Геном прокариот/Материалы:NC 009848

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009848            3704465 bp    DNA     circular BCT 28-SEP-2007
   DEFINITION  Bacillus pumilus SAFR-032, complete genome.
   ACCESSION   NC_009848
   VERSION     NC_009848.1  GI:157690798
   KEYWORDS    .
   SOURCE      Bacillus pumilus SAFR-032
     ORGANISM  Bacillus pumilus SAFR-032
               Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus.
   REFERENCE   1  (bases 1 to 3704465)
     AUTHORS   Gioia,J., Yerrapragada,S., Qin,X., Jiang,H., Igboeli,O.C.,
               Muzny,D., Dugan-Rocha,S., Ding,Y., Hawes,A., Liu,W., Perez,L.,
               Kovar,C., Dinh,H., Lee,S., Nazareth,L., Blyth,P., Holder,M.,
               Buhay,C., Tirumalai,M.R., Liu,Y., Dasgupta,I., Bokhetache,L.,
               Fujita,M., Karouia,F., Eswara Moorthy,P., Siefert,J., Uzman,A.,
               Buzumbo,P., Verma,A., Zwiya,H., McWilliams,B.D., Olowu,A.,
               Clinkenbeard,K.D., Newcombe,D., Golebiewski,L., Petrosino,J.F.,
               Nicholson,W.L., Fox,G.E., Venkateswaran,K., Highlander,S.K. and
               Weinstock,G.M.
     TITLE     Paradoxical DNA Repair and Peroxide Resistance Gene Conservation in
               Bacillus pumilus SAFR-032
     JOURNAL   (er) PLoS ONE 2 (9), E928 (2007)
      PUBMED   17895969
   REFERENCE   2  (bases 1 to 3704465)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (27-SEP-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3704465)
     AUTHORS   Gioia,J., Yerrapragada,S., Qin,X., Jiang,H., Igboeli,O.C.,
               Muzny,D., Dugan-Rocha,S., Ding,Y., Hawes,A., Liu,W., Perez,L.,
               Kovar,C., Dinh,H., Lee,S., Nazareth,L., Blyth,P., Holder,M.,
               Buhay,C., Tirumalai,M.R., Liu,Y., Dasgupta,I., Bokhetache,L.,
               Fujita,M., Karouia,F., Moorthy,P.E., Siefert,J., Uzman,A.,
               Buzumbo,P., Verma,A., Zwiya,H., McWilliams,B.D., Olowu,A.,
               Clinkenbeard,K.D., Newcombe,D., Golebiewski,L., Petrosino,J.F.,
               Nicholson,W.L., Fox,G.E., Venkateswaran,K., Highlander,S.K. and
               Weinstock,G.M.
     TITLE     Direct Submission
     JOURNAL   Submitted (15-AUG-2007) Human Genome Sequencing Center, Baylor
               College of Medicine, One Baylor Plaza, Houston, TX 77030, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000813.
               Source DNA and bacteria are avaible from S.K. Highlander
               (sarahh@bcm.tmc.ed).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
9570	11120	+	1551	157690798	BPUM_r0001	-	16S ribosomal RNA
11300	14230	+	2931	157690798	BPUM_r0002	-	23S ribosomal RNA
14292	14410	+	119	157690798	BPUM_r0003	-	5S ribosomal RNA
49313	49386	+	74	157690798	BPUM_t0001	-	^{16 Met tRNA}
49413	49484	+	72	157690798	BPUM_t0002	-	^{04 Glu tRNA}
71178	72730	+	1553	157690798	BPUM_r0004	-	16S ribosomal RNA
72910	75840	+	2931	157690798	BPUM_r0005	-	23S ribosomal RNA
75902	76020	+	119	157690798	BPUM_r0006	-	5S ribosomal RNA
138304	139854	+	1551	157690798	BPUM_r0007	-	16S ribosomal RNA
