Материалы:NC 009778

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   LOCUS       NC_009778            4368373 bp    DNA     circular BCT 07-SEP-2007
   DEFINITION  Enterobacter sakazakii ATCC BAA-894, complete genome.
   ACCESSION   NC_009778
   VERSION     NC_009778.1  GI:156932229
   KEYWORDS    .
   SOURCE      Enterobacter sakazakii ATCC BAA-894
     ORGANISM  Enterobacter sakazakii ATCC BAA-894
               Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
               Enterobacteriaceae; Cronobacter.
   REFERENCE   1  (bases 1 to 4368373)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (06-SEP-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   2  (bases 1 to 4368373)
     AUTHORS   McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J.,
               Clifton,W.S., Latreille,P., Courtney,L., Pepin,K., Bhonagiri,V.,
               Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R.
     CONSRTM   The Enterobacter sakazakii Genome Sequencing Project
     TITLE     Direct Submission
     JOURNAL   Submitted (25-JUL-2007) Genetics, Genome Sequencing Center, 4444
               Forest Park Parkway, St. Louis, MO 63108, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000783.
               E. sakazakii--Enterobacter sakazakii is rarely encountered in
               clinical specimens, and is more prevalent in the environment and in
               food. However, Enterobacter sakazakii is strongly implicated in
               food borne diseases causing severe meningitis or enteritis,
               especially in neonates and infants (Nazarowec-White and Farber, Int
               J FoodMicrobiol. 1997 Feb;34(2):103-13).
               
               The strain of Enterobacter sakazakii being sequenced was isolated
               from powdered milk formula fed to a hospitalized neonate that
               developed an infection (Centers for Disease Control and
               Prevention). It is available from the American Type Culture
               Collection as ATCC BAA-894 or from the Salmonella Genetic Stock
               Centre as SGSC4695. The genome was sequenced to 8X coverage, using
               plasmid and fosmid libraries, and was finished to an error rate of
               less than 1 per 10,000 bases. Automated annotation was performed
               and manual annotation will continue in the labs of Michael
               McClelland and Kenneth Sanderson. The National Institute of Allergy
               and Infectious Diseases (NIAID), National Institutes of Health
               (NIH) has funded this project.
               
               Coding sequences below are predicted using GeneMark v3.3 and
               Glimmer2  v2.13. Intergenic regions not spanned by GeneMark and
               Glimmer2 were blasted against NCBI's non-redundant (NR) database
               and predictions generated based on protein alignments. RNA genes
               were determined  using tRNAscan-SE 1.23 or Rfam v8.0. This sequence
               was finished as follows unless otherwise noted: all regions were
               double stranded, sequenced with an alternate chemistries or covered
               by high quality data(i.e., phred quality >=30);an attempt was made
               to resolve all sequencing problems, such as compressions and
               repeats; all regionswere covered by sequence from more than one m13
               subclone.
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
24930	25461	+	532	156932229	ESA_00047	-	small subunit ribosomal RNA
