Геном прокариот/Материалы:NC 008532

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008532            1856368 bp    DNA     circular BCT 14-AUG-2007
   DEFINITION  Streptococcus thermophilus LMD-9, complete genome.
   ACCESSION   NC_008532
   VERSION     NC_008532.1  GI:116626972
   KEYWORDS    .
   SOURCE      Streptococcus thermophilus LMD-9
     ORGANISM  Streptococcus thermophilus LMD-9
               Bacteria; Firmicutes; Lactobacillales; Streptococcaceae;
               Streptococcus.
   REFERENCE   1  (bases 1 to 1856368)
     AUTHORS   Makarova,K., Slesarev,A., Wolf,Y., Sorokin,A., Mirkin,B.,
               Koonin,E., Pavolv,A., Pavlova,N., Karamychev,V., Polouchine,N.,
               Shakhova,V., Grigoriev,I., Lou,Y., Rohksar,D., Lucas,S., Huang,K.,
               Goldstein,D.M., Hawkins,T., Plengvidhya,V., Welker,D., Hughes,J.,
               Goh,Y., Benson,A., Baldwin,K., Lee,J.-H., Diaz-Muniz,I., Dosti,B.,
               Smeianov,V., Wechter,W., Barabote,R., Lorca,G., Altermann,E.,
               Barrangou,R., Ganesan,B., Xie,Y., Rawsthorne,H., Tamir,D.,
               Parker,C., Breidt,F., Broadbent,J., Hutkins,R., O'Sulllivan,D.,
               Steele,J., Unlu,G., Saier,M., Klaenhammer,T., Richardson,P.,
               Kozyavkin,S., Weimer,B. and Mills,D.
     TITLE     Comparative genomics of the lactic acid bacteria
     JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 103 (42), 15611-15616 (2006)
      PUBMED   17030793
   REFERENCE   2  (bases 1 to 1856368)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (24-OCT-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 1856368)
     AUTHORS   Lucas,S., Copeland,A., Detter,J.C., Glavina del Rio,T., Pitluck,S.,
               Grigoriev,I., Rokhsar,D., Slesarev,A., Pavlov,A., Pavlova,N.,
               Karamychev,V., Polouchine,N., Shakhova,V., Kozyavkin,S.,
               Makarova,K., Koonin,E., Mills,D.A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria
               Genome Consortium and Fidelity Systems Inc.
     TITLE     Direct Submission
     JOURNAL   Submitted (22-JUN-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000419.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 2662188
               Source DNA and bacteria available from Robert Hutkins
               (rhutkins1@unl.edu)
               Contacts: Robert Hutkins (rhutkins1@unl.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Annotation done by Kira Makarova and Eugene Koonin
               Finishing done by Fidelity Systems Inc. (Gaithersburg)URL --
               http://www.fidelitysystems.com
               Project Information available at:
               http://genome.jgi-psf.org/mic_home.html
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
19146	20695	+	1550	116626972	STER_r0019	-	16S ribosomal RNA
20747	20819	+	73	116626972	STER_t0020	-	^{02 Ala tRNA}
20967	23868	+	2902	116626972	STER_r0021	-	23S ribosomal RNA
23943	24066	+	124	116626972	STER_r0022	-	5S ribosomal RNA
24070	24142	+	73	116626972	STER_t0023	-	^{13 Val tRNA}
24145	24217	+	73	116626972	STER_t0024	-	^{06 Asp tRNA}
24237	24309	+	73	116626972	STER_t0025	-	^{10 Lys tRNA}
24315	24395	+	81	116626972	STER_t0026	-	^{15 Leu tRNA}
24410	24482	+	73	116626972	STER_t0027	-	^{12 Thr tRNA}
24489	24560	+	72	116626972	STER_t0028	-	^{01 Gly tRNA}
24567	24652	+	86	116626972	STER_t0029	-	^{15 Leu tRNA}
24667	24740	+	74	116626972	STER_t0030	-	^{11 Arg tRNA}
24748	24821	+	74	116626972	STER_t0031	-	^{03 Pro tRNA}
24827	24900	+	74	116626972	STER_t0032	-	^{16 Met tRNA}
24915	24988	+	74	116626972	STER_t0033	-	^{16 Met tRNA}
25008	25097	+	90	116626972	STER_t0034	-	^{08 Ser tRNA}
25107	25180	+	74	116626972	STER_t0035	-	^{16 Met tRNA}
25184	25256	+	73	116626972	STER_t0036	-	^{17 Phe tRNA}
25269	25339	+	71	116626972	STER_t0037	-	^{01 Gly tRNA}
25373	25446	+	74	116626972	STER_t0038	-	^{14 Ile tRNA}
