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   LOCUS       NC_008600            5257091 bp    DNA     circular BCT 18-APR-2007
   DEFINITION  Bacillus thuringiensis str. Al Hakam, complete genome.
   ACCESSION   NC_008600
   VERSION     NC_008600.1  GI:118475778
   KEYWORDS    .
   SOURCE      Bacillus thuringiensis str. Al Hakam
     ORGANISM  Bacillus thuringiensis str. Al Hakam
               Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus; Bacillus
               cereus group.
   REFERENCE   1  (bases 1 to 5257091)
     AUTHORS   Challacombe,J.F., Altherr,M.R., Xie,G., Bhotika,S.S., Brown,N.,
               Bruce,D., Campbell,C.S., Campbell,M.L., Chen,J., Chertkov,O.,
               Cleland,C., Dimitrijevic,M., Doggett,N.A., Fawcett,J.J.,
               Glavina,T., Goodwin,L.A., Green,L.D., Han,C.S., Hill,K.K.,
               Hitchcock,P., Jackson,P.J., Keim,P., Kewalramani,A.R., Longmire,J.,
               Lucas,S., Malfatti,S., Martinez,D., McMurry,K., Meincke,L.J.,
               Misra,M., Moseman,B.L., Mundt,M., Munk,A.C., Okinaka,R.T.,
               Parson-Quintana,B., Reilly,L.P., Richardson,P., Robinson,D.L.,
               Saunders,E., Tapia,R., Tesmer,J.G., Thayer,N., Thompson,L.S.,
               Tice,H., Ticknor,L.O., Wills,P.L., Gilna,P. and Brettin,T.S.
     TITLE     The Complete Genome Sequence of Bacillus thuringiensis Al Hakam
     JOURNAL   J. Bacteriol. 189, 3680-3681 (2007)
      PUBMED   17337577
   REFERENCE   2  (bases 1 to 5257091)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (28-NOV-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5257091)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Detter,J.C., Dalin,E., Tice,H., Pitluck,S., Chertkov,O.,
               Goodwin,L.A., Han,l., Munk,A.C., Saunders,E., Brettin,T.S.,
               Bruce,D., Challacombe,J.F., Gilna,P., Martinez,A.D., Misra,M.,
               Tapia,R., Thayer,N.N., Xie,G., Brown,N., Green,L.D., Hill,K.K.,
               Jackson,P.J., Longmire,J., Rubin,E. and Richardson,P.
     TITLE     Direct Submission
     JOURNAL   Submitted (14-NOV-2006) Joint Genome Institute, Department of
               Energy, 2800 Mitchell Drive, Walnut Creek, Ca 94598, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000485.
               Bacillus thuringiensis Al Hakam was collected at a suspected
               bioweapons facility in Iraq by the United Nations Special
               Commission (Genome differences that distinguish Bacillus anthracis
               from Bacillus cereus and Bacillus thuringiensis. Radnedge, L,
               Agron, PG Hill, KK, Jackson, PJ, Ticknor, LO, Keim, P, and
               Andersen, GL. Appl Environ Microbiol 2003. 69:2755-64). Plasmid and
               fosmid libraries were prepared at the Joint Genome Institute in Los
               Alamos (JGI-LANL), NM. Shotgun sequencing was performed at the JGI
               Production Genomics Facility (JGI-PGF) in Walnut Creek, CA. Draft
               assemblies were based on 246217 total reads. All libraries provided
               23x coverage of the genome.  The Phred/Phrap/Consed software
               package (www.phrap.com) was used for sequence assembly and quality
               assessment.  After the shotgun stage, reads were assembled with
               parallel phrap (High Performance Software, LLC). Possible
               mis-assemblies were corrected manually or by transposon bombing
               (Epicentre Biotechnologies) of bridging clones. Gaps between
               contigs were closed by editing in Consed, custom primer walk or PCR
               amplification. A total of 25321 additional reactions were necessary
               to close gaps and to raise the quality of the finished sequence.
               The completed genome sequence of B. thuringiensis Al Hakam achieves
               an average of 24-fold sequence coverage per base with error rate
               less than 1 in 100,000. Gene predictions were obtained using
               Glimmer and tRNAs were identified using tRNAScan-SE. Basic analysis
               of the gene predictions was performed by comparing coding sequences
               against the PFam, BLOCKS and Prodom databases. Gene definitions and
               functional classes were added manually by a team of annotators at
               JGI-LANL, using BLAST results in addition to information from the
               basic analysis.
