Геном прокариот/Материалы:NC 009725

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009725            3918589 bp    DNA     circular BCT 13-SEP-2007
   DEFINITION  Bacillus amyloliquefaciens FZB42, complete genome.
   ACCESSION   NC_009725
   VERSION     NC_009725.1  GI:154684518
   KEYWORDS    .
   SOURCE      Bacillus amyloliquefaciens FZB42
     ORGANISM  Bacillus amyloliquefaciens FZB42
               Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus.
   REFERENCE   1  (bases 1 to 3918589)
     AUTHORS   Chen,X.H., Koumoutsi,A., Scholz,R., Eisenreich,A., Schneider,K.,
               Heinemeyer,I., Morgenstern,B., Voss,B., Hess,W.R., Reva,O.,
               Junge,H., Voigt,B., Jungblut,P.R., Vater,J., Sussmuth,R.,
               Liesegang,H., Strittmatter,A., Gottschalk,G. and Borriss,R.
     TITLE     Comparative analysis of the complete genome sequence of the plant
               growth-promoting bacterium Bacillus amyloliquefaciens FZB42
     JOURNAL   Nat. Biotechnol. 25 (9), 1007-1014 (2007)
      PUBMED   17704766
   REFERENCE   2  (bases 1 to 3918589)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (03-AUG-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3918589)
     AUTHORS   Chen,X.-H., Koumoutsi,A., Reva,O., Scholz,R., Eisenreich,A.,
               Schneider,K., Vater,J., Heinemeyer,I., Morgenstern,B., Voss,B.,
               Hess,W.R., Voigt,B., Jungblut,P.R., Junge,H., Suessmuth,R.,
               Liesegang,H., Strittmatter,A., Gottschalk,G. and Borriss,R.
     TITLE     Direct Submission
     JOURNAL   Submitted (01-FEB-2007) Institute of Biology, Bacterial Genetics,
               Humboldt University Berlin, Chausseestr. 117, Berlin 10115, Germany
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000560.
               Source DNA is available from Rainer Borriss (Humboldt University
               Berlin, Institute of Biology, Bacterial Genetics Chausseestr. 117
               D-10115 Berlin, Germany).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
9760	11314	+	1555	154684518	RBAM_000080	-	16S ribosomal RNA
11486	14418	+	2933	154684518	RBAM_000090	-	23S ribosomal RNA
14466	14579	+	114	154684518	RBAM_000100	-	5S ribosomal RNA
23312	23406	+	95	154684518	RBAM_000180	-	^{08 Ser tRNA}
27440	27756	+	317	154684518	RBAM_000240	-	SRP
31318	32872	+	1555	154684518	RBAM_000300	-	16S ribosomal RNA
33050	35982	+	2933	154684518	RBAM_000310	-	23S ribosomal RNA
36032	36145	+	114	154684518	RBAM_000320	-	5S ribosomal RNA
70870	70948	+	79	154684518	RBAM_000730	-	^{16 Met tRNA}
70956	71032	+	77	154684518	RBAM_000740	-	^{04 Glu tRNA}
91180	92734	+	1555	154684518	RBAM_000930	-	16S ribosomal RNA
92964	95893	+	2930	154684518	RBAM_000940	-	23S ribosomal RNA
95944	96057	+	114	154684518	RBAM_000950	-	5S ribosomal RNA
96083	96160	+	78	154684518	RBAM_000960	-	^{13 Val tRNA}
96164	96241	+	78	154684518	RBAM_000970	-	^{12 Thr tRNA}
96276	96353	+	78	154684518	RBAM_000980	-	^{10 Lys tRNA}
96358	96444	+	87	154684518	RBAM_000990	-	^{15 Leu tRNA}
