Материалы:NC 009901

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   LOCUS       NC_009901            5174581 bp    DNA     circular BCT 09-OCT-2007
   DEFINITION  Shewanella pealeana ATCC 700345, complete genome.
   ACCESSION   NC_009901
   VERSION     NC_009901.1  GI:157959830
   KEYWORDS    .
   SOURCE      Shewanella pealeana ATCC 700345
     ORGANISM  Shewanella pealeana ATCC 700345
               Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
               Shewanellaceae; Shewanella.
   REFERENCE   1  (bases 1 to 5174581)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D.,
               Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Kim,E., Zhao,J.-S.Z., Manno,D., Hawari,J. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Shewanella pealeana ATCC 700345
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5174581)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (09-OCT-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5174581)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D.,
               Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Kim,E., Zhao,J.-S.Z., Manno,D., Hawari,J. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (02-OCT-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000851.
               URL -- http://www.jgi.doe.gov
               JGI Project ID:  4002761
               Source DNA and bacteria available from Jian-Shen Zhao
               (jian-shen.zhao@cnrc-nrc.gc.ca)
               Contacts: Jian-Shen Zhao (jian-shen.zhao@cnrc-nrc.gc.ca)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
45147 46681 + 1535 157959830 Spea_R0001 - 16S ribosomal RNA
47032 49926 + 2895 157959830 Spea_R0002 - 23S ribosomal RNA
50059 50174 + 116 157959830 Spea_R0003 - 5S ribosomal RNA
51501 53035 + 1535 157959830 Spea_R0004 - 16S ribosomal RNA
53386 56280 + 2895 157959830 Spea_R0005 - 23S ribosomal RNA
56413 56528 + 116 157959830 Spea_R0006 - 5S ribosomal RNA
182282 183816 + 1535 157959830 Spea_R0007 - 16S ribosomal RNA
183892 183968 + 77 157959830 Spea_R0008 - 14 Ile tRNA
184034 184109 + 76 157959830 Spea_R0009 - 02 Ala tRNA
184481 187375 + 2895 157959830 Spea_R0010 - 23S ribosomal RNA
187508 187623 + 116 157959830 Spea_R0011 - 5S ribosomal RNA
187724 187800 + 77 157959830 Spea_R0012 - 06 Asp tRNA
191614 191689 + 76 157959830 Spea_R0013 - 12 Thr tRNA
191698 191782 + 85 157959830 Spea_R0014 - 18 Tyr tRNA
191818 191891 + 74 157959830 Spea_R0015 - 01 Gly tRNA
235193 236727 + 1535 157959830 Spea_R0016 - 16S ribosomal RNA
237113 240007 + 2895 157959830 Spea_R0017 - 23S ribosomal RNA
240140 240255 + 116 157959830 Spea_R0018 - 5S ribosomal RNA
243642 245176 + 1535 157959830 Spea_R0019 - 16S ribosomal RNA
245526 248420 + 2895 157959830 Spea_R0020 - 23S ribosomal RNA
248554 248669 + 116 157959830 Spea_R0021 - 5S ribosomal RNA
248738 248813 + 76 157959830 Spea_R0022 - 12 Thr tRNA
248831 248946 + 116 157959830 Spea_R0023 - 5S ribosomal RNA