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
9309 10762 + 1454 118475778 BALH_r16S01 - 16S ribosomal RNA
10993 11072 + 80 118475778 BALH_tIle01 - 14 Ile tRNA
11078 11156 + 79 118475778 BALH_tAla05 - 02 Ala tRNA
11249 14159 + 2911 118475778 BALH_r23S01 - 23S ribosomal RNA
14206 14324 + 119 118475778 BALH_r5S01 - 5S ribosomal RNA
21776 21871 + 96 118475778 BALH_tSer05 - 08 Ser tRNA
29109 30562 + 1454 118475778 BALH_r16S02 - 16S ribosomal RNA
30793 30872 + 80 118475778 BALH_tIle03 - 14 Ile tRNA
30878 30956 + 79 118475778 BALH_tAla03 - 02 Ala tRNA
31048 33958 + 2911 118475778 BALH_r23S02 - 23S ribosomal RNA
34005 34123 + 119 118475778 BALH_r5S02 - 5S ribosomal RNA
64436 64512 + 77 118475778 BALH_tMet02 - 16 Met tRNA
64523 64597 + 75 118475778 BALH_tGlu06 - 04 Glu tRNA
82434 83887 + 1454 118475778 BALH_r16S03 - 16S ribosomal RNA
84146 87057 + 2912 118475778 BALH_r23S03 - 23S ribosomal RNA
87158 87271 + 114 118475778 BALH_r5S03 - 5S ribosomal RNA
87277 87355 + 79 118475778 BALH_tVal07 - 13 Val tRNA
87357 87435 + 79 118475778 BALH_tThr02 - 12 Thr tRNA
87446 87524 + 79 118475778 BALH_tLys02 - 10 Lys tRNA
87537 87620 + 84 118475778 BALH_tLeu08 - 15 Leu tRNA
87647 87724 + 78 118475778 BALH_tGly03 - 01 Gly tRNA
87738 87829 + 92 118475778 BALH_tLeu04 - 15 Leu tRNA
87830 87906 + 77 118475778 BALH_tArg03 - 11 Arg tRNA
87912 87988 + 77 118475778 BALH_tPro01 - 03 Pro tRNA
87995 88073 + 79 118475778 BALH_tAla01 - 02 Ala tRNA
88149 89602 + 1454 118475778 BALH_r16S04 - 16S ribosomal RNA
89861 92771 + 2911 118475778 BALH_r23S04 - 23S ribosomal RNA
92817 92935 + 119 118475778 BALH_r5S04 - 5S ribosomal RNA
151215 152668 + 1454 118475778 BALH_r16S05 - 16S ribosomal RNA
152927 155837 + 2911 118475778 BALH_r23S05 - 23S ribosomal RNA
155923 156036 + 114 118475778 BALH_r5S05 - 5S ribosomal RNA
156046 156123 + 78 118475778 BALH_tAsn02 - 07 Asn tRNA
156125 156200 + 76 118475778 BALH_tThr05 - 12 Thr tRNA
156222 156299 + 78 118475778 BALH_tGlu01 - 04 Glu tRNA
156302 156380 + 79 118475778 BALH_tVal04 - 13 Val tRNA
156395 156481 + 87 118475778 BALH_tTyr03 - 18 Tyr tRNA
156544 156621 + 78 118475778 BALH_tGln02 - 05 Gln tRNA
156624 156702 + 79 118475778 BALH_tLys03 - 10 Lys tRNA
156705 156779 + 75 118475778 BALH_tGly01 - 01 Gly tRNA
156787 156862 + 76 118475778 BALH_tAla02 - 02 Ala tRNA
257007 257084 + 78 118475778 BALH_tAsn04 - 07 Asn tRNA
257085 257178 + 94 118475778 BALH_tSer06 - 08 Ser tRNA
257184 257261 + 78 118475778 BALH_tGlu02 - 04 Glu tRNA
257263 257341 + 79 118475778 BALH_tVal03 - 13 Val tRNA
257385 257463 + 79 118475778 BALH_tAsp02 - 06 Asp tRNA
257548 257625 + 78 118475778 BALH_tGln03 - 05 Gln tRNA
257628 257703 + 76 118475778 BALH_tLys06 - 10 Lys tRNA
257717 257805 + 89 118475778 BALH_tLeu02 - 15 Leu tRNA
257898 257977 + 80 118475778 BALH_tArg02 - 11 Arg tRNA
