Геном прокариот/Материалы:NC 008390
(перенаправлено с «Материалы:NC 008390»)
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Базовый уровень статей |
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LOCUS NC_008390 3556545 bp DNA circular BCT 27-SEP-2006
DEFINITION Burkholderia cepacia AMMD chromosome 1, complete sequence.
ACCESSION NC_008390
VERSION NC_008390.1 GI:115350056
KEYWORDS .
SOURCE Burkholderia cepacia AMMD
ORGANISM Burkholderia cepacia AMMD
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.
REFERENCE 1 (bases 1 to 3556545)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Pitluck,S., Bruce,D., Chain,P.,
Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
Hauser,L., Kyrpides,N., Kim,E., Parke,J., Coenye,T.,
Konstantinidis,K., Ramette,A., Tiedje,J. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Chromosome 1 of Burkholderia cepacia AMMD
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3556545)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (27-SEP-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3556545)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Pitluck,S., Bruce,D., Chain,P.,
Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
Hauser,L., Kyrpides,N., Kim,E., Parke,J., Coenye,T.,
Konstantinidis,K., Ramette,A., Tiedje,J. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (22-AUG-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000440.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4000046
Source DNA and bacteria available from James Tiedje
(tiedjej@msu.edu)
Contacts: James Tiedje (tiedjej@msu.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК[править]
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 11400 | 11485 | - | 86 | 115350056 | Bamb_R0001 | - | 5S ribosomal RNA |
| 11637 | 14518 | - | 2882 | 115350056 | Bamb_R0002 | - | 23S ribosomal RNA |
| 14918 | 16443 | - | 1526 | 115350056 | Bamb_R0003 | - | 16S ribosomal RNA |
| 22022 | 22098 | + | 77 | 115350056 | Bamb_R0004 | - | 13 Val tRNA |
| 165011 | 165086 | + | 76 | 115350056 | Bamb_R0005 | - | 11 Arg tRNA |
| 239177 | 239252 | + | 76 | 115350056 | Bamb_R0006 | - | 02 Ala tRNA |
| 290626 | 292151 | + | 1526 | 115350056 | Bamb_R0007 | - | 16S ribosomal RNA |
| 292215 | 292291 | + | 77 | 115350056 | Bamb_R0008 | - | 14 Ile tRNA |
| 292334 | 292409 | + | 76 | 115350056 | Bamb_R0009 | - | 02 Ala tRNA |
| 292700 | 295581 | + | 2882 | 115350056 | Bamb_R0010 | - | 23S ribosomal RNA |
| 295763 | 295875 | + | 113 | 115350056 | Bamb_R0011 | - | 5S ribosomal RNA |
| 298069 | 298154 | + | 86 | 115350056 | Bamb_R0012 | - | 18 Tyr tRNA |
| 298198 | 298271 | + | 74 | 115350056 | Bamb_R0013 | - | 01 Gly tRNA |
| 298297 | 298371 | + | 75 | 115350056 | Bamb_R0014 | - | 12 Thr tRNA |
| 299686 | 299761 | + | 76 | 115350056 | Bamb_R0015 | - | 20 Trp tRNA |
| 403358 | 403433 | + | 76 | 115350056 | Bamb_R0016 | - | 12 Thr tRNA |
| 502497 | 504022 | + | 1526 | 115350056 | Bamb_R0017 | - | 16S ribosomal RNA |
| 504085 | 504161 | + | 77 | 115350056 | Bamb_R0018 | - | 14 Ile tRNA |
| 504247 | 504322 | + | 76 | 115350056 | Bamb_R0019 | - | 02 Ala tRNA |
| 504612 | 507493 | + | 2882 | 115350056 | Bamb_R0020 | - | 23S ribosomal RNA |
| 507677 | 507789 | + | 113 | 115350056 | Bamb_R0021 | - | 5S ribosomal RNA |
| 547322 | 547398 | - | 77 | 115350056 | Bamb_R0022 | - | 03 Pro tRNA |
| 644675 | 644978 | + | 304 | 115350056 | Bamb_R0023 | - | RNA component of RNaseP |
| 755874 | 755950 | - | 77 | 115350056 | Bamb_R0024 | - | 10 Lys tRNA |
| 883412 | 883486 | - | 75 | 115350056 | Bamb_R0025 | - | 01 Gly tRNA |
| 928024 | 928114 | + | 91 | 115350056 | Bamb_R0026 | - | 08 Ser tRNA |
| 939995 | 940082 | - | 88 | 115350056 | Bamb_R0027 | - | 08 Ser tRNA |
