Геном прокариот/Материалы:NC 008346

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008346            2936195 bp    DNA     circular BCT 15-SEP-2006
   DEFINITION  Syntrophomonas wolfei subsp. wolfei str. Goettingen, complete
               genome.
   ACCESSION   NC_008346
   VERSION     NC_008346.1  GI:114565576
   KEYWORDS    .
   SOURCE      Syntrophomonas wolfei subsp. wolfei str. Goettingen
     ORGANISM  Syntrophomonas wolfei subsp. wolfei str. Goettingen
               Bacteria; Firmicutes; Clostridia; Clostridiales;
               Syntrophomonadaceae; Syntrophomonas.
   REFERENCE   1  (bases 1 to 2936195)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Brettin,T., Sims,D., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E.,
               Boone,D.R., Brockman,F., Culley,D., Ferry,J., Gunsalus,R.,
               McInerney,M.J., Morrison,M., Plugge,C., Rohlin,L., Scholten,J.,
               Sieber,J., Stams,A.J.M. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Syntrophomonas wolfei subsp. wolfei str.
               Goettingen
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 2936195)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (15-SEP-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2936195)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E.,
               Boone,D.R., Brockman,F., Culley,D., Ferry,J., Gunsalus,R.,
               McInerney,M.J., Morrison,M., Plugge,C., Rohlin,L., Scholten,J.,
               Sieber,J., Stams,A.J.M. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (25-AUG-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000448.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3634478
               Source DNA and bacteria available from Michael J. McInerney
               (mcinerney@out.edu)
               Bacteria also available from DSMZ: DSM 2245B
               Contacts: Michael J. McInerney (mcinerney@out.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
14133	14222	+	90	114565576	Swol_R0001	-	^{08 Ser tRNA}
14345	14438	+	94	114565576	Swol_R0002	-	^{08 Ser tRNA}
14445	14521	+	77	114565576	Swol_R0003	-	^{11 Arg tRNA}
18046	18122	+	77	114565576	Swol_R0004	-	^{11 Arg tRNA}
18610	18704	+	95	114565576	Swol_R0005	-	^{08 Ser tRNA}
22691	22786	+	96	114565576	Swol_R0006	-	^{08 Ser tRNA}
35872	35988	+	117	114565576	Swol_R0007	-	SRP RNA; RNA component of signal recognition particle
43738	45267	+	1530	114565576	Swol_R0008	-	16S ribosomal RNA
45511	45587	+	77	114565576	Swol_R0009	-	^{14 Ile tRNA}
45777	45852	+	76	114565576	Swol_R0010	-	^{02 Ala tRNA}
45990	49518	+	3529	114565576	Swol_R0011	-	23S ribosomal RNA
49574	49687	+	114	114565576	Swol_R0012	-	5S ribosomal RNA
49802	49910	+	109	114565576	Swol_R0013	-	5S ribosomal RNA
50025	50133	+	109	114565576	Swol_R0014	-	5S ribosomal RNA
325818	326166	+	349	114565576	Swol_R0067	-	tmRNA
417882	419570	+	1689	114565576	Swol_R0015	-	16S ribosomal RNA
419845	422932	+	3088	114565576	Swol_R0016	-	23S ribosomal RNA
422988	423101	+	114	114565576	Swol_R0017	-	5S ribosomal RNA
