Геном прокариот/Материалы:NC 008789

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008789            2678452 bp    DNA     circular BCT 13-JAN-2007
   DEFINITION  Halorhodospira halophila SL1, complete genome.
   ACCESSION   NC_008789
   VERSION     NC_008789.1  GI:121996810
   KEYWORDS    .
   SOURCE      Halorhodospira halophila SL1
     ORGANISM  Halorhodospira halophila SL1
               Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales;
               Ectothiorhodospiraceae; Halorhodospira.
   REFERENCE   1  (bases 1 to 2678452)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Saunders,E., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J.,
               Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Hoff,W.
               and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Halorhodospira halophila SL1
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 2678452)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (12-JAN-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2678452)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Saunders,E., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J.,
               Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Hoff,W.
               and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (22-DEC-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000544.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000187
               Source DNA and bacteria available from Wouter Hoff
               (whoff@midway.uchicago.edu)
               Contacts: Wouter Hoff (whoff@midway.uchicago.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
22358	22431	+	74	121996810	Hhal_R0001	-	^{19 Cys tRNA}
22494	22578	+	85	121996810	Hhal_R0002	-	^{15 Leu tRNA}
119800	119876	-	77	121996810	Hhal_R0003	-	^{04 Glu tRNA}
234447	234536	-	90	121996810	Hhal_R0004	-	^{08 Ser tRNA}
267061	267178	-	118	121996810	Hhal_R0005	-	SRP RNA
267185	267272	-	88	121996810	Hhal_R0006	-	^{08 Ser tRNA}
376737	376853	-	117	121996810	Hhal_R0007	-	5S ribosomal RNA
376939	379842	-	2904	121996810	Hhal_R0008	-	23S ribosomal RNA
380025	381562	-	1538	121996810	Hhal_R0009	-	16S ribosomal RNA
494451	494527	+	77	121996810	Hhal_R0010	-	^{13 Val tRNA}
501892	501968	+	77	121996810	Hhal_R0011	-	^{03 Pro tRNA}
614224	614298	+	75	121996810	Hhal_R0012	-	^{07 Asn tRNA}
677797	677873	-	77	121996810	Hhal_R0013	-	^{06 Asp tRNA}
677921	677996	-	76	121996810	Hhal_R0014	-	^{13 Val tRNA}
684545	684634	-	90	121996810	Hhal_R0015	-	^{15 Leu tRNA}
689998	690074	+	77	121996810	Hhal_R0016	-	^{03 Pro tRNA}
690116	690192	+	77	121996810	Hhal_R0017	-	^{11 Arg tRNA}
690228	690303	+	76	121996810	Hhal_R0018	-	^{09 His tRNA}
690405	690480	+	76	121996810	Hhal_R0019	-	^{10 Lys tRNA}
742426	742512	+	87	121996810	Hhal_R0020	-	^{15 Leu tRNA}
760849	760923	+	75	121996810	Hhal_R0021	-	^{04 Glu tRNA}
816303	816378	+	76	121996810	Hhal_R0022	-	^{02 Ala tRNA}
824039	824115	-	77	121996810	Hhal_R0023	-	^{11 Arg tRNA}
944492	944567	-	76	121996810	Hhal_R0024	-	^{20 Trp tRNA}
945881	945956	-	76	121996810	Hhal_R0025	-	^{12 Thr tRNA}
945995	946068	-	74	121996810	Hhal_R0026	-	^{01 Gly tRNA}
946130	946214	-	85	121996810	Hhal_R0027	-	^{18 Tyr tRNA}
946263	946338	-	76	121996810	Hhal_R0028	-	^{12 Thr tRNA}
948747	948863	-	117	121996810	Hhal_R0029	-	5S ribosomal RNA
948948	951851	-	2904	121996810	Hhal_R0030	-	23S ribosomal RNA
952021	952096	-	76	121996810	Hhal_R0031	-	^{02 Ala tRNA}
952108	952184	-	77	121996810	Hhal_R0032	-	^{14 Ile tRNA}
952248	953785	-	1538	121996810	Hhal_R0033	-	16S ribosomal RNA
1058093	1058169	-	77	121996810	Hhal_R0034	-	^{16 Met tRNA}
1062168	1062242	-	75	121996810	Hhal_R0035	-	^{05 Gln tRNA}
1194816	1194891	+	76	121996810	Hhal_R0036	-	^{16 Met tRNA}
1237862	1237938	-	77	121996810	Hhal_R0037	-	^{11 Arg tRNA}
1242463	1242538	+	76	121996810	Hhal_R0038	-	^{17 Phe tRNA}
1386854	1386929	-	76	121996810	Hhal_R0039	-	^{02 Ala tRNA}
1388532	1388606	+	75	121996810	Hhal_R0040	-	^{13 Val tRNA}
1605457	1605810	+	354	121996810	Hhal_R0042	-	tmRNA
1721851	1721927	-	77	121996810	Hhal_R0043	-	^{16 Met tRNA}
1803569	1803645	-	77	121996810	Hhal_R0044	-	^{11 Arg tRNA}
1803697	1803786	-	90	121996810	Hhal_R0045	-	^{08 Ser tRNA}
1877309	1877394	+	86	121996810	Hhal_R0046	-	^{15 Leu tRNA}
1924613	1924689	-	77	121996810	Hhal_R0047	-	^{16 Met tRNA}
1939575	1939659	-	85	121996810	Hhal_R0048	-	^{15 Leu tRNA}
1998217	1998292	+	76	121996810	Hhal_R0049	-	^{12 Thr tRNA}
2020663	2020739	-	77	121996810	Hhal_R0050	-	^{03 Pro tRNA}
2046979	2047067	+	89	121996810	Hhal_R0051	-	^{08 Ser tRNA}
2280907	2280980	-	74	121996810	Hhal_R0052	-	^{05 Gln tRNA}
2306516	2306817	+	302	121996810	Hhal_R0053	-	RnaseP RNA
2348651	2348725	-	75	121996810	Hhal_R0054	-	^{01 Gly tRNA}
2433936	2434008	+	73	121996810	Hhal_R0055	-	^{10 Lys tRNA}
2637699	2637772	+	74	121996810	Hhal_R0057	-	^{01 Gly tRNA}