| 947488 | 947564 | - | 77 | 115350056 | Bamb_R0028 | - | 11 Arg tRNA |
| 947626 | 947702 | - | 77 | 115350056 | Bamb_R0029 | - | 11 Arg tRNA |
| 947769 | 947845 | - | 77 | 115350056 | Bamb_R0030 | - | 11 Arg tRNA |
| 961957 | 962032 | - | 76 | 115350056 | Bamb_R0031 | - | 12 Thr tRNA |
| 1003499 | 1003787 | + | 289 | 115350056 | Bamb_R0032 | - | tmRNA |
| 1064508 | 1064583 | - | 76 | 115350056 | Bamb_R0033 | - | 07 Asn tRNA |
| 1064655 | 1064730 | - | 76 | 115350056 | Bamb_R0034 | - | 07 Asn tRNA |
| 1110837 | 1110912 | + | 76 | 115350056 | Bamb_R0035 | - | 01 Gly tRNA |
| 1110965 | 1111040 | + | 76 | 115350056 | Bamb_R0036 | - | 01 Gly tRNA |
| 1111091 | 1111166 | + | 76 | 115350056 | Bamb_R0037 | - | 01 Gly tRNA |
| 1111267 | 1111340 | + | 74 | 115350056 | Bamb_R0038 | - | 19 Cys tRNA |
| 1310921 | 1310997 | - | 77 | 115350056 | Bamb_R0039 | - | 03 Pro tRNA |
| 1320315 | 1320391 | + | 77 | 115350056 | Bamb_R0040 | - | 11 Arg tRNA |
| 1492772 | 1492848 | + | 77 | 115350056 | Bamb_R0041 | - | 13 Val tRNA |
| 1504737 | 1504813 | + | 77 | 115350056 | Bamb_R0042 | - | 03 Pro tRNA |
| 1573441 | 1573527 | - | 87 | 115350056 | Bamb_R0043 | - | 15 Leu tRNA |
| 1573734 | 1573820 | - | 87 | 115350056 | Bamb_R0044 | - | 15 Leu tRNA |
| 1595642 | 1595728 | - | 87 | 115350056 | Bamb_R0045 | - | 15 Leu tRNA |
| 1608538 | 1608614 | - | 77 | 115350056 | Bamb_R0046 | - | 16 Met tRNA |
| 1616792 | 1616867 | + | 76 | 115350056 | Bamb_R0047 | - | 09 His tRNA |
| 1952818 | 1952922 | - | 105 | 115350056 | Bamb_R0048 | - | SRP RNA; RNA component of signal recognition particle |
| 2100921 | 2100997 | - | 77 | 115350056 | Bamb_R0049 | - | 06 Asp tRNA |
| 2101021 | 2101096 | - | 76 | 115350056 | Bamb_R0050 | - | 13 Val tRNA |
| 2116714 | 2116800 | - | 87 | 115350056 | Bamb_R0051 | - | 15 Leu tRNA |
| 2290767 | 2290843 | - | 77 | 115350056 | Bamb_R0052 | - | 06 Asp tRNA |
| 2290917 | 2290992 | - | 76 | 115350056 | Bamb_R0053 | - | 04 Glu tRNA |
| 2291058 | 2291134 | - | 77 | 115350056 | Bamb_R0054 | - | 06 Asp tRNA |
| 2291215 | 2291290 | - | 76 | 115350056 | Bamb_R0055 | - | 04 Glu tRNA |
| 2291354 | 2291430 | - | 77 | 115350056 | Bamb_R0056 | - | 06 Asp tRNA |
| 2291510 | 2291585 | - | 76 | 115350056 | Bamb_R0057 | - | 04 Glu tRNA |
| 2291725 | 2291800 | - | 76 | 115350056 | Bamb_R0058 | - | 02 Ala tRNA |
| 2317993 | 2318086 | - | 94 | 115350056 | Bamb_R0059 | - | 08 Ser tRNA |
| 2400267 | 2400343 | - | 77 | 115350056 | Bamb_R0060 | - | 16 Met tRNA |
| 2424859 | 2424933 | + | 75 | 115350056 | Bamb_R0061 | - | 13 Val tRNA |
| 2452752 | 2452842 | + | 91 | 115350056 | Bamb_R0062 | - | 08 Ser tRNA |
| 2487888 | 2487984 | - | 97 | 115350056 | Bamb_R0063 | - | 5S ribosomal RNA |
| 2488115 | 2490996 | - | 2882 | 115350056 | Bamb_R0064 | - | 23S ribosomal RNA |
| 2491287 | 2491362 | - | 76 | 115350056 | Bamb_R0065 | - | 02 Ala tRNA |
| 2491405 | 2491481 | - | 77 | 115350056 | Bamb_R0066 | - | 14 Ile tRNA |
| 2491545 | 2493070 | - | 1526 | 115350056 | Bamb_R0067 | - | 16S ribosomal RNA |
| 2524022 | 2524106 | - | 85 | 115350056 | Bamb_R0068 | - | 15 Leu tRNA |
| 2649022 | 2649096 | + | 75 | 115350056 | Bamb_R0069 | - | 11 Arg tRNA |
| 2665358 | 2665434 | + | 77 | 115350056 | Bamb_R0070 | - | 16 Met tRNA |
| 2678218 | 2678294 | + | 77 | 115350056 | Bamb_R0071 | - | 16 Met tRNA |
| 2784645 | 2784729 | + | 85 | 115350056 | Bamb_R0072 | - | 15 Leu tRNA |
| 2978457 | 2978533 | + | 77 | 115350056 | Bamb_R0073 | - | 16 Met tRNA |
| 3156370 | 3156446 | + | 77 | 115350056 | Bamb_R0074 | - | 05 Gln tRNA |
| 3509379 | 3509454 | - | 76 | 115350056 | Bamb_R0075 | - | 17 Phe tRNA |
| 3526870 | 3526945 | + | 76 | 115350056 | Bamb_R0076 | - | 10 Lys tRNA |