96464	96540	+	77	154684518	RBAM_001000	-	^{01 Gly tRNA}
96553	96643	+	91	154684518	RBAM_001010	-	^{15 Leu tRNA}
96650	96728	+	79	154684518	RBAM_001020	-	^{11 Arg tRNA}
96743	96821	+	79	154684518	RBAM_001030	-	^{03 Pro tRNA}
96824	96901	+	78	154684518	RBAM_001040	-	^{02 Ala tRNA}
97065	98619	+	1555	154684518	RBAM_001050	-	16S ribosomal RNA
98849	101781	+	2933	154684518	RBAM_001060	-	23S ribosomal RNA
101829	101943	+	115	154684518	RBAM_001070	-	5S ribosomal RNA
161712	163266	+	1555	154684518	RBAM_001840	-	16S ribosomal RNA
163438	166370	+	2933	154684518	RBAM_001850	-	23S ribosomal RNA
166418	166531	+	114	154684518	RBAM_001860	-	5S ribosomal RNA
166580	166656	+	77	154684518	RBAM_001870	-	^{07 Asn tRNA}
166657	166734	+	78	154684518	RBAM_001880	-	^{12 Thr tRNA}
167072	167148	+	77	154684518	RBAM_001890	-	^{01 Gly tRNA}
167179	167255	+	77	154684518	RBAM_001900	-	^{11 Arg tRNA}
167272	167350	+	79	154684518	RBAM_001940	-	^{03 Pro tRNA}
167353	167426	+	74	154684518	RBAM_001950	-	^{02 Ala tRNA}
167427	168182	+	756	154684518	RBAM_001960	-	16S ribosomal RNA
168279	168355	+	77	154684518	RBAM_t01	-	^{14 Ile tRNA}
168370	168447	+	78	154684518	RBAM_001970	-	^{02 Ala tRNA}
168528	171457	+	2930	154684518	RBAM_001980	-	23S ribosomal RNA
171508	171621	+	114	154684518	RBAM_001990	-	5S ribosomal RNA
171984	173538	+	1555	154684518	RBAM_002000	-	16S ribosomal RNA
173710	176640	+	2931	154684518	RBAM_002010	-	23S ribosomal RNA
176690	176803	+	114	154684518	RBAM_002020	-	5S ribosomal RNA
198063	198136	+	74	154684518	RBAM_002210	-	^{04 Glu tRNA}
198138	198215	+	78	154684518	RBAM_002220	-	^{13 Val tRNA}
198219	198296	+	78	154684518	RBAM_002230	-	^{12 Thr tRNA}
198311	198397	+	87	154684518	RBAM_002240	-	^{18 Tyr tRNA}
198400	198478	+	79	154684518	RBAM_002250	-	^{05 Gln tRNA}
501647	501723	+	77	154684518	RBAM_005120	-	^{07 Asn tRNA}
501725	501817	+	93	154684518	RBAM_005130	-	^{08 Ser tRNA}
501835	501911	+	77	154684518	RBAM_005140	-	^{04 Glu tRNA}
501921	501997	+	77	154684518	RBAM_005150	-	^{05 Gln tRNA}
502029	502106	+	78	154684518	RBAM_005160	-	^{10 Lys tRNA}
502113	502196	+	84	154684518	RBAM_005170	-	^{15 Leu tRNA}
502263	502348	+	86	154684518	RBAM_005180	-	^{15 Leu tRNA}
604799	604877	+	79	154684518	RBAM_006280	-	^{11 Arg tRNA}
604884	604959	+	76	154684518	RBAM_006290	-	^{01 Gly tRNA}
605054	606608	+	1555	154684518	RBAM_006300	-	16S ribosomal RNA
606782	609711	+	2930	154684518	RBAM_006310	-	23S ribosomal RNA
609764	609878	+	115	154684518	RBAM_006320	-	5S ribosomal RNA
609896	609974	+	79	154684518	RBAM_006330	-	^{16 Met tRNA}
609983	610061	+	79	154684518	RBAM_006340	-	^{06 Asp tRNA}
876175	877729	+	1555	154684518	RBAM_008850	-	16S ribosomal RNA
877903	880832	+	2930	154684518	RBAM_008860	-	23S ribosomal RNA
880933	881046	+	114	154684518	RBAM_008870	-	5S ribosomal RNA
881058	881134	+	77	154684518	RBAM_008880	-	^{07 Asn tRNA}
881139	881230	+	92	154684518	RBAM_008890	-	^{08 Ser tRNA}
881265	881338	+	74	154684518	RBAM_008900	-	^{04 Glu tRNA}
881347	881424	+	78	154684518	RBAM_008910	-	^{13 Val tRNA}