26515	26588	+	74	156932229	ESA_00048	-	^{14 Ile tRNA}
26703	26775	+	73	156932229	ESA_00049	-	^{02 Ala tRNA}
29940	30055	+	116	156932229	ESA_00051	-	5S ribosomal RNA
133135	133207	-	73	156932229	ESA_00146	-	^{17 Phe tRNA}
157866	157938	+	73	156932229	ESA_00172	-	^{01 Gly tRNA}
157976	158048	+	73	156932229	ESA_00173	-	^{01 Gly tRNA}
158085	158157	+	73	156932229	ESA_00174	-	^{01 Gly tRNA}
287435	287507	-	73	156932229	ESA_00311	-	^{17 Phe tRNA}
324788	324860	-	73	156932229	ESA_00352	-	^{16 Met tRNA}
395295	395478	-	184	156932229	ESA_00417	-	6S / SsrS RNA
419832	419902	+	71	156932229	ESA_00444	-	^{01 Gly tRNA}
443904	443986	+	83	156932229	ESA_00471	-	SraE/RygA/RygB family RNA
472501	472574	-	74	156932229	ESA_00495	-	^{16 Met tRNA}
472619	472692	-	74	156932229	ESA_00496	-	^{16 Met tRNA}
477054	477199	-	146	156932229	ESA_00502	-	GcvB RNA
487253	487598	+	346	156932229	ESA_00513	-	CsrB/RsmB RNA family
545730	545819	+	90	156932229	ESA_00572	-	^{08 Ser tRNA}
545827	545900	+	74	156932229	ESA_00573	-	^{11 Arg tRNA}
545966	546039	+	74	156932229	ESA_00574	-	^{11 Arg tRNA}
546235	546308	+	74	156932229	ESA_00575	-	^{11 Arg tRNA}
546374	546447	+	74	156932229	ESA_00576	-	^{11 Arg tRNA}
549429	549503	-	75	156932229	ESA_00580	-	SraD RNA
602001	602363	-	363	156932229	ESA_00631	-	tmRNA
629793	630324	+	532	156932229	ESA_00663	-	small subunit ribosomal RNA
631378	631451	+	74	156932229	ESA_00664	-	^{14 Ile tRNA}
631488	631560	+	73	156932229	ESA_00665	-	^{02 Ala tRNA}
634728	634843	+	116	156932229	ESA_00668	-	5S ribosomal RNA
658250	658415	+	166	156932229	ESA_00692	-	rncO
672564	672711	-	148	156932229	ESA_00705	-	tke1 RNA
810614	810686	-	73	156932229	ESA_00837	-	^{10 Lys tRNA}
810694	810766	-	73	156932229	ESA_00838	-	^{13 Val tRNA}
810818	810890	-	73	156932229	ESA_00839	-	^{13 Val tRNA}
810934	811006	-	73	156932229	ESA_00840	-	^{13 Val tRNA}
813681	813753	+	73	156932229	ESA_00844	-	^{02 Ala tRNA}
813801	813873	+	73	156932229	ESA_00845	-	^{02 Ala tRNA}
837242	837313	-	72	156932229	ESA_00866	-	^{11 Arg tRNA}
948230	948323	-	94	156932229	ESA_00973	-	MicF RNA
1009913	1009986	-	74	156932229	ESA_01047	-	^{03 Pro tRNA}
1099136	1099221	-	86	156932229	ESA_01137	-	RyeE RNA
1181722	1181794	-	73	156932229	ESA_01213	-	^{07 Asn tRNA}
1190130	1190202	-	73	156932229	ESA_01219	-	^{07 Asn tRNA}
1194646	1194718	-	73	156932229	ESA_01223	-	^{07 Asn tRNA}
1198640	1198712	-	73	156932229	ESA_01227	-	^{07 Asn tRNA}
1199705	1199791	+	87	156932229	ESA_01229	-	^{08 Ser tRNA}
1272530	1272602	+	73	156932229	ESA_01312	-	^{01 Gly tRNA}
1272745	1272828	+	84	156932229	ESA_01313	-	^{15 Leu tRNA}
1356623	1356873	-	251	156932229	ESA_01403	-	SraC/RyeA RNA
1356732	1356831	+	100	156932229	ESA_01402	-	RyeB RNA
1477126	1477207	-	82	156932229	ESA_01526	-	^{18 Tyr tRNA}
1477244	1477413	-	170	156932229	ESA_01527	-	RtT RNA
1477422	1477503	-	82	156932229	ESA_01528	-	^{18 Tyr tRNA}
1477532	1477709	-	178	156932229	ESA_01529	-	RtT RNA
1963902	1963975	+	74	156932229	ESA_02029	-	^{13 Val tRNA}
1963988	1964061	+	74	156932229	ESA_02030	-	^{13 Val tRNA}
2048085	2048192	+	108	156932229	ESA_02099	-	RprA RNA
2279690	2279774	+	85	156932229	ESA_02346	-	^{08 Ser tRNA}
2282784	2282868	+	85	156932229	ESA_02348	-	^{08 Ser tRNA}
2311040	2311124	-	85	156932229	ESA_02377	-	^{08 Ser tRNA}
2437466	2437544	+	79	156932229	ESA_02489	-	RybB RNA
2550071	2550143	-	73	156932229	ESA_02597	-	^{10 Lys tRNA}
2550243	2550315	-	73	156932229	ESA_02598	-	^{10 Lys tRNA}
2550397	2550469	-	73	156932229	ESA_02599	-	^{10 Lys tRNA}
2550476	2550548	-	73	156932229	ESA_02600	-	^{13 Val tRNA}
