Геном прокариот/Материалы:NC 008060

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   LOCUS       NC_008060            3294563 bp    DNA     circular BCT 19-JUN-2007
   DEFINITION  Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence.
   ACCESSION   NC_008060
   VERSION     NC_008060.1  GI:107021562
   KEYWORDS    .
   SOURCE      Burkholderia cenocepacia AU 1054
     ORGANISM  Burkholderia cenocepacia AU 1054
               Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
               Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.
   REFERENCE   1  (bases 1 to 3294563)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Lykidis,A., LiPuma,J.J.,
               Konstantinidis,K., Tiedje,J.M. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome 1 of Burkholderia cenocepacia AU
               1054
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3294563)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (05-JUN-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3294563)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Lykidis,A., LiPuma,J.J.,
               Konstantinidis,K., Tiedje,J.M. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (12-MAY-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000378.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3635680
               Source DNA and bacteria available from James M Tiedje
               (tiedjej@msu.edu)
               Contacts: James M Tiedje (tiedjej@msu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. it is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
51091 51167 - 77 107021562 Bcen_R0001 - 13 Val tRNA
57385 58910 + 1526 107021562 Bcen_R0002 - 16S ribosomal RNA
59301 62181 + 2881 107021562 Bcen_R0003 - 23S ribosomal RNA
62333 62445 + 113 107021562 Bcen_R0004 - 5S ribosomal RNA
103223 103299 - 77 107021562 Bcen_R0005 - 03 Pro tRNA
208337 208683 + 347 107021562 Bcen_R0006 - RNA component of RNaseP
352508 352584 - 77 107021562 Bcen_R0007 - 10 Lys tRNA
482680 482754 - 75 107021562 Bcen_R0008 - 01 Gly tRNA
545108 545198 + 91 107021562 Bcen_R0009 - 08 Ser tRNA
557255 557342 - 88 107021562 Bcen_R0010 - 08 Ser tRNA
564666 564742 - 77 107021562 Bcen_R0011 - 11 Arg tRNA
564804 564880 - 77 107021562 Bcen_R0012 - 11 Arg tRNA
564947 565023 - 77 107021562 Bcen_R0013 - 11 Arg tRNA
574786 574861 - 76 107021562 Bcen_R0014 - 12 Thr tRNA
580656 580798 - 143 107021562 Bcen_R0015 -
604652 605021 - 370 107021562 Bcen_R0016 - tmRNA
665799 665874 - 76 107021562 Bcen_R0017 - 07 Asn tRNA
665947 666022 - 76 107021562 Bcen_R0018 - 07 Asn tRNA
712015 712090 + 76 107021562 Bcen_R0019 - 01 Gly tRNA
712144 712219 + 76 107021562 Bcen_R0020 - 01 Gly tRNA
712271 712346 + 76 107021562 Bcen_R0021 - 01 Gly tRNA
712446 712519 + 74 107021562 Bcen_R0022 - 19 Cys tRNA
809928 810044 - 117 107021562 Bcen_R0023 -
898109 898185 - 77 107021562 Bcen_R0024 - 03 Pro tRNA
907484 907560 + 77 107021562 Bcen_R0025 - 11 Arg tRNA
1083794 1083870 + 77 107021562 Bcen_R0026 - 13 Val tRNA
1095564 1095640 + 77 107021562 Bcen_R0027 - 03 Pro tRNA
1164581 1164667 - 87 107021562 Bcen_R0028 - 15 Leu tRNA
1164930 1165016 - 87 107021562 Bcen_R0029 - 15 Leu tRNA
1166305 1166391 - 87 107021562 Bcen_R0030 - 15 Leu tRNA
1179175 1179251 - 77 107021562 Bcen_R0031 - 16 Met tRNA
1187405 1187480 + 76 107021562 Bcen_R0032 - 09 His tRNA
1292169 1292404 - 236 107021562 Bcen_R0033 -
1294761 1295027 + 267 107021562 Bcen_R0034 -
1317331 1317522 - 192 107021562 Bcen_R0035 -
1782649 1782761 - 113 107021562 Bcen_R0036 - 5S ribosomal RNA
1782916 1785796 - 2881 107021562 Bcen_R0037 - 23S ribosomal RNA
1786073 1786148 - 76 107021562 Bcen_R0038 - 02 Ala tRNA
1786187 1786263 - 77 107021562 Bcen_R0039 - 14 Ile tRNA
1786326 1787852 - 1527 107021562 Bcen_R0040 - 16S ribosomal RNA
1818771 1818855 - 85 107021562 Bcen_R0041 - 15 Leu tRNA
1944051 1944125 + 75 107021562 Bcen_R0042 - 11 Arg tRNA
1962957 1963033 + 77 107021562 Bcen_R0043 - 16 Met tRNA
2043833 2044082 - 250 107021562 Bcen_R0044 -
2065365 2065449 + 85 107021562 Bcen_R0045 - 15 Leu tRNA
2259311 2259387 + 77 107021562 Bcen_R0046 - 16 Met tRNA
2294173 2294321 - 149 107021562 Bcen_R0047 -
2414430 2414506 + 77 107021562 Bcen_R0048 - 05 Gln tRNA
2751393 2751468 - 76 107021562 Bcen_R0049 - 17 Phe tRNA
2770392 2770467 + 76 107021562 Bcen_R0050 - 10 Lys tRNA
2812186 2812298 - 113 107021562 Bcen_R0051 - 5S ribosomal RNA
2812453 2815334 - 2882 107021562 Bcen_R0052 - 23S ribosomal RNA
2815610 2815685 - 76 107021562 Bcen_R0053 - 02 Ala tRNA
2815727 2815803 - 77 107021562 Bcen_R0054 - 14 Ile tRNA
2815867 2817392 - 1526 107021562 Bcen_R0055 - 16S ribosomal RNA
2935523 2935598 - 76 107021562 Bcen_R0056 - 12 Thr tRNA
2963870 2963993 - 124 107021562 Bcen_R0057 -
3040727 3040802 - 76 107021562 Bcen_R0058 - 20 Trp tRNA
3042119 3042193 - 75 107021562 Bcen_R0059 - 12 Thr tRNA
3042216 3042289 - 74 107021562 Bcen_R0060 - 01 Gly tRNA
3042333 3042418 - 86 107021562 Bcen_R0061 - 18 Tyr tRNA
3044471 3044583 - 113 107021562 Bcen_R0062 - 5S ribosomal RNA
3044735 3047615 - 2881 107021562 Bcen_R0063 - 23S ribosomal RNA
3047892 3047967 - 76 107021562 Bcen_R0064 - 02 Ala tRNA
3048006 3048082 - 77 107021562 Bcen_R0065 - 14 Ile tRNA
3048145 3049671 - 1527 107021562 Bcen_R0066 - 16S ribosomal RNA
3091966 3092041 - 76 107021562 Bcen_R0067 - 02 Ala tRNA
3198615 3198690 - 76 107021562 Bcen_R0068 - 11 Arg tRNA
3205198 3205301 + 104 107021562 Bcen_R0069 -
3205342 3205470 + 129 107021562 Bcen_R0070 -