Геном прокариот/Материалы:NC 008347

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008347            3368780 bp    DNA     circular BCT 16-SEP-2006
   DEFINITION  Maricaulis maris MCS10, complete genome.
   ACCESSION   NC_008347
   VERSION     NC_008347.1  GI:114568554
   KEYWORDS    .
   SOURCE      Maricaulis maris MCS10
     ORGANISM  Maricaulis maris MCS10
               Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
               Hyphomonadaceae; Maricaulis.
   REFERENCE   1  (bases 1 to 3368780)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Saunders,E., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Viollier,P., Stephens,C. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Maricaulis maris MCS10
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3368780)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (15-SEP-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3368780)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Saunders,E., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Viollier,P., Stephens,C. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (25-AUG-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000449.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4001624
               Source DNA and bacteria available from Craig Stephens
               (cstephens@csu.edu)
               Contacts: Craig Stephens (cstephens@csu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
47339	47414	+	76	114568554	Mmar10_R0001	-	^{12 Thr tRNA}
55321	55396	+	76	114568554	Mmar10_R0002	-	^{02 Ala tRNA}
64184	64260	-	77	114568554	Mmar10_R0003	-	^{11 Arg tRNA}
104892	104967	+	76	114568554	Mmar10_R0004	-	^{02 Ala tRNA}
115309	115395	-	87	114568554	Mmar10_R0005	-	^{15 Leu tRNA}
157822	157911	+	90	114568554	Mmar10_R0006	-	^{08 Ser tRNA}
512364	512464	-	101	114568554	Mmar10_R0007	-	SRP RNA; RNA component of signal recognition particle
540399	540475	+	77	114568554	Mmar10_R0008	-	^{11 Arg tRNA}
584429	584502	+	74	114568554	Mmar10_R0009	-	^{01 Gly tRNA}
815140	815216	+	77	114568554	Mmar10_R0010	-	^{16 Met tRNA}
962062	962138	-	77	114568554	Mmar10_R0011	-	^{03 Pro tRNA}
962376	962450	+	75	114568554	Mmar10_R0012	-	^{05 Gln tRNA}
1065511	1065585	-	75	114568554	Mmar10_R0013	-	^{13 Val tRNA}
1093532	1093607	-	76	114568554	Mmar10_R0014	-	^{07 Asn tRNA}
1096865	1096938	-	74	114568554	Mmar10_R0015	-	^{19 Cys tRNA}
1149523	1149609	+	87	114568554	Mmar10_R0016	-	^{15 Leu tRNA}
1183394	1184853	+	1460	114568554	Mmar10_R0017	-	16S ribosomal RNA
1185062	1185138	+	77	114568554	Mmar10_R0018	-	^{14 Ile tRNA}
1185183	1185258	+	76	114568554	Mmar10_R0019	-	^{02 Ala tRNA}
1185546	1188292	+	2747	114568554	Mmar10_R0020	-	23S ribosomal RNA
1188374	1188488	+	115	114568554	Mmar10_R0021	-	5S ribosomal RNA
1191990	1192066	+	77	114568554	Mmar10_R0022	-	^{16 Met tRNA}
1233509	1233583	-	75	114568554	Mmar10_R0023	-	^{12 Thr tRNA}
1239076	1239150	+	75	114568554	Mmar10_R0024	-	^{17 Phe tRNA}
1464925	1465009	+	85	114568554	Mmar10_R0025	-	^{15 Leu tRNA}
1474901	1474976	+	76	114568554	Mmar10_R0026	-	^{13 Val tRNA}
1479116	1479192	+	77	114568554	Mmar10_R0027	-	^{06 Asp tRNA}
1597298	1597385	+	88	114568554	Mmar10_R0028	-	^{08 Ser tRNA}
1641946	1642022	-	77	114568554	Mmar10_R0029	-	^{11 Arg tRNA}
1642438	1642514	-	77	114568554	Mmar10_R0030	-	^{03 Pro tRNA}
1657083	1657157	-	75	114568554	Mmar10_R0031	-	^{04 Glu tRNA}
1673952	1674029	-	78	114568554	Mmar10_R0032	-	^{03 Pro tRNA}
1823339	1823429	+	91	114568554	Mmar10_R0033	-	^{08 Ser tRNA}
1910144	1910230	-	87	114568554	Mmar10_R0034	-	^{15 Leu tRNA}
1962629	1962704	-	76	114568554	Mmar10_R0035	-	^{20 Trp tRNA}
1973447	1973520	-	74	114568554	Mmar10_R0036	-	^{01 Gly tRNA}
1975486	1975571	-	86	114568554	Mmar10_R0037	-	^{18 Tyr tRNA}
1987002	1987077	+	76	114568554	Mmar10_R0038	-	^{12 Thr tRNA}
1992960	1993074	-	115	114568554	Mmar10_R0039	-	5S ribosomal RNA
1993156	1995902	-	2747	114568554	Mmar10_R0040	-	23S ribosomal RNA
1996190	1996265	-	76	114568554	Mmar10_R0041	-	^{02 Ala tRNA}
1996310	1996386	-	77	114568554	Mmar10_R0042	-	^{14 Ile tRNA}
1996595	1998054	-	1460	114568554	Mmar10_R0043	-	16S ribosomal RNA
2016191	2016267	-	77	114568554	Mmar10_R0044	-	^{09 His tRNA}
2036309	2036384	-	76	114568554	Mmar10_R0045	-	^{10 Lys tRNA}
2170920	2170995	+	76	114568554	Mmar10_R0046	-	^{10 Lys tRNA}
2220825	2221138	+	314	114568554	Mmar10_R0047	-	tmRNA
2271846	2272171	-	326	114568554	Mmar10_R0048	-	RNA component of RNaseP
2313384	2313460	-	77	114568554	Mmar10_R0049	-	^{16 Met tRNA}
2511362	2511438	+	77	114568554	Mmar10_R0050	-	^{11 Arg tRNA}
2559640	2559725	-	86	114568554	Mmar10_R0051	-	^{15 Leu tRNA}
2731514	2731588	+	75	114568554	Mmar10_R0052	-	^{13 Val tRNA}
3072404	3072493	-	90	114568554	Mmar10_R0053	-	^{08 Ser tRNA}
3221418	3221492	-	75	114568554	Mmar10_R0054	-	^{01 Gly tRNA}