Геном прокариот/Материалы:NC 008554

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   LOCUS       NC_008554            4990251 bp    DNA     circular BCT 01-NOV-2006
   DEFINITION  Syntrophobacter fumaroxidans MPOB, complete genome.
   ACCESSION   NC_008554
   VERSION     NC_008554.1  GI:116747452
   KEYWORDS    .
   SOURCE      Syntrophobacter fumaroxidans MPOB
     ORGANISM  Syntrophobacter fumaroxidans MPOB
               Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales;
               Syntrophobacteraceae; Syntrophobacter.
   REFERENCE   1  (bases 1 to 4990251)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E.G.,
               Martinez,M., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Kim,E., Boone,D.R., Brockman,F., Culley,D., Ferry,J.,
               Gunsalus,R., McInerney,M.J., Morrison,M., Plugge,C., Rohlin,L.,
               Scholten,J., Sieber,J., Stams,A.J.M., Worm,P., Henstra,A.M. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Syntrophobacter fumaroxidans MPOB
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4990251)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (27-OCT-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4990251)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E.G.,
               Martinez,M., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Kim,E., Boone,D.R., Brockman,F., Culley,D., Ferry,J.,
               Gunsalus,R., McInerney,M.J., Morrison,M., Plugge,C., Rohlin,L.,
               Scholten,J., Sieber,J., Stams,A.J.M., Worm,P., Henstra,A.M. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (23-OCT-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000478.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3634477
               Source DNA and bacteria available from Michael J. McInerney
               (mcinerney@ou.edu)
               Contacts: Michael J. McInerney (mcinerney@ou.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-PGF
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
2632 2708 - 77 116747452 Sfum_R0001 - 16 Met tRNA
97015 97089 + 75 116747452 Sfum_R0002 - 19 Cys tRNA
117774 117850 - 77 116747452 Sfum_R0003 - 06 Asp tRNA
117864 117939 - 76 116747452 Sfum_R0004 - 13 Val tRNA
124502 124588 - 87 116747452 Sfum_R0005 - 15 Leu tRNA
253670 253745 + 76 116747452 Sfum_R0006 - 17 Phe tRNA
391640 391715 + 76 116747452 Sfum_R0007 - 02 Ala tRNA
513785 513859 + 75 116747452 Sfum_R0008 - 13 Val tRNA
643671 643745 - 75 116747452 Sfum_R0009 - 12 Thr tRNA
727351 727444 - 94 116747452 Sfum_R0010 - SRP RNA; RNA component of signal recognition particle
818767 818843 - 77 116747452 Sfum_R0011 - 20 Trp tRNA
832021 832096 + 76 116747452 Sfum_R0012 - 13 Val tRNA
847128 848682 + 1555 116747452 Sfum_R0013 - 16S ribosomal RNA
848741 848819 + 79 116747452 Sfum_R0014 - 14 Ile tRNA
848853 848928 + 76 116747452 Sfum_R0015 - 02 Ala tRNA
849287 852097 + 2811 116747452 Sfum_R0016 - 23S ribosomal RNA
852169 852285 + 117 116747452 Sfum_R0017 - 5S ribosomal RNA
995891 996019 - 129 116747452 Sfum_R0018 -
999525 999600 - 76 116747452 Sfum_R0019 - 09 His tRNA
1053856 1053930 + 75 116747452 Sfum_R0020 - 01 Gly tRNA
1085869 1085963 + 95 116747452 Sfum_R0021 - Sec tRNA
1206296 1206371 - 76 116747452 Sfum_R0022 - 04 Glu tRNA
1206381 1206454 - 74 116747452 Sfum_R0023 - 05 Gln tRNA
1274887 1274963 - 77 116747452 Sfum_R0024 - 11 Arg tRNA
1313294 1313370 + 77 116747452 Sfum_R0025 - 01 Gly tRNA
1375527 1375602 - 76 116747452 Sfum_R0026 - 02 Ala tRNA
1382201 1382273 - 73 116747452 Sfum_R0027 - 02 Ala tRNA
1382637 1382724 + 88 116747452 Sfum_R0028 - 15 Leu tRNA
1497358 1497430 - 73 116747452 Sfum_R0029 - 16 Met tRNA
1518030 1518105 + 76 116747452 Sfum_R0030 - 01 Gly tRNA
1551485 1551561 - 77 116747452 Sfum_R0031 - 03 Pro tRNA
1782059 1782130 + 72 116747452 Sfum_R0032 - 12 Thr tRNA
1900534 1900618 + 85 116747452 Sfum_R0033 - 18 Tyr tRNA
1900784 1900860 + 77 116747452 Sfum_R0034 - 12 Thr tRNA
1971357 1971433 + 77 116747452 Sfum_R0035 - 11 Arg tRNA
1971453 1971527 + 75 116747452 Sfum_R0036 - 10 Lys tRNA
2009580 2009902 - 323 116747452 Sfum_R0037 - RNA component of RNaseP
2034257 2034436 - 180 116747452 Sfum_R0038 -
2207674 2207806 - 133 116747452 Sfum_R0039 -
2361379 2361456 + 78 116747452 Sfum_R0040 - 03 Pro tRNA
2516710 2516795 - 86 116747452 Sfum_R0041 - 15 Leu tRNA
2956592 2956762 + 171 116747452 Sfum_R0042 -
2990428 2990515 + 88 116747452 Sfum_R0043 - 15 Leu tRNA
3000428 3000511 + 84 116747452 Sfum_R0044 - Xaa tRNA
3121848 3121940 + 93 116747452 Sfum_R0045 - 08 Ser tRNA
3121958 3122051 + 94 116747452 Sfum_R0046 - 08 Ser tRNA
3183599 3183715 - 117 116747452 Sfum_R0047 - 5S ribosomal RNA
3183787 3186597 - 2811 116747452 Sfum_R0048 - 23S ribosomal RNA
3186956 3187031 - 76 116747452 Sfum_R0049 - 02 Ala tRNA
3187065 3187143 - 79 116747452 Sfum_R0050 - 14 Ile tRNA
3187202 3188756 - 1555 116747452 Sfum_R0051 - 16S ribosomal RNA
3438094 3438189 + 96 116747452 Sfum_R0052 - 08 Ser tRNA
3438305 3438397 + 93 116747452 Sfum_R0053 - 08 Ser tRNA
3445275 3445350 + 76 116747452 Sfum_R0054 - 07 Asn tRNA
3516657 3516732 + 76 116747452 Sfum_R0055 - 11 Arg tRNA
3638674 3638748 - 75 116747452 Sfum_R0056 - 03 Pro tRNA
3903641 3903727 - 87 116747452 Sfum_R0057 - 15 Leu tRNA
4205868 4205945 - 78 116747452 Sfum_R0058 - 04 Glu tRNA
4205999 4206074 - 76 116747452 Sfum_R0059 - 10 Lys tRNA
4437177 4437253 - 77 116747452 Sfum_R0060 - 11 Arg tRNA
4459662 4459736 + 75 116747452 Sfum_R0061 - 05 Gln tRNA
4570821 4570897 - 77 116747452 Sfum_R0062 - 11 Arg tRNA
4622994 4623344 + 351 116747452 Sfum_R0063 - tmRNA
4857774 4857850 - 77 116747452 Sfum_R0064 - 16 Met tRNA