283442 283739 + 298 157959830 Spea_R0024 - misc_RNA
416766 416842 + 77 157959830 Spea_R0025 - 11 Arg tRNA
416882 416957 + 76 157959830 Spea_R0026 - 09 His tRNA
416999 417075 + 77 157959830 Spea_R0027 - 03 Pro tRNA
417134 417210 + 77 157959830 Spea_R0028 - 03 Pro tRNA
493722 495256 + 1535 157959830 Spea_R0029 - 16S ribosomal RNA
495607 498501 + 2895 157959830 Spea_R0030 - 23S ribosomal RNA
498634 498749 + 116 157959830 Spea_R0031 - 5S ribosomal RNA
552634 552724 - 91 157959830 Spea_R0032 - Sec tRNA
641376 641466 + 91 157959830 Spea_R0033 - 08 Ser tRNA
642639 642729 + 91 157959830 Spea_R0034 - 08 Ser tRNA
645858 647392 + 1535 157959830 Spea_R0035 - 16S ribosomal RNA
647468 647544 + 77 157959830 Spea_R0036 - 14 Ile tRNA
647610 647685 + 76 157959830 Spea_R0037 - 02 Ala tRNA
648022 650916 + 2895 157959830 Spea_R0038 - 23S ribosomal RNA
651094 651209 + 116 157959830 Spea_R0039 - 5S ribosomal RNA
728115 728199 + 85 157959830 Spea_R0040 - 15 Leu tRNA
1168942 1169018 - 77 157959830 Spea_R0041 - 16 Met tRNA
1339706 1339781 - 76 157959830 Spea_R0042 - 12 Thr tRNA
1339834 1339909 - 76 157959830 Spea_R0043 - 17 Phe tRNA
1340449 1340524 - 76 157959830 Spea_R0044 - 12 Thr tRNA
1340577 1340652 - 76 157959830 Spea_R0045 - 17 Phe tRNA
1342467 1342542 - 76 157959830 Spea_R0046 - 12 Thr tRNA
1342595 1342670 - 76 157959830 Spea_R0047 - 17 Phe tRNA
1456724 1456815 + 92 157959830 Spea_R0048 - 08 Ser tRNA
1456837 1456913 + 77 157959830 Spea_R0049 - 11 Arg tRNA
1456944 1457020 + 77 157959830 Spea_R0050 - 11 Arg tRNA
1457053 1457129 + 77 157959830 Spea_R0051 - 11 Arg tRNA
1457160 1457236 + 77 157959830 Spea_R0052 - 11 Arg tRNA
1457270 1457346 + 77 157959830 Spea_R0053 - 11 Arg tRNA
1457356 1457447 + 92 157959830 Spea_R0054 - 08 Ser tRNA
1457524 1457600 + 77 157959830 Spea_R0055 - 11 Arg tRNA
1457636 1457712 + 77 157959830 Spea_R0056 - 11 Arg tRNA
1457722 1457813 + 92 157959830 Spea_R0057 - 08 Ser tRNA
1566140 1566494 - 355 157959830 Spea_R0058 - tmRNA
1627363 1627438 - 76 157959830 Spea_R0059 - 11 Arg tRNA
1770483 1770558 - 76 157959830 Spea_R0060 - 13 Val tRNA
1770596 1770671 - 76 157959830 Spea_R0061 - 13 Val tRNA
1770709 1770784 - 76 157959830 Spea_R0062 - 13 Val tRNA
1770822 1770897 - 76 157959830 Spea_R0063 - 13 Val tRNA
1770935 1771010 - 76 157959830 Spea_R0064 - 13 Val tRNA
1771048 1771123 - 76 157959830 Spea_R0065 - 13 Val tRNA
1771161 1771236 - 76 157959830 Spea_R0066 - 13 Val tRNA
1771274 1771349 - 76 157959830 Spea_R0067 - 13 Val tRNA
1771387 1771462 - 76 157959830 Spea_R0068 - 13 Val tRNA
1771500 1771575 - 76 157959830 Spea_R0069 - 13 Val tRNA
1771615 1771690 - 76 157959830 Spea_R0070 - 13 Val tRNA
1773910 1773985 + 76 157959830 Spea_R0071 - 02 Ala tRNA
1774066 1774141 + 76 157959830 Spea_R0072 - 04 Glu tRNA
1774244 1774319 + 76 157959830 Spea_R0073 - 04 Glu tRNA
1774422 1774497 + 76 157959830 Spea_R0074 - 04 Glu tRNA
1774600 1774675 + 76 157959830 Spea_R0075 - 04 Glu tRNA
1774778 1774853 + 76 157959830 Spea_R0076 - 04 Glu tRNA
