Геном прокариот/Материалы:NC 008391

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008391            2646969 bp    DNA     circular BCT 28-SEP-2006
   DEFINITION  Burkholderia cepacia AMMD chromosome 2, complete sequence.
   ACCESSION   NC_008391
   VERSION     NC_008391.1  GI:115357970
   KEYWORDS    .
   SOURCE      Burkholderia cepacia AMMD
     ORGANISM  Burkholderia cepacia AMMD
               Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
               Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.
   REFERENCE   1  (bases 1 to 2646969)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Bruce,D., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Hauser,L., Kyrpides,N., Kim,E., Parke,J., Coenye,T.,
               Konstantinidis,K., Ramette,A., Tiedje,J. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Chromosome 2 of Burkholderia cepacia AMMD
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 2646969)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (28-SEP-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2646969)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Bruce,D., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Hauser,L., Kyrpides,N., Kim,E., Parke,J., Coenye,T.,
               Konstantinidis,K., Ramette,A., Tiedje,J. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (22-AUG-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000441.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000046
               Source DNA and bacteria available from James Tiedje
               (tiedjej@msu.edu)
               Contacts: James Tiedje (tiedjej@msu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
42155	42233	+	79	115357970	Bamb_R0077	-	^{16 Met tRNA}
181325	181416	+	92	115357970	Bamb_R0078	-	Sec tRNA
1347433	1347517	+	85	115357970	Bamb_R0079	-	^{15 Leu tRNA}
1632017	1632129	-	113	115357970	Bamb_R0080	-	5S ribosomal RNA
1632357	1635238	-	2882	115357970	Bamb_R0081	-	23S ribosomal RNA
1635527	1635602	-	76	115357970	Bamb_R0082	-	^{02 Ala tRNA}
1635645	1635721	-	77	115357970	Bamb_R0083	-	^{14 Ile tRNA}
1635784	1637309	-	1526	115357970	Bamb_R0084	-	16S ribosomal RNA
2482154	2482226	-	73	115357970	Bamb_R0085	-	^{19 Cys tRNA}