материалы:NC 009668

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009668            1895911 bp    DNA     circular BCT 25-JUL-2007
   DEFINITION  Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequence.
   ACCESSION   NC_009668
   VERSION     NC_009668.1  GI:153010078
   KEYWORDS    .
   SOURCE      Ochrobactrum anthropi ATCC 49188
     ORGANISM  Ochrobactrum anthropi ATCC 49188
               Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
               Brucellaceae; Ochrobactrum.
   REFERENCE   1  (bases 1 to 1895911)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M.,
               Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Garcia,E. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome 2 of Ochrobactrum anthropi ATCC
               49188
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 1895911)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (24-JUL-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 1895911)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M.,
               Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Garcia,E. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (10-JUL-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000759.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 2773013
               Source DNA available from Emilio Garcia (garcia12@llnl.gov)
               Bacteria available from ATCC: ATCC 49188
               Contacts: Emilio Garcia (garcia12@llnl.gov)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376)
               Additional Note: This projects consists of 2 chromosomes and 4
               plasmids.
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
151860	151951	+	92	153010078	Oant_R0052	-	Sec tRNA
299723	299796	-	74	153010078	Oant_R0053	-	^{05 Gln tRNA}
456833	458308	+	1476	153010078	Oant_R0054	-	16S ribosomal RNA
458582	458658	+	77	153010078	Oant_R0055	-	^{14 Ile tRNA}
458670	458745	+	76	153010078	Oant_R0056	-	^{02 Ala tRNA}
459318	461922	+	2605	153010078	Oant_R0057	-	23S ribosomal RNA
462119	462232	+	114	153010078	Oant_R0058	-	5S ribosomal RNA
462286	462362	+	77	153010078	Oant_R0059	-	^{16 Met tRNA}
611831	611905	-	75	153010078	Oant_R0060	-	^{01 Gly tRNA}
992217	992306	-	90	153010078	Oant_R0061	-	^{08 Ser tRNA}
1033554	1033629	-	76	153010078	Oant_R0062	-	^{10 Lys tRNA}
1068874	1068947	+	74	153010078	Oant_R0063	-	^{19 Cys tRNA}
1082135	1082209	-	75	153010078	Oant_R0064	-	^{07 Asn tRNA}
1333797	1333873	-	77	153010078	Oant_R0065	-	^{09 His tRNA}
1474675	1474750	+	76	153010078	Oant_R0066	-	^{12 Thr tRNA}
1598030	1598106	-	77	153010078	Oant_R0067	-	^{16 Met tRNA}
1598160	1598273	-	114	153010078	Oant_R0068	-	5S ribosomal RNA
1598470	1601074	-	2605	153010078	Oant_R0069	-	23S ribosomal RNA
1601647	1601722	-	76	153010078	Oant_R0070	-	^{02 Ala tRNA}
1601734	1601810	-	77	153010078	Oant_R0071	-	^{14 Ile tRNA}
1602084	1603559	-	1476	153010078	Oant_R0072	-	16S ribosomal RNA
1720645	1720719	+	75	153010078	Oant_R0073	-	^{13 Val tRNA}