1774956 1775031 + 76 157959830 Spea_R0077 - 04 Glu tRNA
1775134 1775209 + 76 157959830 Spea_R0078 - 04 Glu tRNA
1775312 1775387 + 76 157959830 Spea_R0079 - 04 Glu tRNA
1775641 1775716 + 76 157959830 Spea_R0080 - 04 Glu tRNA
1775819 1775894 + 76 157959830 Spea_R0081 - 04 Glu tRNA
1775997 1776072 + 76 157959830 Spea_R0082 - 04 Glu tRNA
1776175 1776250 + 76 157959830 Spea_R0083 - 04 Glu tRNA
1776353 1776428 + 76 157959830 Spea_R0084 - 04 Glu tRNA
1776476 1776551 + 76 157959830 Spea_R0085 - 02 Ala tRNA
2081308 2082842 + 1535 157959830 Spea_R0086 - 16S ribosomal RNA
2083192 2086086 + 2895 157959830 Spea_R0087 - 23S ribosomal RNA
2086219 2086334 + 116 157959830 Spea_R0088 - 5S ribosomal RNA
2143274 2143350 - 77 157959830 Spea_R0089 - 03 Pro tRNA
2366164 2366240 - 77 157959830 Spea_R0090 - 16 Met tRNA
2366281 2366357 - 77 157959830 Spea_R0091 - 16 Met tRNA
2366398 2366474 - 77 157959830 Spea_R0092 - 16 Met tRNA
2366515 2366591 - 77 157959830 Spea_R0093 - 16 Met tRNA
2376218 2376308 + 91 157959830 Spea_R0094 - 08 Ser tRNA
2379767 2379842 + 76 157959830 Spea_R0095 - 01 Gly tRNA
2379856 2379929 + 74 157959830 Spea_R0096 - 19 Cys tRNA
2380015 2380100 + 86 157959830 Spea_R0097 - 15 Leu tRNA
2550857 2550932 + 76 157959830 Spea_R0098 - 01 Gly tRNA
2550946 2551019 + 74 157959830 Spea_R0099 - 19 Cys tRNA
2551115 2551200 + 86 157959830 Spea_R0100 - 15 Leu tRNA
2551835 2551908 + 74 157959830 Spea_R0101 - 19 Cys tRNA
2552004 2552089 + 86 157959830 Spea_R0102 - 15 Leu tRNA
2552569 2552642 + 74 157959830 Spea_R0103 - 19 Cys tRNA
2552775 2552860 + 86 157959830 Spea_R0104 - 15 Leu tRNA
2558019 2558109 + 91 157959830 Spea_R0105 - 08 Ser tRNA
2717566 2717655 - 90 157959830 Spea_R0106 - 08 Ser tRNA
2759730 2759806 - 77 157959830 Spea_R0107 - 16 Met tRNA
2759996 2760072 - 77 157959830 Spea_R0108 - 16 Met tRNA
2760118 2760194 - 77 157959830 Spea_R0109 - 13 Val tRNA
2760197 2760273 - 77 157959830 Spea_R0110 - 16 Met tRNA
2760309 2760385 - 77 157959830 Spea_R0111 - 13 Val tRNA
2760399 2760475 - 77 157959830 Spea_R0112 - 16 Met tRNA
2858823 2858907 + 85 157959830 Spea_R0113 - 18 Tyr tRNA
2858938 2859022 + 85 157959830 Spea_R0114 - 18 Tyr tRNA
2859108 2859192 + 85 157959830 Spea_R0115 - 18 Tyr tRNA
2859300 2859384 + 85 157959830 Spea_R0116 - 18 Tyr tRNA
2859492 2859576 + 85 157959830 Spea_R0117 - 18 Tyr tRNA
2866268 2866343 + 76 157959830 Spea_R0118 - 07 Asn tRNA
2866389 2866464 + 76 157959830 Spea_R0119 - 07 Asn tRNA
2866506 2866581 + 76 157959830 Spea_R0120 - 07 Asn tRNA
2866608 2866683 + 76 157959830 Spea_R0121 - 07 Asn tRNA
2866716 2866791 + 76 157959830 Spea_R0122 - 07 Asn tRNA
2866825 2866900 + 76 157959830 Spea_R0123 - 07 Asn tRNA
2866941 2867016 + 76 157959830 Spea_R0124 - 07 Asn tRNA
2929429 2929505 - 77 157959830 Spea_R0125 - 06 Asp tRNA
2929603 2929679 - 77 157959830 Spea_R0126 - 06 Asp tRNA
2929777 2929853 - 77 157959830 Spea_R0127 - 06 Asp tRNA
2929937 2930013 - 77 157959830 Spea_R0128 - 06 Asp tRNA