257979 258058 + 80 118475778 BALH_tPro02 - 03 Pro tRNA
258057 258130 + 74 118475778 BALH_tGly09 - 01 Gly tRNA
258204 259647 + 1444 118475778 BALH_r16S06 - 16S ribosomal RNA
259915 262825 + 2911 118475778 BALH_r23S06 - 23S ribosomal RNA
262872 262990 + 119 118475778 BALH_r5S06 - 5S ribosomal RNA
263000 263079 + 80 118475778 BALH_tMet08 - 16 Met tRNA
263080 263158 + 79 118475778 BALH_tAsp05 - 06 Asp tRNA
287745 289198 + 1454 118475778 BALH_r16S07 - 16S ribosomal RNA
289458 292369 + 2912 118475778 BALH_r23S07 - 23S ribosomal RNA
292415 292533 + 119 118475778 BALH_r5S07 - 5S ribosomal RNA
294991 296444 + 1454 118475778 BALH_r16S08 - 16S ribosomal RNA
296701 299611 + 2911 118475778 BALH_r23S08 - 23S ribosomal RNA
299658 299776 + 119 118475778 BALH_r5S08 - 5S ribosomal RNA
302303 303756 + 1454 118475778 BALH_r16S09 - 16S ribosomal RNA
304015 306925 + 2911 118475778 BALH_r23S09 - 23S ribosomal RNA
306973 307091 + 119 118475778 BALH_r5S09 - 5S ribosomal RNA
312307 313760 + 1454 118475778 BALH_r16S10 - 16S ribosomal RNA
314019 316929 + 2911 118475778 BALH_r23S10 - 23S ribosomal RNA
316977 317095 + 119 118475778 BALH_r5S10 - 5S ribosomal RNA
319482 320935 + 1454 118475778 BALH_r16S11 - 16S ribosomal RNA
321193 324103 + 2911 118475778 BALH_r23S11 - 23S ribosomal RNA
324151 324269 + 119 118475778 BALH_r5S11 - 5S ribosomal RNA
534455 535897 + 1443 118475778 BALH_r16S12 - 16S ribosomal RNA
536166 539078 + 2913 118475778 BALH_r23S12 - 23S ribosomal RNA
539178 539291 + 114 118475778 BALH_r5S12 - 5S ribosomal RNA
539300 539377 + 78 118475778 BALH_tAsn05 - 07 Asn tRNA
539377 539471 + 95 118475778 BALH_tSer01 - 08 Ser tRNA
539486 539563 + 78 118475778 BALH_tGlu03 - 04 Glu tRNA
539566 539644 + 79 118475778 BALH_tVal05 - 13 Val tRNA
539666 539745 + 80 118475778 BALH_tMet01 - 16 Met tRNA
539746 539824 + 79 118475778 BALH_tAsp03 - 06 Asp tRNA
539831 539909 + 79 118475778 BALH_tPhe01 - 17 Phe tRNA
539925 540003 + 79 118475778 BALH_tThr04 - 12 Thr tRNA
540011 540097 + 87 118475778 BALH_tTyr01 - 18 Tyr tRNA
540102 540178 + 77 118475778 BALH_tTrp02 - 20 Trp tRNA
540195 540273 + 79 118475778 BALH_tHis02 - 09 His tRNA
540334 540411 + 78 118475778 BALH_tGln01 - 05 Gln tRNA
540414 540491 + 78 118475778 BALH_tGly05 - 01 Gly tRNA
540503 540576 + 74 118475778 BALH_tCys01 - 19 Cys tRNA
540584 540671 + 88 118475778 BALH_tLeu06 - 15 Leu tRNA
552778 552854 + 77 118475778 BALH_tGly08 - 01 Gly tRNA
761982 763435 + 1454 118475778 BALH_r16S13 - 16S ribosomal RNA
763694 766604 + 2911 118475778 BALH_r23S13 - 23S ribosomal RNA
766706 766819 + 114 118475778 BALH_r5S13 - 5S ribosomal RNA
766825 766903 + 79 118475778 BALH_tVal02 - 13 Val tRNA
766909 766995 + 87 118475778 BALH_tTyr02 - 18 Tyr tRNA
767004 767081 + 78 118475778 BALH_tGln04 - 05 Gln tRNA
767083 767161 + 79 118475778 BALH_tLys04 - 10 Lys tRNA
