Геном прокариот/Материалы:NC 009337

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009337            1966858 bp    DNA     circular BCT 14-AUG-2007
   DEFINITION  Prosthecochloris vibrioformis DSM 265, complete genome.
   ACCESSION   NC_009337
   VERSION     NC_009337.1  GI:145218822
   KEYWORDS    .
   SOURCE      Prosthecochloris vibrioformis DSM 265
     ORGANISM  Prosthecochloris vibrioformis DSM 265
               Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae;
               Chlorobium/Pelodictyon group; Chlorobium.
   REFERENCE   1  (bases 1 to 1966858)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Schmutz,J.,
               Larimer,F., Land,M., Hauser,L., Mikhailova,N., Li,T., Overmann,J.,
               Schuster,S.C., Bryant,D.A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Prosthecochloris vibrioformis DSM 265
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 1966858)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (13-APR-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 1966858)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Pitluck,S., Schmutz,J.,
               Larimer,F., Land,M., Hauser,L., Mikhailova,N., Li,T., Overmann,J.,
               Schuster,S.C., Bryant,D.A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (05-MAR-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000607.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3634473
               Source DNA and bacteria available from Donald A. Bryant
               (dab14@psu.edu)
               Contacts: Donald A. Bryant (dab14@psu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by Donald A. Bryant
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376)
               Additional Notes: By phylogeny it does not cluster with the type
               species of Prosthecochloris (P. aestuarii DSM 271) and it's closest
               relative is Chlorobium phaeovibrioides DSM 269. Also see the
               Comments and References of the NCBI Taxomy Browser for
               Prosthecochloris vibrioformis DSM 265.
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
30724	30799	-	76	145218822	Cvib_R0001	-	^{12 Thr tRNA}
155961	156037	+	77	145218822	Cvib_R0002	-	^{13 Val tRNA}
191773	193279	+	1507	145218822	Cvib_R0003	-	16S ribosomal RNA
193441	193517	+	77	145218822	Cvib_R0004	-	^{14 Ile tRNA}
193562	193637	+	76	145218822	Cvib_R0005	-	^{02 Ala tRNA}
193777	196682	+	2906	145218822	Cvib_R0006	-	23S ribosomal RNA
196798	196917	+	120	145218822	Cvib_R0007	-	5S ribosomal RNA
221833	221907	-	75	145218822	Cvib_R0008	-	^{07 Asn tRNA}
265126	265198	+	73	145218822	Cvib_R0009	-	^{01 Gly tRNA}
411414	411488	-	75	145218822	Cvib_R0010	-	^{06 Asp tRNA}
558852	558924	-	73	145218822	Cvib_R0011	-	^{02 Ala tRNA}
653522	653595	+	74	145218822	Cvib_R0012	-	^{13 Val tRNA}
671222	671308	-	87	145218822	Cvib_R0013	-	^{08 Ser tRNA}
672620	672695	-	76	145218822	Cvib_R0014	-	^{01 Gly tRNA}
801554	801901	-	348	145218822	Cvib_R0015	-	RNaseP RNA
802967	803048	-	82	145218822	Cvib_R0016	-	^{15 Leu tRNA}
840408	840484	-	77	145218822	Cvib_R0017	-	^{13 Val tRNA}
869339	869414	+	76	145218822	Cvib_R0018	-	^{16 Met tRNA}
1045309	1045382	+	74	145218822	Cvib_R0019	-	^{19 Cys tRNA}
1162288	1162363	-	76	145218822	Cvib_R0020	-	^{03 Pro tRNA}
1162376	1162448	-	73	145218822	Cvib_R0021	-	^{11 Arg tRNA}
1182416	1182492	+	77	145218822	Cvib_R0022	-	^{16 Met tRNA}
1182496	1182571	+	76	145218822	Cvib_R0023	-	^{01 Gly tRNA}
1189890	1189979	-	90	145218822	Cvib_R0024	-	^{08 Ser tRNA}
1189991	1190073	-	83	145218822	Cvib_R0025	-	^{08 Ser tRNA}
1190335	1190424	-	90	145218822	Cvib_R0026	-	^{08 Ser tRNA}
1238940	1239021	+	82	145218822	Cvib_R0027	-	^{15 Leu tRNA}
1239038	1239124	+	87	145218822	Cvib_R0028	-	^{15 Leu tRNA}
1250474	1250549	-	76	145218822	Cvib_R0029	-	^{10 Lys tRNA}
1256678	1256749	-	72	145218822	Cvib_R0030	-	^{04 Glu tRNA}
1256758	1256833	-	76	145218822	Cvib_R0031	-	^{09 His tRNA}
1256864	1256939	-	76	145218822	Cvib_R0032	-	^{11 Arg tRNA}
1256964	1257036	-	73	145218822	Cvib_R0033	-	^{03 Pro tRNA}
1267599	1267673	+	75	145218822	Cvib_R0034	-	^{05 Gln tRNA}
1286491	1286889	-	399	145218822	Cvib_R0035	-	tmRNA
1365260	1365333	+	74	145218822	Cvib_R0036	-	^{16 Met tRNA}
1365370	1365443	+	74	145218822	Cvib_R0037	-	^{04 Glu tRNA}
1365491	1365567	+	77	145218822	Cvib_R0038	-	^{11 Arg tRNA}
1365578	1365649	+	72	145218822	Cvib_R0039	-	^{05 Gln tRNA}
1674295	1674367	-	73	145218822	Cvib_R0040	-	^{17 Phe tRNA}
1709556	1709637	-	82	145218822	Cvib_R0041	-	^{15 Leu tRNA}
1709674	1709746	-	73	145218822	Cvib_R0042	-	^{10 Lys tRNA}
1753991	1754079	+	89	145218822	Cvib_R0043	-	^{15 Leu tRNA}
1762444	1762517	-	74	145218822	Cvib_R0044	-	^{03 Pro tRNA}
1795284	1795356	-	73	145218822	Cvib_R0045	-	^{20 Trp tRNA}
1795385	1795457	-	73	145218822	Cvib_R0046	-	^{12 Thr tRNA}
1795482	1795564	-	83	145218822	Cvib_R0047	-	^{18 Tyr tRNA}
1795578	1795650	-	73	145218822	Cvib_R0048	-	^{12 Thr tRNA}
1809396	1809471	-	76	145218822	Cvib_R0049	-	^{11 Arg tRNA}
1923540	1923643	-	104	145218822	Cvib_R0050	-	SRP RNA; RNA component of signal recognition particle
1933562	1933637	-	76	145218822	Cvib_R0051	-	^{02 Ala tRNA}