Геном прокариот/Материалы:NC 008542

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008542            3483902 bp    DNA     circular BCT 14-AUG-2007
   DEFINITION  Burkholderia cenocepacia HI2424 chromosome 1, complete sequence.
   ACCESSION   NC_008542
   VERSION     NC_008542.1  GI:116688024
   KEYWORDS    .
   SOURCE      Burkholderia cenocepacia HI2424
     ORGANISM  Burkholderia cenocepacia HI2424
               Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
               Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.
   REFERENCE   1  (bases 1 to 3483902)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Hauser,L., Kyrpides,N., Kim,E., LiPuma,J.J., Gonzalez,C.F.,
               Konstantinidis,K., Tiedje,J.M. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Chromosome 1 of Burkholderia cenocepacia
               HI2424
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3483902)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (26-OCT-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3483902)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Hauser,L., Kyrpides,N., Kim,E., LiPuma,J.J., Gonzalez,C.F.,
               Konstantinidis,K., Tiedje,J.M. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (30-AUG-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000458.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3635681
               Source DNA and bacteria available from James M. Tiedje
               (tiedjej@msu.edu)
               Contacts: James M. Tiedje (tiedjej@msu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
10006	10122	-	117	116688024	Bcen2424_R0001	-	5S ribosomal RNA
10273	13154	-	2882	116688024	Bcen2424_R0002	-	23S ribosomal RNA
13544	15079	-	1536	116688024	Bcen2424_R0003	-	16S ribosomal RNA
21288	21364	+	77	116688024	Bcen2424_R0004	-	^{13 Val tRNA}
168314	168389	+	76	116688024	Bcen2424_R0005	-	^{11 Arg tRNA}
334605	334680	+	76	116688024	Bcen2424_R0006	-	^{02 Ala tRNA}
376967	378502	+	1536	116688024	Bcen2424_R0007	-	16S ribosomal RNA
378563	378639	+	77	116688024	Bcen2424_R0008	-	^{14 Ile tRNA}
378681	378756	+	76	116688024	Bcen2424_R0009	-	^{02 Ala tRNA}
379032	381913	+	2882	116688024	Bcen2424_R0010	-	23S ribosomal RNA
382062	382178	+	117	116688024	Bcen2424_R0010a	-	5S ribosomal RNA
384229	384314	+	86	116688024	Bcen2424_R0011	-	^{18 Tyr tRNA}
384358	384431	+	74	116688024	Bcen2424_R0012	-	^{01 Gly tRNA}
384454	384528	+	75	116688024	Bcen2424_R0013	-	^{12 Thr tRNA}
385845	385920	+	76	116688024	Bcen2424_R0014	-	^{20 Trp tRNA}
491047	491122	+	76	116688024	Bcen2424_R0015	-	^{12 Thr tRNA}
606431	607966	+	1536	116688024	Bcen2424_R0016	-	16S ribosomal RNA
608027	608103	+	77	116688024	Bcen2424_R0017	-	^{14 Ile tRNA}
608145	608220	+	76	116688024	Bcen2424_R0018	-	^{02 Ala tRNA}
608496	611377	+	2882	116688024	Bcen2424_R0019	-	23S ribosomal RNA
611527	611643	+	117	116688024	Bcen2424_R0020	-	5S ribosomal RNA
652399	652475	-	77	116688024	Bcen2424_R0021	-	^{03 Pro tRNA}
757513	757859	+	347	116688024	Bcen2424_R0022	-	RNaseP RNA
900469	900545	-	77	116688024	Bcen2424_R0023	-	^{10 Lys tRNA}
1027329	1027403	-	75	116688024	Bcen2424_R0024	-	^{01 Gly tRNA}