767173 767256 + 84 118475778 BALH_tLeu01 - 15 Leu tRNA
767283 767360 + 78 118475778 BALH_tGly10 - 01 Gly tRNA
767374 767465 + 92 118475778 BALH_tLeu05 - 15 Leu tRNA
767466 767542 + 77 118475778 BALH_tArg01 - 11 Arg tRNA
767550 767626 + 77 118475778 BALH_tPro04 - 03 Pro tRNA
767640 767715 + 76 118475778 BALH_tAla06 - 02 Ala tRNA
767733 767828 + 96 118475778 BALH_tSer03 - 08 Ser tRNA
767881 767976 + 96 118475778 BALH_tSer07 - 08 Ser tRNA
768001 768080 + 80 118475778 BALH_tMet07 - 16 Met tRNA
768081 768159 + 79 118475778 BALH_tAsp04 - 06 Asp tRNA
768165 768243 + 79 118475778 BALH_tPhe03 - 17 Phe tRNA
768250 768325 + 76 118475778 BALH_tThr01 - 12 Thr tRNA
768329 768402 + 74 118475778 BALH_tTrp01 - 20 Trp tRNA
768410 768489 + 80 118475778 BALH_tIle04 - 14 Ile tRNA
768497 768574 + 78 118475778 BALH_tAsn01 - 07 Asn tRNA
768573 768647 + 75 118475778 BALH_tGlu04 - 04 Glu tRNA
1292399 1292474 - 76 118475778 BALH_tVal01 - 13 Val tRNA
4081628 4081704 - 77 118475778 BALH_tMet06 - 16 Met tRNA
4294665 4294741 - 77 118475778 BALH_tGly02 - 01 Gly tRNA
4666220 4666294 - 75 118475778 BALH_tGlu07 - 04 Glu tRNA
4666298 4666391 - 94 118475778 BALH_tSer04 - 08 Ser tRNA
4666396 4666473 - 78 118475778 BALH_tAsn03 - 07 Asn tRNA
4666478 4666557 - 80 118475778 BALH_tIle02 - 14 Ile tRNA
4666565 4666638 - 74 118475778 BALH_tGly07 - 01 Gly tRNA
4666649 4666727 - 79 118475778 BALH_tLys05 - 10 Lys tRNA
4666735 4666813 - 79 118475778 BALH_tThr03 - 12 Thr tRNA
4666825 4666903 - 79 118475778 BALH_tPhe04 - 17 Phe tRNA
4666913 4666991 - 79 118475778 BALH_tAsp01 - 06 Asp tRNA
4666990 4667069 - 80 118475778 BALH_tMet04 - 16 Met tRNA
4667094 4667189 - 96 118475778 BALH_tSer02 - 08 Ser tRNA
4667204 4667283 - 80 118475778 BALH_tMet03 - 16 Met tRNA
4667285 4667364 - 80 118475778 BALH_tMet05 - 16 Met tRNA
4667382 4667458 - 77 118475778 BALH_tAla04 - 02 Ala tRNA
4667472 4667548 - 77 118475778 BALH_tPro03 - 03 Pro tRNA
4667556 4667632 - 77 118475778 BALH_tArg05 - 11 Arg tRNA
4667633 4667724 - 92 118475778 BALH_tLeu03 - 15 Leu tRNA
4667738 4667815 - 78 118475778 BALH_tGly06 - 01 Gly tRNA
4667842 4667925 - 84 118475778 BALH_tLeu07 - 15 Leu tRNA
4667945 4668023 - 79 118475778 BALH_tHis01 - 09 His tRNA
4668030 4668108 - 79 118475778 BALH_tThr06 - 12 Thr tRNA
4668110 4668188 - 79 118475778 BALH_tVal06 - 13 Val tRNA
4668193 4668306 - 114 118475778 BALH_r5S14 - 5S ribosomal RNA
4668407 4671317 - 2911 118475778 BALH_r23S014 - 23S ribosomal RNA
4671585 4673028 - 1444 118475778 BALH_r16S14 - 16S ribosomal RNA
4880556 4880634 - 79 118475778 BALH_tArg04 - 11 Arg tRNA
5236468 5236543 - 76 118475778 BALH_tPhe02 - 17 Phe tRNA
5236582 5236660 - 79 118475778 BALH_tAsp06 - 06 Asp tRNA
5236679 5236753 - 75 118475778 BALH_tGlu05 - 04 Glu tRNA
5236764 5236842 - 79 118475778 BALH_tLys01 - 10 Lys tRNA