Геном прокариот/Материалы:NC 008752

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008752            5352772 bp    DNA     circular BCT 05-JAN-2007
   DEFINITION  Acidovorax avenae subsp. citrulli AAC00-1, complete genome.
   ACCESSION   NC_008752
   VERSION     NC_008752.1  GI:120608714
   KEYWORDS    .
   SOURCE      Acidovorax avenae subsp. citrulli AAC00-1
     ORGANISM  Acidovorax avenae subsp. citrulli AAC00-1
               Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
               Comamonadaceae; Acidovorax.
   REFERENCE   1  (bases 1 to 5352772)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T.,
               Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Kim,E., Stahl,D. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Acidovorax avenae subsp. citrulli AAC00-1
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5352772)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (04-JAN-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5352772)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T.,
               Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Kim,E., Stahl,D. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (13-DEC-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000512.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4001427
               Source DNA and bacteria available from David Stahl
               (dastahl@u.washington.edu)
               Contacts: David Stahl (dastahl@u.washington.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
421004	421079	+	76	120608714	Aave_R0001	-	^{11 Arg tRNA}
678492	678568	+	77	120608714	Aave_R0002	-	^{16 Met tRNA}
850157	850431	+	275	120608714	Aave_R0003	-	RNase P
953378	953454	+	77	120608714	Aave_R0004	-	^{16 Met tRNA}
1387775	1387859	+	85	120608714	Aave_R0005	-	^{15 Leu tRNA}
1577962	1579483	+	1522	120608714	Aave_R0006	-	16S ribosomal RNA
1579555	1579631	+	77	120608714	Aave_R0007	-	^{14 Ile tRNA}
1579663	1579738	+	76	120608714	Aave_R0008	-	^{02 Ala tRNA}
1580100	1582980	+	2881	120608714	Aave_R0009	-	23S ribosomal RNA
1583093	1583205	+	113	120608714	Aave_R0010	-	5S ribosomal RNA
1604244	1604319	-	76	120608714	Aave_R0011	-	^{01 Gly tRNA}
1604432	1604505	-	74	120608714	Aave_R0012	-	^{19 Cys tRNA}
1604561	1604636	-	76	120608714	Aave_R0013	-	^{01 Gly tRNA}
1610765	1610851	-	87	120608714	Aave_R0014	-	^{15 Leu tRNA}
1643270	1643361	+	92	120608714	Aave_R0015	-	^{15 Leu tRNA}
1756051	1756127	+	77	120608714	Aave_R0016	-	^{13 Val tRNA}
1828502	1828577	+	76	120608714	Aave_R0017	-	^{13 Val tRNA}
1897374	1897449	+	76	120608714	Aave_R0018	-	^{09 His tRNA}
1920321	1920397	+	77	120608714	Aave_R0019	-	^{16 Met tRNA}
1945301	1945377	-	77	120608714	Aave_R0020	-	^{11 Arg tRNA}
1997788	1997863	-	76	120608714	Aave_R0021	-	^{12 Thr tRNA}
2021784	2021859	+	76	120608714	Aave_R0022	-	^{02 Ala tRNA}
2021892	2021967	+	76	120608714	Aave_R0023	-	^{04 Glu tRNA}
2022020	2022096	+	77	120608714	Aave_R0024	-	^{06 Asp tRNA}
2022170	2022245	+	76	120608714	Aave_R0025	-	^{02 Ala tRNA}
2022279	2022354	+	76	120608714	Aave_R0026	-	^{04 Glu tRNA}
2022406	2022482	+	77	120608714	Aave_R0027	-	^{06 Asp tRNA}
2068771	2068846	-	76	120608714	Aave_R0028	-	^{10 Lys tRNA}
2156283	2156367	-	85	120608714	Aave_R0029	-	^{15 Leu tRNA}
2554319	2554411	+	93	120608714	Aave_R0030	-	^{08 Ser tRNA}
2673714	2673788	+	75	120608714	Aave_R0031	-	^{13 Val tRNA}
2673833	2673907	+	75	120608714	Aave_R0032	-	^{13 Val tRNA}
2770121	2770194	-	74	120608714	Aave_R0033	-	^{01 Gly tRNA}
2904776	2904876	-	101	120608714	Aave_R0034	-	SRP RNA; RNA component of signal recognition particle
3143442	3143518	-	77	120608714	Aave_R0035	-	^{03 Pro tRNA}
3243131	3243207	-	77	120608714	Aave_R0036	-	^{03 Pro tRNA}
3289237	3289321	+	85	120608714	Aave_R0037	-	^{15 Leu tRNA}
3289523	3289607	+	85	120608714	Aave_R0038	-	^{15 Leu tRNA}
3427982	3428057	+	76	120608714	Aave_R0039	-	^{07 Asn tRNA}
3428117	3428192	+	76	120608714	Aave_R0040	-	^{07 Asn tRNA}
3604592	3604681	+	90	120608714	Aave_R0041	-	^{08 Ser tRNA}
3621588	3621963	-	376	120608714	Aave_R0042	-
3759486	3759561	-	76	120608714	Aave_R0043	-	^{10 Lys tRNA}
3907100	3907187	+	88	120608714	Aave_R0044	-	^{08 Ser tRNA}
3958339	3958415	-	77	120608714	Aave_R0045	-	^{11 Arg tRNA}
3983496	3983572	+	77	120608714	Aave_R0046	-	^{05 Gln tRNA}
4053448	4053524	+	77	120608714	Aave_R0047	-	^{03 Pro tRNA}
4069768	4069843	-	76	120608714	Aave_R0048	-	^{12 Thr tRNA}
4186414	4186503	-	90	120608714	Aave_R0049	-	^{08 Ser tRNA}
4387507	4387581	+	75	120608714	Aave_R0050	-	^{11 Arg tRNA}
4859361	4859473	-	113	120608714	Aave_R0051	-	5S ribosomal RNA
4859586	4862466	-	2881	120608714	Aave_R0052	-	23S ribosomal RNA
4862828	4862903	-	76	120608714	Aave_R0053	-	^{02 Ala tRNA}
4862935	4863011	-	77	120608714	Aave_R0054	-	^{14 Ile tRNA}
4863083	4864604	-	1522	120608714	Aave_R0055	-	16S ribosomal RNA
5027995	5028070	-	76	120608714	Aave_R0056	-	^{17 Phe tRNA}
5046274	5046349	-	76	120608714	Aave_R0057	-	^{20 Trp tRNA}
5047623	5047697	-	75	120608714	Aave_R0058	-	^{12 Thr tRNA}
5047733	5047806	-	74	120608714	Aave_R0059	-	^{01 Gly tRNA}
5047849	5047934	-	86	120608714	Aave_R0060	-	^{18 Tyr tRNA}
5048074	5048186	-	113	120608714	Aave_R0061	-	5S ribosomal RNA
5048299	5051179	-	2881	120608714	Aave_R0062	-	23S ribosomal RNA
5051541	5051616	-	76	120608714	Aave_R0063	-	^{02 Ala tRNA}
5051648	5051724	-	77	120608714	Aave_R0064	-	^{14 Ile tRNA}
5051796	5053317	-	1522	120608714	Aave_R0065	-	16S ribosomal RNA