1089752	1089842	+	91	116688024	Bcen2424_R0025	-	^{08 Ser tRNA}
1101897	1101984	-	88	116688024	Bcen2424_R0026	-	^{08 Ser tRNA}
1109308	1109384	-	77	116688024	Bcen2424_R0027	-	^{11 Arg tRNA}
1109446	1109522	-	77	116688024	Bcen2424_R0028	-	^{11 Arg tRNA}
1109589	1109665	-	77	116688024	Bcen2424_R0029	-	^{11 Arg tRNA}
1119429	1119504	-	76	116688024	Bcen2424_R0030	-	^{12 Thr tRNA}
1210435	1210510	-	76	116688024	Bcen2424_R0031	-	^{07 Asn tRNA}
1210583	1210658	-	76	116688024	Bcen2424_R0032	-	^{07 Asn tRNA}
1256651	1256726	+	76	116688024	Bcen2424_R0033	-	^{01 Gly tRNA}
1256780	1256855	+	76	116688024	Bcen2424_R0034	-	^{01 Gly tRNA}
1256907	1256982	+	76	116688024	Bcen2424_R0035	-	^{01 Gly tRNA}
1257082	1257155	+	74	116688024	Bcen2424_R0036	-	^{19 Cys tRNA}
1442747	1442823	-	77	116688024	Bcen2424_R0037	-	^{03 Pro tRNA}
1452122	1452198	+	77	116688024	Bcen2424_R0038	-	^{11 Arg tRNA}
1628443	1628519	+	77	116688024	Bcen2424_R0039	-	^{13 Val tRNA}
1640213	1640289	+	77	116688024	Bcen2424_R0040	-	^{03 Pro tRNA}
1709262	1709348	-	87	116688024	Bcen2424_R0041	-	^{15 Leu tRNA}
1709611	1709697	-	87	116688024	Bcen2424_R0042	-	^{15 Leu tRNA}
1710986	1711072	-	87	116688024	Bcen2424_R0043	-	^{15 Leu tRNA}
1723860	1723936	-	77	116688024	Bcen2424_R0044	-	^{16 Met tRNA}
1732090	1732165	+	76	116688024	Bcen2424_R0045	-	^{09 His tRNA}
2030869	2030971	-	103	116688024	Bcen2424_R0046	-	SRP RNA
2133954	2134030	-	77	116688024	Bcen2424_R0047	-	^{06 Asp tRNA}
2134054	2134129	-	76	116688024	Bcen2424_R0048	-	^{13 Val tRNA}
2149655	2149741	-	87	116688024	Bcen2424_R0049	-	^{15 Leu tRNA}
2280766	2280842	-	77	116688024	Bcen2424_R0050	-	^{06 Asp tRNA}
2280915	2280990	-	76	116688024	Bcen2424_R0051	-	^{04 Glu tRNA}
2281055	2281131	-	77	116688024	Bcen2424_R0052	-	^{06 Asp tRNA}
2281211	2281286	-	76	116688024	Bcen2424_R0053	-	^{04 Glu tRNA}
2281350	2281426	-	77	116688024	Bcen2424_R0054	-	^{06 Asp tRNA}
2281505	2281580	-	76	116688024	Bcen2424_R0055	-	^{04 Glu tRNA}
2281718	2281793	-	76	116688024	Bcen2424_R0056	-	^{02 Ala tRNA}
2303068	2303161	-	94	116688024	Bcen2424_R0057	-	^{08 Ser tRNA}
2383732	2383808	-	77	116688024	Bcen2424_R0058	-	^{16 Met tRNA}
2407982	2408056	+	75	116688024	Bcen2424_R0059	-	^{13 Val tRNA}
2437929	2438019	+	91	116688024	Bcen2424_R0060	-	^{08 Ser tRNA}
2468175	2468291	-	117	116688024	Bcen2424_R0061	-	5S ribosomal RNA
2468442	2471323	-	2882	116688024	Bcen2424_R0062	-	23S ribosomal RNA
2471613	2471688	-	76	116688024	Bcen2424_R0063	-	^{02 Ala tRNA}
2471727	2471803	-	77	116688024	Bcen2424_R0064	-	^{14 Ile tRNA}
2471865	2473400	-	1536	116688024	Bcen2424_R0065	-	16S ribosomal RNA
2504310	2504394	-	85	116688024	Bcen2424_R0066	-	^{15 Leu tRNA}
2629592	2629666	+	75	116688024	Bcen2424_R0067	-	^{11 Arg tRNA}
2648498	2648574	+	77	116688024	Bcen2424_R0068	-	^{16 Met tRNA}
2749735	2749819	+	85	116688024	Bcen2424_R0069	-	^{15 Leu tRNA}
2943658	2943734	+	77	116688024	Bcen2424_R0070	-	^{16 Met tRNA}
3098788	3098864	+	77	116688024	Bcen2424_R0071	-	^{05 Gln tRNA}
3434616	3434691	-	76	116688024	Bcen2424_R0072	-	^{17 Phe tRNA}
3452163	3452238	+	76	116688024	Bcen2424_R0073	-	^{10 Lys tRNA}