881430	881508	+	79	154684518	RBAM_008920	-	^{16 Met tRNA}
881514	881592	+	79	154684518	RBAM_008930	-	^{06 Asp tRNA}
881601	881678	+	78	154684518	RBAM_008940	-	^{17 Phe tRNA}
881680	881754	+	75	154684518	RBAM_008950	-	^{12 Thr tRNA}
881764	881850	+	87	154684518	RBAM_008960	-	^{18 Tyr tRNA}
881859	881934	+	76	154684518	RBAM_008970	-	^{20 Trp tRNA}
881962	882039	+	78	154684518	RBAM_008980	-	^{09 His tRNA}
882047	882120	+	74	154684518	RBAM_008990	-	^{05 Gln tRNA}
882172	882248	+	77	154684518	RBAM_009000	-	^{01 Gly tRNA}
882253	882325	+	73	154684518	RBAM_009010	-	^{19 Cys tRNA}
882331	882421	+	91	154684518	RBAM_009020	-	^{15 Leu tRNA}
882665	882751	+	87	154684518	RBAM_009030	-	^{15 Leu tRNA}
897337	897412	+	76	154684518	RBAM_009170	-	^{01 Gly tRNA}
1164134	1164211	+	78	154684518	RBAM_011950	-	^{13 Val tRNA}
1974357	1974429	-	73	154684518	RBAM_018510	-	^{11 Arg tRNA}
2436822	2436897	+	76	154684518	RBAM_023090	-	^{05 Gln tRNA}
2663131	2663205	-	75	154684518	RBAM_025400	-	^{11 Arg tRNA}
2663332	2663403	-	72	154684518	RBAM_025410	-	^{11 Arg tRNA}
2920727	2920798	-	72	154684518	RBAM_027840	-	^{04 Glu tRNA}
2920802	2920892	-	91	154684518	RBAM_027850	-	^{08 Ser tRNA}
2920896	2920970	-	75	154684518	RBAM_027860	-	^{07 Asn tRNA}
2920981	2921057	-	77	154684518	RBAM_027870	-	^{14 Ile tRNA}
2921073	2921146	-	74	154684518	RBAM_027880	-	^{01 Gly tRNA}
2921155	2921230	-	76	154684518	RBAM_027890	-	^{09 His tRNA}
2921251	2921326	-	76	154684518	RBAM_027900	-	^{17 Phe tRNA}
2921337	2921413	-	77	154684518	RBAM_027910	-	^{06 Asp tRNA}
2921420	2921496	-	77	154684518	RBAM_027920	-	^{16 Met tRNA}
2921516	2921605	-	90	154684518	RBAM_027930	-	^{08 Ser tRNA}
2921616	2921692	-	77	154684518	RBAM_027940	-	^{16 Met tRNA}
2921695	2921771	-	77	154684518	RBAM_027950	-	^{16 Met tRNA}
2921792	2921864	-	73	154684518	RBAM_027960	-	^{02 Ala tRNA}
2921869	2921945	-	77	154684518	RBAM_027970	-	^{03 Pro tRNA}
2921963	2922039	-	77	154684518	RBAM_027980	-	^{11 Arg tRNA}
2922049	2922134	-	86	154684518	RBAM_027990	-	^{15 Leu tRNA}
2922154	2922228	-	75	154684518	RBAM_028000	-	^{01 Gly tRNA}
2922235	2922321	-	87	154684518	RBAM_028010	-	^{15 Leu tRNA}
2922332	2922407	-	76	154684518	RBAM_028020	-	^{10 Lys tRNA}
2922445	2922520	-	76	154684518	RBAM_028030	-	^{12 Thr tRNA}
2922550	2922625	-	76	154684518	RBAM_028040	-	^{13 Val tRNA}
2922653	2922764	-	112	154684518	RBAM_028050	-	5S ribosomal RNA
2922817	2925745	-	2929	154684518	RBAM_028060	-	23S ribosomal RNA
2925827	2925902	-	76	154684518	RBAM_028070	-	^{02 Ala tRNA}
2925919	2925995	-	77	154684518	RBAM_028080	-	^{14 Ile tRNA}
2926092	2927644	-	1553	154684518	RBAM_028090	-	16S ribosomal RNA
2940721	2940796	-	76	154684518	RBAM_028240	-	^{02 Ala tRNA}
3296208	3296283	-	76	154684518	RBAM_031810	-	^{11 Arg tRNA}
3852375	3852447	-	73	154684518	RBAM_037410	-	^{17 Phe tRNA}
3852484	3852560	-	77	154684518	RBAM_037420	-	^{06 Asp tRNA}
3852645	3852716	-	72	154684518	RBAM_037430	-	^{04 Glu tRNA}
3852725	3852800	-	76	154684518	RBAM_037440	-	^{10 Lys tRNA}