Материалы:NC 009832

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   LOCUS       NC_009832            5448853 bp    DNA     circular BCT 20-SEP-2007
   DEFINITION  Serratia proteamaculans 568, complete genome.
   ACCESSION   NC_009832
   VERSION     NC_009832.1  GI:157368249
   KEYWORDS    .
   SOURCE      Serratia proteamaculans 568
     ORGANISM  Serratia proteamaculans 568
               Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
               Enterobacteriaceae; Serratia.
   REFERENCE   1  (bases 1 to 5448853)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M.,
               Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Kim,E., Taghavi,S., Newman,L., Vangronsveld,J., van der Lelie,D.
               and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Serratia proteamaculans 568
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5448853)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (19-SEP-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5448853)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M.,
               Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Kim,E., Taghavi,S., Newman,L., Vangronsveld,J., van der Lelie,D.
               and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (12-SEP-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000826.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4002719
               Source DNA and bacteria available from Daniel van der Lelie
               (vdlelied@bnl.gov)
               Contacts: Daniel van der Lelie (vdlelied@bnl.gov)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
116207 116297 + 91 157368249 Spro_R0001 - Sec tRNA
144755 144831 + 77 157368249 Spro_R0002 - 03 Pro tRNA
196987 197063 + 77 157368249 Spro_R0003 - 11 Arg tRNA
197123 197198 + 76 157368249 Spro_R0004 - 09 His tRNA
197242 197328 + 87 157368249 Spro_R0005 - 15 Leu tRNA
197405 197481 + 77 157368249 Spro_R0006 - 03 Pro tRNA
298569 300103 + 1535 157368249 Spro_R0007 - 16S ribosomal RNA
300248 300323 + 76 157368249 Spro_R0008 - 04 Glu tRNA
300559 303468 + 2910 157368249 Spro_R0009 - 23S ribosomal RNA
303567 303682 + 116 157368249 Spro_R0010 - 5S ribosomal RNA
307568 307643 + 76 157368249 Spro_R0011 - 12 Thr tRNA
307668 307752 + 85 157368249 Spro_R0012 - 18 Tyr tRNA
307952 308026 + 75 157368249 Spro_R0013 - 01 Gly tRNA
308033 308108 + 76 157368249 Spro_R0014 - 12 Thr tRNA
336532 338066 + 1535 157368249 Spro_R0015 - 16S ribosomal RNA
338141 338217 + 77 157368249 Spro_R0016 - 14 Ile tRNA
338255 338330 + 76 157368249 Spro_R0017 - 02 Ala tRNA
338536 341444 + 2909 157368249 Spro_R0018 - 23S ribosomal RNA
341546 341661 + 116 157368249 Spro_R0019 - 5S ribosomal RNA
355873 355948 - 76 157368249 Spro_R0020 - 17 Phe tRNA
451284 451359 - 76 157368249 Spro_R0021 - 17 Phe tRNA
474644 474719 + 76 157368249 Spro_R0022 - 01 Gly tRNA
474784 474859 + 76 157368249 Spro_R0023 - 01 Gly tRNA
474915 474990 + 76 157368249 Spro_R0024 - 01 Gly tRNA
537028 537114 + 87 157368249 Spro_R0025 - 15 Leu tRNA
537175 537251 + 77 157368249 Spro_R0026 - 16 Met tRNA
627171 627255 + 85 157368249 Spro_R0027 - 15 Leu tRNA
711848 711934 - 87 157368249 Spro_R0028 - 15 Leu tRNA
711978 712064 - 87 157368249 Spro_R0029 - 15 Leu tRNA
712099 712185 - 87 157368249 Spro_R0030 - 15 Leu tRNA
942212 942304 + 93 157368249 Spro_R0031 - 08 Ser tRNA
942308 942384 + 77 157368249 Spro_R0032 - 11 Arg tRNA
942446 942522 + 77 157368249 Spro_R0033 - 11 Arg tRNA
942573 942649 + 77 157368249 Spro_R0034 - 11 Arg tRNA
983450 984984 + 1535 157368249 Spro_R0035 - 16S ribosomal RNA
985129 985204 + 76 157368249 Spro_R0036 - 04 Glu tRNA
985440 988349 + 2910 157368249 Spro_R0037 - 23S ribosomal RNA
988448 988563 + 116 157368249 Spro_R0038 - 5S ribosomal RNA
988658 988734 + 77 157368249 Spro_R0039 - 06 Asp tRNA
1011798 1011874 + 77 157368249 Spro_R0040 - 06 Asp tRNA
1225835 1225951 + 117 157368249 Spro_R0041 - SRP RNA; RNA component of signal recognition particle
