Геном прокариот/Материалы:NC 008541

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008541            4698945 bp    DNA     circular BCT 25-OCT-2006
   DEFINITION  Arthrobacter sp. FB24 chromosome 1, complete sequence.
   ACCESSION   NC_008541
   VERSION     NC_008541.1  GI:116668568
   KEYWORDS    .
   SOURCE      Arthrobacter sp. FB24
     ORGANISM  Arthrobacter sp. FB24
               Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
               Micrococcineae; Micrococcaceae; Arthrobacter.
   REFERENCE   1  (bases 1 to 4698945)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chertkov,O., Thompson,S., Brettin,T., Bruce,D., Han,C., Tapia,R.,
               Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Beasley,F., Chen,W., Jerke,K., Nakatsu,C.H. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome 1 of Arthrobacter sp. FB24
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4698945)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (25-OCT-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4698945)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chertkov,O., Thompson,S., Brettin,T., Bruce,D., Han,C., Tapia,R.,
               Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Beasley,F., Chen,W., Jerke,K., Nakatsu,C.H. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (28-AUG-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000454.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3634492
               Source DNA and bacteria available from Cindy H. Nakatsu
               (cnakatsu@purdue.edu)
               Contacts: Cindy H. Nakatsu (cnakatsu@purdue.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               Additional notes: There is an uncertain number of G/C in
               homopolimer repeats in the regions 3501583-3501612,
               3732178-3732195.
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
11842	11915	+	74	116668568	Arth_R0001	-	^{14 Ile tRNA}
12163	12238	+	76	116668568	Arth_R0002	-	^{02 Ala tRNA}
33132	33214	+	83	116668568	Arth_R0003	-	^{15 Leu tRNA}
76568	76640	+	73	116668568	Arth_R0004	-	^{10 Lys tRNA}
218923	218995	+	73	116668568	Arth_R0005	-	^{10 Lys tRNA}
421350	421422	+	73	116668568	Arth_R0006	-	^{04 Glu tRNA}
421519	421592	+	74	116668568	Arth_R0007	-	^{06 Asp tRNA}
421641	421716	+	76	116668568	Arth_R0008	-	^{17 Phe tRNA}
595991	596080	-	90	116668568	Arth_R0009	-	SRP RNA; RNA component of signal recognition particle
596911	596995	+	85	116668568	Arth_R0010	-	^{08 Ser tRNA}
687247	687336	-	90	116668568	Arth_R0011	-	^{08 Ser tRNA}
710671	710744	-	74	116668568	Arth_R0012	-	^{11 Arg tRNA}
722327	722414	-	88	116668568	Arth_R0013	-	^{08 Ser tRNA}
733106	733196	-	91	116668568	Arth_R0014	-	^{08 Ser tRNA}
760748	760820	-	73	116668568	Arth_R0015	-	^{12 Thr tRNA}
792344	793860	+	1517	116668568	Arth_R0016	-	16S ribosomal RNA
794378	797515	+	3138	116668568	Arth_R0017	-	23S ribosomal RNA
797736	797852	+	117	116668568	Arth_R0018	-	5S ribosomal RNA
816148	816224	+	77	116668568	Arth_R0019	-	^{12 Thr tRNA}
