Геном прокариот/Материалы:NC 009767

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009767            5723298 bp    DNA     circular BCT 04-SEP-2007
   DEFINITION  Roseiflexus castenholzii DSM 13941, complete genome.
   ACCESSION   NC_009767
   VERSION     NC_009767.1  GI:156740028
   KEYWORDS    .
   SOURCE      Roseiflexus castenholzii DSM 13941
     ORGANISM  Roseiflexus castenholzii DSM 13941
               Bacteria; Chloroflexi; Chloroflexales; Chloroflexaceae;
               Roseiflexus.
   REFERENCE   1  (bases 1 to 5723298)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Thompson,L.S., Brettin,T., Bruce,D.,
               Detter,J.C., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M.,
               Hauser,L., Kyrpides,N., Mikhailova,N., Bryant,D.A., Hanada,S.,
               Tsukatani,Y. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Roseiflexus castenholzii DSM 13941
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5723298)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (04-SEP-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5723298)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Thompson,L.S., Brettin,T., Bruce,D.,
               Detter,J.C., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M.,
               Hauser,L., Kyrpides,N., Mikhailova,N., Bryant,D.A., Hanada,S.,
               Tsukatani,Y. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (20-AUG-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000804.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000375
               Source DNA available from Donald A. Bryant (dab14@psu.edu)
               Bacteria available from DSMZ: DSM 13941
               Contacts: Donald A. Bryant (dab14@psu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
41302	41378	+	77	156740028	Rcas_R0001	-	^{03 Pro tRNA}
75981	76055	+	75	156740028	Rcas_R0002	-	^{01 Gly tRNA}
133844	133920	+	77	156740028	Rcas_R0003	-	^{04 Glu tRNA}
196893	196967	-	75	156740028	Rcas_R0004	-	^{12 Thr tRNA}
258771	258844	-	74	156740028	Rcas_R0005	-	^{01 Gly tRNA}
540627	540702	+	76	156740028	Rcas_R0006	-	^{11 Arg tRNA}
872572	872647	-	76	156740028	Rcas_R0007	-	^{16 Met tRNA}
886184	886278	-	95	156740028	Rcas_R0008	-	SRP RNA; RNA component of signal recognition particle
962602	962675	+	74	156740028	Rcas_R0009	-	^{05 Gln tRNA}
1572991	1573075	-	85	156740028	Rcas_R0010	-	^{15 Leu tRNA}
1586291	1586366	-	76	156740028	Rcas_R0011	-	^{06 Asp tRNA}
1586377	1586453	-	77	156740028	Rcas_R0012	-	^{04 Glu tRNA}
1609324	1609399	-	76	156740028	Rcas_R0013	-	^{17 Phe tRNA}
1609442	1609517	-	76	156740028	Rcas_R0014	-	^{13 Val tRNA}
1609519	1609607	-	89	156740028	Rcas_R0015	-	^{15 Leu tRNA}
1757168	1757243	-	76	156740028	Rcas_R0016	-	^{12 Thr tRNA}
1846648	1846722	+	75	156740028	Rcas_R0017	-	^{07 Asn tRNA}
1881873	1882239	-	367	156740028	Rcas_R0018	-	tmRNA
1922170	1922245	+	76	156740028	Rcas_R0019	-	^{11 Arg tRNA}
2187193	2187269	+	77	156740028	Rcas_R0020	-	^{14 Ile tRNA}
2187313	2187388	+	76	156740028	Rcas_R0021	-	^{02 Ala tRNA}
2629831	2629916	+	86	156740028	Rcas_R0022	-	^{15 Leu tRNA}
2629938	2630014	+	77	156740028	Rcas_R0023	-	^{03 Pro tRNA}
2784838	2784914	-	77	156740028	Rcas_R0024	-	^{13 Val tRNA}
3224354	3224428	+	75	156740028	Rcas_R0025	-	^{16 Met tRNA}
3492830	3492920	-	91	156740028	Rcas_R0026	-	^{08 Ser tRNA}
3492941	3493032	-	92	156740028	Rcas_R0027	-	^{08 Ser tRNA}
3493071	3493146	-	76	156740028	Rcas_R0028	-	^{20 Trp tRNA}
3496423	3496513	+	91	156740028	Rcas_R0029	-	^{08 Ser tRNA}
3602007	3602081	-	75	156740028	Rcas_R0030	-	^{10 Lys tRNA}
3676935	3677021	+	87	156740028	Rcas_R0031	-	^{15 Leu tRNA}
3677058	3677131	+	74	156740028	Rcas_R0032	-	^{05 Gln tRNA}
3758719	3758795	-	77	156740028	Rcas_R0033	-	^{11 Arg tRNA}
3835323	3835408	-	86	156740028	Rcas_R0034	-	^{15 Leu tRNA}
3856207	3856283	+	77	156740028	Rcas_R0035	-	^{03 Pro tRNA}
3882829	3882903	-	75	156740028	Rcas_R0036	-	^{16 Met tRNA}
3882909	3883024	-	116	156740028	Rcas_R0037	-	5S ribosomal RNA
3883094	3886016	-	2923	156740028	Rcas_R0038	-	23S ribosomal RNA
3886210	3887678	-	1469	156740028	Rcas_R0039	-	16S ribosomal RNA
4059892	4059967	+	76	156740028	Rcas_R0040	-	^{02 Ala tRNA}
4059974	4060049	+	76	156740028	Rcas_R0041	-	^{02 Ala tRNA}
4361874	4361948	-	75	156740028	Rcas_R0042	-	^{19 Cys tRNA}
4620290	4620366	+	77	156740028	Rcas_R0043	-	^{11 Arg tRNA}
4620422	4620511	+	90	156740028	Rcas_R0044	-	^{08 Ser tRNA}
4718817	4718891	+	75	156740028	Rcas_R0045	-	^{09 His tRNA}
4986130	4986205	-	76	156740028	Rcas_R0046	-	^{10 Lys tRNA}
5017289	5017364	+	76	156740028	Rcas_R0047	-	^{11 Arg tRNA}
5059752	5059827	-	76	156740028	Rcas_R0048	-	^{01 Gly tRNA}
5069471	5069547	-	77	156740028	Rcas_R0049	-	^{13 Val tRNA}
5183512	5184980	+	1469	156740028	Rcas_R0050	-	16S ribosomal RNA
5185174	5188096	+	2923	156740028	Rcas_R0051	-	23S ribosomal RNA
5188166	5188281	+	116	156740028	Rcas_R0052	-	5S ribosomal RNA
5188287	5188361	+	75	156740028	Rcas_R0053	-	^{16 Met tRNA}
5232470	5232546	+	77	156740028	Rcas_R0054	-	^{04 Glu tRNA}
5573172	5573247	-	76	156740028	Rcas_R0055	-	^{12 Thr tRNA}
5573324	5573410	-	87	156740028	Rcas_R0056	-	^{18 Tyr tRNA}