423216	423324	+	109	114565576	Swol_R0018	-	5S ribosomal RNA
423439	423547	+	109	114565576	Swol_R0019	-	5S ribosomal RNA
741640	742011	-	372	114565576	Swol_R0068	-	RNA component of RNaseP
1053401	1054902	+	1502	114565576	Swol_R0020	-	16S ribosomal RNA
1055296	1058555	+	3260	114565576	Swol_R0021	-	23S ribosomal RNA
1058611	1058724	+	114	114565576	Swol_R0022	-	5S ribosomal RNA
1058834	1058941	+	108	114565576	Swol_R0023	-	5S ribosomal RNA
1059055	1059163	+	109	114565576	Swol_R0024	-	5S ribosomal RNA
1059277	1059385	+	109	114565576	Swol_R0025	-	5S ribosomal RNA
1059500	1059607	+	108	114565576	Swol_R0026	-	5S ribosomal RNA
1059721	1059829	+	109	114565576	Swol_R0027	-	5S ribosomal RNA
1059943	1060051	+	109	114565576	Swol_R0028	-	5S ribosomal RNA
1240598	1240672	-	75	114565576	Swol_R0029	-	^{13 Val tRNA}
1282600	1282675	-	76	114565576	Swol_R0030	-	^{04 Glu tRNA}
1282682	1282755	-	74	114565576	Swol_R0031	-	^{05 Gln tRNA}
1301163	1301237	-	75	114565576	Swol_R0032	-	^{11 Arg tRNA}
1337977	1338052	-	76	114565576	Swol_R0033	-	^{20 Trp tRNA}
1398635	1398711	-	77	114565576	Swol_R0034	-	^{10 Lys tRNA}
1408772	1408858	+	87	114565576	Swol_R0035	-	^{15 Leu tRNA}
1499295	1499383	-	89	114565576	Swol_R0036	-	^{15 Leu tRNA}
1499689	1499764	-	76	114565576	Swol_R0037	-	^{19 Cys tRNA}
1499880	1499954	-	75	114565576	Swol_R0038	-	^{01 Gly tRNA}
1499963	1500038	-	76	114565576	Swol_R0039	-	^{17 Phe tRNA}
1500072	1500147	-	76	114565576	Swol_R0040	-	^{06 Asp tRNA}
1505611	1505690	-	80	114565576	Swol_R0041	-	^{03 Pro tRNA}
1521253	1521330	-	78	114565576	Swol_R0042	-	^{03 Pro tRNA}
1724781	1724856	-	76	114565576	Swol_R0043	-	^{13 Val tRNA}
1724863	1724937	-	75	114565576	Swol_R0044	-	^{04 Glu tRNA}
1725058	1725133	-	76	114565576	Swol_R0045	-	^{16 Met tRNA}
1725266	1725340	-	75	114565576	Swol_R0046	-	^{07 Asn tRNA}
1824213	1824288	+	76	114565576	Swol_R0047	-	^{02 Ala tRNA}
1891761	1891837	+	77	114565576	Swol_R0048	-	^{03 Pro tRNA}
1987454	1987529	-	76	114565576	Swol_R0049	-	^{10 Lys tRNA}
1987541	1987615	-	75	114565576	Swol_R0050	-	^{05 Gln tRNA}
1987663	1987739	-	77	114565576	Swol_R0051	-	^{09 His tRNA}
1987764	1987840	-	77	114565576	Swol_R0052	-	^{11 Arg tRNA}
1987848	1987921	-	74	114565576	Swol_R0053	-	^{01 Gly tRNA}
2011519	2011603	+	85	114565576	Swol_R0054	-	^{15 Leu tRNA}
2196652	2196727	+	76	114565576	Swol_R0055	-	^{02 Ala tRNA}
2305544	2305628	-	85	114565576	Swol_R0056	-	^{15 Leu tRNA}
2315677	2315761	+	85	114565576	Swol_R0057	-	^{15 Leu tRNA}
2393889	2393965	-	77	114565576	Swol_R0058	-	^{03 Pro tRNA}
2618758	2618832	-	75	114565576	Swol_R0059	-	^{12 Thr tRNA}
2683333	2683409	-	77	114565576	Swol_R0060	-	^{16 Met tRNA}
2683413	2683488	-	76	114565576	Swol_R0061	-	^{12 Thr tRNA}
2683761	2683836	-	76	114565576	Swol_R0062	-	^{16 Met tRNA}
2683844	2683928	-	85	114565576	Swol_R0063	-	^{18 Tyr tRNA}
2683941	2684016	-	76	114565576	Swol_R0064	-	^{12 Thr tRNA}
2806446	2806520	-	75	114565576	Swol_R0065	-	^{01 Gly tRNA}
2890638	2890712	-	75	114565576	Swol_R0066	-	^{13 Val tRNA}