Геном прокариот/Материалы:NC 008536

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   LOCUS       NC_008536            9965640 bp    DNA     circular BCT 24-OCT-2006
   DEFINITION  Solibacter usitatus Ellin6076, complete genome.
   ACCESSION   NC_008536
   VERSION     NC_008536.1  GI:116619145
   KEYWORDS    .
   SOURCE      Solibacter usitatus Ellin6076
     ORGANISM  Solibacter usitatus Ellin6076
               Bacteria; Acidobacteria; Solibacteres; Solibacterales;
               Solibacteraceae; Solibacter.
   REFERENCE   1  (bases 1 to 9965640)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Thompson,L.S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Janssen,P.H., Kuske,C.R. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Solibacter usitatus Ellin6076
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 9965640)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (24-OCT-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 9965640)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Thompson,L.S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Janssen,P.H., Kuske,C.R. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (06-OCT-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000473.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3634513
               Source DNA and bacteria available from Cheryl R. Kuske
               (kuske@lanl.gov)
               Contacts: Cheryl R. Kuske (kuske@lanl.gov)
                    Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
19687 19763 - 77 116619145 Acid_R0001 - 11 Arg tRNA
182141 182218 + 78 116619145 Acid_R0002 - 03 Pro tRNA
327532 327608 - 77 116619145 Acid_R0003 - 16 Met tRNA
348949 349025 - 77 116619145 Acid_R0004 - 16 Met tRNA
630260 630334 - 75 116619145 Acid_R0005 - 01 Gly tRNA
709547 709622 - 76 116619145 Acid_R0006 - 16 Met tRNA
746084 746160 + 77 116619145 Acid_R0007 - 13 Val tRNA
882526 882600 - 75 116619145 Acid_R0008 - 07 Asn tRNA
1209504 1209577 + 74 116619145 Acid_R0009 - 05 Gln tRNA
1248105 1249598 + 1494 116619145 Acid_R0010 - 16S ribosomal RNA
1249865 1249940 + 76 116619145 Acid_R0011 - 02 Ala tRNA
1249955 1250031 + 77 116619145 Acid_R0012 - 14 Ile tRNA
1250233 1253163 + 2931 116619145 Acid_R0013 - 23S ribosomal RNA
1253304 1253420 + 117 116619145 Acid_R0014 - 5S ribosomal RNA
1431141 1431217 - 77 116619145 Acid_R0015 - 16 Met tRNA
1688343 1688431 - 89 116619145 Acid_R0016 - 15 Leu tRNA
1691811 1691886 + 76 116619145 Acid_R0017 - 10 Lys tRNA
1811009 1811085 + 77 116619145 Acid_R0018 - 11 Arg tRNA
1969439 1970932 + 1494 116619145 Acid_R0019 - 16S ribosomal RNA
1971197 1971272 + 76 116619145 Acid_R0020 - 02 Ala tRNA
1971305 1971381 + 77 116619145 Acid_R0021 - 14 Ile tRNA
1971626 1974556 + 2931 116619145 Acid_R0022 - 23S ribosomal RNA
1974694 1974810 + 117 116619145 Acid_R0023 - 5S ribosomal RNA
1983234 1983310 + 77 116619145 Acid_R0024 - 03 Pro tRNA
2068389 2068480 + 92 116619145 Acid_R0025 - 08 Ser tRNA
2200500 2200574 + 75 116619145 Acid_R0026 - 19 Cys tRNA
2389808 2389884 + 77 116619145 Acid_R0027 - 11 Arg tRNA
2703580 2703654 - 75 116619145 Acid_R0028 - 04 Glu tRNA
2995019 2995095 - 77 116619145 Acid_R0029 - 13 Val tRNA
3409567 3409656 - 90 116619145 Acid_R0030 - 08 Ser tRNA
3488758 3488833 + 76 116619145 Acid_R0031 - 10 Lys tRNA
3585610 3585685 + 76 116619145 Acid_R0032 - 02 Ala tRNA
3673987 3674061 + 75 116619145 Acid_R0033 - 01 Gly tRNA
4008774 4008874 - 101 116619145 Acid_R0034 - SRP RNA; RNA component of signal recognition particle
4117336 4117425 + 90 116619145 Acid_R0035 - Sec tRNA
4360710 4360781 + 72 116619145 Acid_R0036 - 16 Met tRNA
4664464 4664540 - 77 116619145 Acid_R0037 - 03 Pro tRNA
4706493 4706566 - 74 116619145 Acid_R0038 - 05 Gln tRNA
4999957 5000033 - 77 116619145 Acid_R0039 - 09 His tRNA
5195913 5196108 + 196 116619145 Acid_R0040 - RNA component of RNaseP
5294404 5294752 - 349 116619145 Acid_R0041 - tmRNA
5838272 5838397 + 126 116619145 Acid_R0042 -
5945044 5945120 - 77 116619145 Acid_R0043 - 13 Val tRNA
6120101 6120177 + 77 116619145 Acid_R0044 - 06 Asp tRNA
6256025 6256111 + 87 116619145 Acid_R0045 - 15 Leu tRNA
6277952 6278028 + 77 116619145 Acid_R0046 - 11 Arg tRNA
6734555 6734632 + 78 116619145 Acid_R0047 - 04 Glu tRNA
6791461 6791536 - 76 116619145 Acid_R0048 - 17 Phe tRNA
6814760 6814849 - 90 116619145 Acid_R0049 - 08 Ser tRNA
7518659 7518734 + 76 116619145 Acid_R0050 - 12 Thr tRNA
7598057 7598134 + 78 116619145 Acid_R0051 - Xaa tRNA
7940543 7940630 + 88 116619145 Acid_R0052 - 18 Tyr tRNA
7940701 7940776 + 76 116619145 Acid_R0053 - 12 Thr tRNA
7942298 7942372 + 75 116619145 Acid_R0054 - 20 Trp tRNA
7943870 7943956 + 87 116619145 Acid_R0055 - 15 Leu tRNA
8326562 8326637 - 76 116619145 Acid_R0056 - 12 Thr tRNA
8478218 8478304 + 87 116619145 Acid_R0057 - 15 Leu tRNA
9616774 9616850 - 77 116619145 Acid_R0058 - 11 Arg tRNA
9855350 9855438 - 89 116619145 Acid_R0059 - 15 Leu tRNA
9855481 9855570 - 90 116619145 Acid_R0060 - 08 Ser tRNA
9930164 9930239 - 76 116619145 Acid_R0061 - 02 Ala tRNA
9965388 9965463 - 76 116619145 Acid_R0062 - 01 Gly tRNA