2550659	2550731	-	73	156932229	ESA_02601	-	^{10 Lys tRNA}
2622017	2622090	+	74	156932229	ESA_02666	-	^{16 Met tRNA}
2622102	2622183	+	82	156932229	ESA_02667	-	^{15 Leu tRNA}
2622209	2622280	+	72	156932229	ESA_02668	-	^{05 Gln tRNA}
2622320	2622391	+	72	156932229	ESA_02669	-	^{05 Gln tRNA}
2622425	2622498	+	74	156932229	ESA_02670	-	^{16 Met tRNA}
2622564	2622635	+	72	156932229	ESA_02672	-	^{05 Gln tRNA}
2622730	2622801	+	72	156932229	ESA_02673	-	^{05 Gln tRNA}
2631290	2631451	+	162	156932229	ESA_02681	-	SroC RNA
2701466	2701539	-	74	156932229	ESA_02755	-	^{11 Arg tRNA}
2728530	2728613	-	84	156932229	ESA_02782	-	SroB RNA
2776825	2776922	-	98	156932229	ESA_02828	-	bacterial signal recognition particle RNA
3025398	3025470	-	73	156932229	ESA_03108	-	^{12 Thr tRNA}
3040743	3040816	-	74	156932229	ESA_03123	-	^{06 Asp tRNA}
3048943	3049016	-	74	156932229	ESA_03133	-	^{06 Asp tRNA}
3049071	3049186	-	116	156932229	ESA_03134	-	5S ribosomal RNA
3052387	3052459	-	73	156932229	ESA_03136	-	^{04 Glu tRNA}
3053523	3054054	-	532	156932229	ESA_03137	-	small subunit ribosomal RNA
3089214	3089341	-	128	156932229	ESA_03174	-	t44 RNA
3322405	3322487	+	83	156932229	ESA_03382	-	^{15 Leu tRNA}
3322523	3322605	+	83	156932229	ESA_03383	-	^{15 Leu tRNA}
3322639	3322721	+	83	156932229	ESA_03384	-	^{15 Leu tRNA}
3378091	3378172	-	82	156932229	ESA_03435	-	^{15 Leu tRNA}
3478054	3478356	-	303	156932229	ESA_03534	-	RNA component of RNase P
3497697	3497865	+	169	156932229	ESA_03558	-	SraG RNA
3504696	3504769	-	74	156932229	ESA_03564	-	^{16 Met tRNA}
3504832	3504915	-	84	156932229	ESA_03565	-	^{15 Leu tRNA}
3534272	3534387	+	116	156932229	ESA_03602	-	SraH RNA
3604119	3604234	-	116	156932229	ESA_03663	-	5S ribosomal RNA
3604275	3604347	-	73	156932229	ESA_03664	-	^{12 Thr tRNA}
3604362	3604477	-	116	156932229	ESA_03665	-	5S ribosomal RNA
3607678	3607750	-	73	156932229	ESA_03668	-	^{04 Glu tRNA}
3608814	3609345	-	532	156932229	ESA_03669	-	small subunit ribosomal RNA
3640439	3640511	-	73	156932229	ESA_03700	-	^{12 Thr tRNA}
3640521	3640592	-	72	156932229	ESA_03701	-	^{01 Gly tRNA}
3640704	3640785	-	82	156932229	ESA_03702	-	^{18 Tyr tRNA}
3640798	3640870	-	73	156932229	ESA_03703	-	^{12 Thr tRNA}
3644581	3644696	-	116	156932229	ESA_03706	-	5S ribosomal RNA
3647894	3647966	-	73	156932229	ESA_03708	-	^{04 Glu tRNA}
3649030	3649561	-	532	156932229	ESA_03709	-	small subunit ribosomal RNA
3698667	3698837	-	171	156932229	ESA_03757	-	SraJ RNA
3705297	3705370	-	74	156932229	ESA_03760	-	^{03 Pro tRNA}
3705410	3705492	-	83	156932229	ESA_03761	-	^{15 Leu tRNA}
3705518	3705590	-	73	156932229	ESA_03762	-	^{09 His tRNA}
3705648	3705721	-	74	156932229	ESA_03763	-	^{11 Arg tRNA}
3738718	3738790	-	73	156932229	ESA_03792	-	^{20 Trp tRNA}
3738802	3738875	-	74	156932229	ESA_03793	-	^{06 Asp tRNA}
3738930	3739045	-	116	156932229	ESA_03794	-	5S ribosomal RNA
3742210	3742282	-	73	156932229	ESA_03796	-	^{02 Ala tRNA}
3742319	3742392	-	74	156932229	ESA_03797	-	^{14 Ile tRNA}
3743446	3743977	-	532	156932229	ESA_03798	-	small subunit ribosomal RNA
3976772	3977303	+	532	156932229	ESA_04030	-	small subunit ribosomal RNA
3978367	3978439	+	73	156932229	ESA_04031	-	^{04 Glu tRNA}
3978644	3981547	+	2904	156932229	ESA_04408	-	23S ribosomal RNA
3981639	3981754	+	116	156932229	ESA_04032	-	5S ribosomal RNA
3989372	3989490	+	119	156932229	ESA_04041	-	Spot 42 RNA
3990443	3990707	+	265	156932229	ESA_04043	-	CsrC RNA family
4145660	4145733	+	74	156932229	ESA_04189	-	^{03 Pro tRNA}
4261429	4261510	+	82	156932229	ESA_04298	-	RyhB RNA