3120289 3120364 - 76 157959830 Spea_R0129 - 10 Lys tRNA
3120423 3120498 - 76 157959830 Spea_R0130 - 10 Lys tRNA
3120557 3120632 - 76 157959830 Spea_R0131 - 10 Lys tRNA
3120691 3120766 - 76 157959830 Spea_R0132 - 10 Lys tRNA
3120826 3120901 - 76 157959830 Spea_R0133 - 10 Lys tRNA
3120959 3121034 - 76 157959830 Spea_R0134 - 10 Lys tRNA
3121093 3121168 - 76 157959830 Spea_R0135 - 10 Lys tRNA
3121227 3121302 - 76 157959830 Spea_R0136 - 10 Lys tRNA
3121362 3121437 - 76 157959830 Spea_R0137 - 10 Lys tRNA
3121496 3121571 - 76 157959830 Spea_R0138 - 10 Lys tRNA
3121631 3121706 - 76 157959830 Spea_R0139 - 10 Lys tRNA
3121766 3121841 - 76 157959830 Spea_R0140 - 10 Lys tRNA
3244371 3244485 - 115 157959830 Spea_R0141 - misc_RNA
3269860 3269935 - 76 157959830 Spea_R0142 - 09 His tRNA
3269944 3270020 - 77 157959830 Spea_R0143 - 11 Arg tRNA
3270084 3270160 - 77 157959830 Spea_R0144 - 03 Pro tRNA
3757983 3758059 - 77 157959830 Spea_R0145 - 16 Met tRNA
3758163 3758249 - 87 157959830 Spea_R0146 - 15 Leu tRNA
3835257 3835331 - 75 157959830 Spea_R0147 - 05 Gln tRNA
3835383 3835467 - 85 157959830 Spea_R0148 - 15 Leu tRNA
3835599 3835673 - 75 157959830 Spea_R0149 - 05 Gln tRNA
3835694 3835778 - 85 157959830 Spea_R0150 - 15 Leu tRNA
3835875 3835949 - 75 157959830 Spea_R0151 - 05 Gln tRNA
3835999 3836083 - 85 157959830 Spea_R0152 - 15 Leu tRNA
3836295 3836371 - 77 157959830 Spea_R0153 - 16 Met tRNA
3836377 3836451 - 75 157959830 Spea_R0154 - 05 Gln tRNA
3836499 3836583 - 85 157959830 Spea_R0155 - 15 Leu tRNA
3836639 3836715 - 77 157959830 Spea_R0156 - 16 Met tRNA
3836721 3836795 - 75 157959830 Spea_R0157 - 05 Gln tRNA
3836843 3836927 - 85 157959830 Spea_R0158 - 15 Leu tRNA
3836983 3837059 - 77 157959830 Spea_R0159 - 16 Met tRNA
3862885 3862961 - 77 157959830 Spea_R0160 - 20 Trp tRNA
3863129 3863205 - 77 157959830 Spea_R0161 - 20 Trp tRNA
3867049 3867164 - 116 157959830 Spea_R0162 - 5S ribosomal RNA
3867297 3870191 - 2895 157959830 Spea_R0163 - 23S ribosomal RNA
3870541 3872075 - 1535 157959830 Spea_R0164 - 16S ribosomal RNA
3882154 3882229 + 76 157959830 Spea_R0165 - 17 Phe tRNA
4331488 4331563 - 76 157959830 Spea_R0166 - 01 Gly tRNA
4331694 4331769 - 76 157959830 Spea_R0167 - 01 Gly tRNA
4331817 4331892 - 76 157959830 Spea_R0168 - 01 Gly tRNA
4332055 4332130 - 76 157959830 Spea_R0169 - 01 Gly tRNA
4332147 4332222 - 76 157959830 Spea_R0170 - 01 Gly tRNA
4332271 4332346 - 76 157959830 Spea_R0171 - 01 Gly tRNA
4616881 4616996 - 116 157959830 Spea_R0172 - 5S ribosomal RNA
4617129 4620023 - 2895 157959830 Spea_R0173 - 23S ribosomal RNA
4620395 4620470 - 76 157959830 Spea_R0174 - 02 Ala tRNA
4620536 4620612 - 77 157959830 Spea_R0175 - 14 Ile tRNA
4620688 4622222 - 1535 157959830 Spea_R0176 - 16S ribosomal RNA
5129770 5129846 - 77 157959830 Spea_R0177 - 06 Asp tRNA
5129947 5130062 - 116 157959830 Spea_R0178 - 5S ribosomal RNA
5130196 5133090 - 2895 157959830 Spea_R0179 - 23S ribosomal RNA
5133441 5134975 - 1535 157959830 Spea_R0180 - 16S ribosomal RNA