1286581 1286657 + 77 157368249 Spro_R0042 - 11 Arg tRNA
1339316 1339390 - 75 157368249 Spro_R0043 - 05 Gln tRNA
1339410 1339486 - 77 157368249 Spro_R0044 - 16 Met tRNA
1339525 1339599 - 75 157368249 Spro_R0045 - 05 Gln tRNA
1339647 1339721 - 75 157368249 Spro_R0046 - 05 Gln tRNA
1339751 1339835 - 85 157368249 Spro_R0047 - 15 Leu tRNA
1339846 1339922 - 77 157368249 Spro_R0048 - 16 Met tRNA
1408541 1408616 + 76 157368249 Spro_R0049 - 10 Lys tRNA
1408649 1408724 + 76 157368249 Spro_R0050 - 13 Val tRNA
1408732 1408807 + 76 157368249 Spro_R0051 - 10 Lys tRNA
1408878 1408953 + 76 157368249 Spro_R0052 - 10 Lys tRNA
1409007 1409082 + 76 157368249 Spro_R0053 - 10 Lys tRNA
1946172 1946259 + 88 157368249 Spro_R0054 - 08 Ser tRNA
2034897 2034972 + 76 157368249 Spro_R0055 - 01 Gly tRNA
2035030 2035103 + 74 157368249 Spro_R0056 - 19 Cys tRNA
2035114 2035199 + 86 157368249 Spro_R0057 - 15 Leu tRNA
2050388 2050482 + 95 157368249 Spro_R0058 - Xaa tRNA
2115712 2115801 - 90 157368249 Spro_R0059 - 08 Ser tRNA
2116023 2116112 - 90 157368249 Spro_R0060 - 08 Ser tRNA
2390331 2390407 - 77 157368249 Spro_R0061 - 13 Val tRNA
2390429 2390505 - 77 157368249 Spro_R0062 - 13 Val tRNA
2390527 2390603 - 77 157368249 Spro_R0063 - 13 Val tRNA
2990610 2990694 + 85 157368249 Spro_R0064 - 18 Tyr tRNA
2990791 2990875 + 85 157368249 Spro_R0065 - 18 Tyr tRNA
3421738 3421827 - 90 157368249 Spro_R0066 - 08 Ser tRNA
3422811 3422886 + 76 157368249 Spro_R0067 - 07 Asn tRNA
3447048 3447123 + 76 157368249 Spro_R0068 - 07 Asn tRNA
3494641 3494716 + 76 157368249 Spro_R0069 - 07 Asn tRNA
3528610 3528685 + 76 157368249 Spro_R0070 - 07 Asn tRNA
3593930 3594006 + 77 157368249 Spro_R0071 - 03 Pro tRNA
3594665 3594740 - 76 157368249 Spro_R0072 - 12 Thr tRNA
3594747 3594834 - 88 157368249 Spro_R0073 - 08 Ser tRNA
3752729 3752803 + 75 157368249 Spro_R0074 - 11 Arg tRNA
3779490 3779565 - 76 157368249 Spro_R0075 - 02 Ala tRNA
3779626 3779701 - 76 157368249 Spro_R0076 - 02 Ala tRNA
3781664 3781739 + 76 157368249 Spro_R0077 - 13 Val tRNA
3781780 3781855 + 76 157368249 Spro_R0078 - 13 Val tRNA
3781895 3781970 + 76 157368249 Spro_R0079 - 13 Val tRNA
3781978 3782053 + 76 157368249 Spro_R0080 - 10 Lys tRNA
4081920 4082299 + 380 157368249 Spro_R0081 - tmRNA
4143910 4144025 - 116 157368249 Spro_R0082 - 5S ribosomal RNA
4144123 4147031 - 2909 157368249 Spro_R0083 - 23S ribosomal RNA
4147237 4147312 - 76 157368249 Spro_R0084 - 02 Ala tRNA
4147350 4147426 - 77 157368249 Spro_R0085 - 14 Ile tRNA
4147501 4149035 - 1535 157368249 Spro_R0086 - 16S ribosomal RNA
4210718 4210794 + 77 157368249 Spro_R0087 - 16 Met tRNA
4210862 4210938 + 77 157368249 Spro_R0088 - 16 Met tRNA
4211003 4211079 + 77 157368249 Spro_R0089 - 16 Met tRNA
4307337 4307410 - 74 157368249 Spro_R0090 - 01 Gly tRNA
4486593 4486668 + 76 157368249 Spro_R0091 - 17 Phe tRNA
4769981 4770057 + 77 157368249 Spro_R0092 - 16 Met tRNA
4802652 4802954 - 303 157368249 Spro_R0093 - RNA component of RNaseP
4993782 4993857 - 76 157368249 Spro_R0094 - 12 Thr tRNA
4993871 4993986 - 116 157368249 Spro_R0095 - 5S ribosomal RNA
4994085 4996993 - 2909 157368249 Spro_R0096 - 23S ribosomal RNA
4997229 4997304 - 76 157368249 Spro_R0097 - 04 Glu tRNA
4997449 4998983 - 1535 157368249 Spro_R0098 - 16S ribosomal RNA
5276550 5276625 - 76 157368249 Spro_R0099 - 20 Trp tRNA
5276679 5276755 - 77 157368249 Spro_R0100 - 06 Asp tRNA
5276850 5276965 - 116 157368249 Spro_R0101 - 5S ribosomal RNA
5277064 5279973 - 2910 157368249 Spro_R0102 - 23S ribosomal RNA
5280167 5280242 - 76 157368249 Spro_R0103 - 02 Ala tRNA
5280367 5280443 - 77 157368249 Spro_R0104 - 14 Ile tRNA
5280547 5282081 - 1535 157368249 Spro_R0105 - 16S ribosomal RNA
5424656 5424771 - 116 157368249 Spro_R0106 - 5S ribosomal RNA
5424869 5427778 - 2910 157368249 Spro_R0107 - 23S ribosomal RNA
5428014 5428089 - 76 157368249 Spro_R0108 - 04 Glu tRNA
5428234 5429768 - 1535 157368249 Spro_R0109 - 16S ribosomal RNA