25451	25538	+	88	116626972	STER_t0039	-	^{08 Ser tRNA}
66808	68357	+	1550	116626972	STER_r0079	-	16S ribosomal RNA
68409	68481	+	73	116626972	STER_t0080	-	^{02 Ala tRNA}
68629	71530	+	2902	116626972	STER_r0081	-	23S ribosomal RNA
71605	71728	+	124	116626972	STER_r0082	-	5S ribosomal RNA
71732	71804	+	73	116626972	STER_t0083	-	^{13 Val tRNA}
71809	71879	+	71	116626972	STER_t0084	-	^{01 Gly tRNA}
71913	71986	+	74	116626972	STER_t0085	-	^{14 Ile tRNA}
71993	72064	+	72	116626972	STER_t0086	-	^{04 Glu tRNA}
72073	72162	+	90	116626972	STER_t0087	-	^{08 Ser tRNA}
72172	72245	+	74	116626972	STER_t0088	-	^{16 Met tRNA}
72249	72321	+	73	116626972	STER_t0089	-	^{17 Phe tRNA}
72336	72416	+	81	116626972	STER_t0090	-	^{18 Tyr tRNA}
72422	72492	+	71	116626972	STER_t0091	-	^{20 Trp tRNA}
72504	72576	+	73	116626972	STER_t0092	-	^{09 His tRNA}
72583	72654	+	72	116626972	STER_t0093	-	^{05 Gln tRNA}
72664	72747	+	84	116626972	STER_t0094	-	^{15 Leu tRNA}
82571	82641	+	71	116626972	STER_t0104	-	^{19 Cys tRNA}
141017	142566	+	1550	116626972	STER_r0168	-	16S ribosomal RNA
142618	142690	+	73	116626972	STER_t0169	-	^{02 Ala tRNA}
142838	145739	+	2902	116626972	STER_r0170	-	23S ribosomal RNA
145814	145937	+	124	116626972	STER_r0171	-	5S ribosomal RNA
145941	146013	+	73	116626972	STER_t0172	-	^{13 Val tRNA}
146016	146088	+	73	116626972	STER_t0173	-	^{06 Asp tRNA}
146108	146180	+	73	116626972	STER_t0174	-	^{10 Lys tRNA}
146186	146267	+	82	116626972	STER_t0175	-	^{15 Leu tRNA}
146282	146354	+	73	116626972	STER_t0176	-	^{12 Thr tRNA}
146361	146432	+	72	116626972	STER_t0177	-	^{01 Gly tRNA}
146439	146524	+	86	116626972	STER_t0178	-	^{15 Leu tRNA}
146539	146612	+	74	116626972	STER_t0179	-	^{11 Arg tRNA}
146620	146693	+	74	116626972	STER_t0180	-	^{03 Pro tRNA}
146823	148372	+	1550	116626972	STER_r0181	-	16S ribosomal RNA
148424	148496	+	73	116626972	STER_t0182	-	^{02 Ala tRNA}
148644	151545	+	2902	116626972	STER_r0183	-	23S ribosomal RNA
151620	151746	+	127	116626972	STER_r0184	-	5S ribosomal RNA
151747	151820	+	74	116626972	STER_t0185	-	^{07 Asn tRNA}
240635	240963	+	329	116626972	STER_r0281	-	RNA_RNaseP_classB
359455	361004	+	1550	116626972	STER_r0409	-	16S ribosomal RNA
361056	361128	+	73	116626972	STER_t0410	-	^{02 Ala tRNA}
361276	364177	+	2902	116626972	STER_r0411	-	23S ribosomal RNA
364252	364375	+	124	116626972	STER_r0412	-	5S ribosomal RNA
364379	364451	+	73	116626972	STER_t0413	-	^{13 Val tRNA}
364454	364526	+	73	116626972	STER_t0414	-	^{06 Asp tRNA}
364546	364618	+	73	116626972	STER_t0415	-	^{10 Lys tRNA}
364624	364705	+	82	116626972	STER_t0416	-	^{15 Leu tRNA}
364721	364793	+	73	116626972	STER_t0417	-	^{12 Thr tRNA}
364801	364872	+	72	116626972	STER_t0418	-	^{04 Glu tRNA}
581030	581110	+	81	116626972	STER_t0637	-	^{18 Tyr tRNA}
581179	581253	+	75	116626972	STER_t0638	-	^{05 Gln tRNA}
582642	582713	+	72	116626972	STER_t0640	-	^{11 Arg tRNA}
583008	583357	+	350	116626972	STER_s0641	-	tmRNA
1056424	1056495	-	72	116626972	STER_t1143	-	^{11 Arg tRNA}
1295508	1295579	-	72	116626972	STER_t1385	-	^{04 Glu tRNA}
1295609	1295680	-	72	116626972	STER_t1386	-	^{05 Gln tRNA}
1390866	1390936	-	71	116626972	STER_t1484	-	^{12 Thr tRNA}
1471347	1471433	-	87	116626972	STER_t1568	-	^{08 Ser tRNA}
1657087	1657169	+	83	116626972	STER_t1771	-	^{15 Leu tRNA}
1662293	1662366	-	74	116626972	STER_t1780	-	^{07 Asn tRNA}
1662369	1662495	-	127	116626972	STER_r1781	-	5S ribosomal RNA
1662570	1665470	-	2901	116626972	STER_r1782	-	23S ribosomal RNA
1665616	1665688	-	73	116626972	STER_t1783	-	^{02 Ala tRNA}
1665742	1667291	-	1550	116626972	STER_r1784	-	16S ribosomal RNA
1752198	1752283	-	86	116626972	STER_t1877	-	^{15 Leu tRNA}
1793499	1793574	-	76	116626972	STER_t1934	-	^{10 Lys tRNA}
1852325	1852398	-	74	116626972	STER_t1997	-	^{07 Asn tRNA}
1852421	1852492	-	72	116626972	STER_t1998	-	^{04 Glu tRNA}
1852680	1852753	+	74	116626972	STER_t1999	-	^{11 Arg tRNA}