877148	877220	-	73	116668568	Arth_R0020	-	^{11 Arg tRNA}
1145794	1147310	+	1517	116668568	Arth_R0021	-	16S ribosomal RNA
1147827	1150964	+	3138	116668568	Arth_R0022	-	23S ribosomal RNA
1151187	1151303	+	117	116668568	Arth_R0023	-	5S ribosomal RNA
1251644	1251717	+	74	116668568	Arth_R0024	-	^{15 Leu tRNA}
1326164	1326235	+	72	116668568	Arth_R0025	-	^{05 Gln tRNA}
1502820	1502892	+	73	116668568	Arth_R0026	-	^{07 Asn tRNA}
1503019	1503091	+	73	116668568	Arth_R0027	-	^{07 Asn tRNA}
1509118	1509191	+	74	116668568	Arth_R0028	-	^{16 Met tRNA}
1678840	1680356	+	1517	116668568	Arth_R0029	-	16S ribosomal RNA
1680874	1684011	+	3138	116668568	Arth_R0030	-	23S ribosomal RNA
1684234	1684350	+	117	116668568	Arth_R0031	-	5S ribosomal RNA
1714644	1714720	+	77	116668568	Arth_R0032	-	^{03 Pro tRNA}
1862990	1863064	-	75	116668568	Arth_R0033	-	^{13 Val tRNA}
1863103	1863175	-	73	116668568	Arth_R0034	-	^{01 Gly tRNA}
1863231	1863305	-	75	116668568	Arth_R0035	-	^{13 Val tRNA}
1863348	1863418	-	71	116668568	Arth_R0036	-	^{19 Cys tRNA}
1863465	1863537	-	73	116668568	Arth_R0037	-	^{01 Gly tRNA}
1863854	1863928	+	75	116668568	Arth_R0038	-	^{13 Val tRNA}
1892239	1892320	+	82	116668568	Arth_R0039	-	^{15 Leu tRNA}
2436509	2436594	-	86	116668568	Arth_R0040	-	^{15 Leu tRNA}
2670834	2670906	-	73	116668568	Arth_R0041	-	^{02 Ala tRNA}
2671099	2671174	-	76	116668568	Arth_R0042	-	^{02 Ala tRNA}
2701743	2701817	-	75	116668568	Arth_R0043	-	^{03 Pro tRNA}
2701975	2702048	+	74	116668568	Arth_R0044	-	^{01 Gly tRNA}
2715875	2715947	+	73	116668568	Arth_R0045	-	^{11 Arg tRNA}
2731989	2732061	+	73	116668568	Arth_R0046	-	^{09 His tRNA}
2735957	2736294	-	338	116668568	Arth_R0068	-	RNA component of RNaseP
2756573	2756648	-	76	116668568	Arth_R0047	-	^{13 Val tRNA}
2827052	2827127	-	76	116668568	Arth_R0048	-	^{04 Glu tRNA}
2827255	2827326	-	72	116668568	Arth_R0049	-	^{05 Gln tRNA}
2854533	2854608	+	76	116668568	Arth_R0050	-	^{10 Lys tRNA}
2856320	2856401	+	82	116668568	Arth_R0051	-	^{15 Leu tRNA}
2947636	2947708	+	73	116668568	Arth_R0052	-	^{11 Arg tRNA}
2985134	2985502	-	369	116668568	Arth_R0069	-	tmRNA
3091249	3091325	-	77	116668568	Arth_R0053	-	^{16 Met tRNA}
3091514	3091587	-	74	116668568	Arth_R0054	-	^{16 Met tRNA}
3217415	3217490	-	76	116668568	Arth_R0055	-	^{02 Ala tRNA}
3364585	3364657	-	73	116668568	Arth_R0056	-	^{20 Trp tRNA}
3416184	3416260	-	77	116668568	Arth_R0057	-	^{16 Met tRNA}
3416322	3416393	-	72	116668568	Arth_R0058	-	^{12 Thr tRNA}
3444091	3444175	-	85	116668568	Arth_R0059	-	^{18 Tyr tRNA}
3828097	3828173	+	77	116668568	Arth_R0060	-	^{03 Pro tRNA}
4364506	4364579	+	74	116668568	Arth_R0061	-	^{01 Gly tRNA}
4414904	4415020	-	117	116668568	Arth_R0062	-	5S ribosomal RNA
4415241	4418378	-	3138	116668568	Arth_R0063	-	23S ribosomal RNA
4418896	4420412	-	1517	116668568	Arth_R0064	-	16S ribosomal RNA
4425408	4425524	-	117	116668568	Arth_R0065	-	5S ribosomal RNA
4425746	4428883	-	3138	116668568	Arth_R0066	-	23S ribosomal RNA
4429401	4430917	-	1517	116668568	Arth_R0067	-	16S ribosomal RNA