140034	142967	+	2934	157690798	BPUM_r0008	-	23S ribosomal RNA
143029	143147	+	119	157690798	BPUM_r0009	-	5S ribosomal RNA
143187	143261	+	75	157690798	BPUM_t0003	-	^{07 Asn tRNA}
156050	156124	+	75	157690798	BPUM_t0004	-	^{04 Glu tRNA}
156132	156207	+	76	157690798	BPUM_t0005	-	^{13 Val tRNA}
156211	156283	+	73	157690798	BPUM_t0006	-	^{12 Thr tRNA}
156311	156395	+	85	157690798	BPUM_t0007	-	^{18 Tyr tRNA}
156400	156471	+	72	157690798	BPUM_t0008	-	^{05 Gln tRNA}
497357	497431	+	75	157690798	BPUM_t0009	-	^{07 Asn tRNA}
497436	497526	+	91	157690798	BPUM_t0010	-	^{08 Ser tRNA}
497536	497607	+	72	157690798	BPUM_t0011	-	^{04 Glu tRNA}
497630	497704	+	75	157690798	BPUM_t0012	-	^{05 Gln tRNA}
497735	497810	+	76	157690798	BPUM_t0013	-	^{10 Lys tRNA}
497818	497900	+	83	157690798	BPUM_t0014	-	^{15 Leu tRNA}
497949	498032	+	84	157690798	BPUM_t0015	-	^{15 Leu tRNA}
531669	531745	+	77	157690798	BPUM_t0016	-	^{11 Arg tRNA}
531757	531830	+	74	157690798	BPUM_t0017	-	^{01 Gly tRNA}
532013	533563	+	1551	157690798	BPUM_r0010	-	16S ribosomal RNA
533656	533732	+	77	157690798	BPUM_t0018	-	^{14 Ile tRNA}
533747	533822	+	76	157690798	BPUM_t0019	-	^{02 Ala tRNA}
533921	536851	+	2931	157690798	BPUM_r0011	-	23S ribosomal RNA
536913	537031	+	119	157690798	BPUM_r0012	-	5S ribosomal RNA
546998	547090	+	93	157690798	BPUM_t0020	-	^{08 Ser tRNA}
551054	551345	+	292	157690798	BPUM_nc0005	-	signal recognition particle-like (SRP) RNA component
555236	556786	+	1551	157690798	BPUM_r0013	-	16S ribosomal RNA
556966	559896	+	2931	157690798	BPUM_r0014	-	23S ribosomal RNA
559958	560076	+	119	157690798	BPUM_r0015	-	5S ribosomal RNA
560096	560172	+	77	157690798	BPUM_t0021	-	^{16 Met tRNA}
560177	560253	+	77	157690798	BPUM_t0022	-	^{06 Asp tRNA}
905382	906932	+	1551	157690798	BPUM_r0016	-	16S ribosomal RNA
907112	910041	+	2930	157690798	BPUM_r0017	-	23S ribosomal RNA
910153	910266	+	114	157690798	BPUM_r0018	-	5S ribosomal RNA
910276	910350	+	75	157690798	BPUM_t0023	-	^{07 Asn tRNA}
910355	910445	+	91	157690798	BPUM_t0024	-	^{08 Ser tRNA}
910463	910537	+	75	157690798	BPUM_t0025	-	^{04 Glu tRNA}
910570	910645	+	76	157690798	BPUM_t0026	-	^{13 Val tRNA}
910661	910737	+	77	157690798	BPUM_t0027	-	^{16 Met tRNA}
910760	910836	+	77	157690798	BPUM_t0028	-	^{06 Asp tRNA}
910855	910930	+	76	157690798	BPUM_t0029	-	^{17 Phe tRNA}
910937	911009	+	73	157690798	BPUM_t0030	-	^{12 Thr tRNA}
911025	911109	+	85	157690798	BPUM_t0031	-	^{18 Tyr tRNA}
911119	911192	+	74	157690798	BPUM_t0032	-	^{20 Trp tRNA}
911223	911298	+	76	157690798	BPUM_t0033	-	^{09 His tRNA}
911308	911379	+	72	157690798	BPUM_t0034	-	^{05 Gln tRNA}
911387	911461	+	75	157690798	BPUM_t0035	-	^{01 Gly tRNA}
911467	911537	+	71	157690798	BPUM_t0036	-	^{19 Cys tRNA}
911551	911639	+	89	157690798	BPUM_t0037	-	^{15 Leu tRNA}
911676	911757	+	82	157690798	BPUM_t0038	-	^{15 Leu tRNA}
926856	926929	-	74	157690798	BPUM_t0039	-	^{01 Gly tRNA}
1199742	1199814	+	73	157690798	BPUM_t0040	-	^{13 Val tRNA}
1916255	1916403	-	149	157690798	BPUM_nc0014	-	6S RNA
2003502	2003851	-	350	157690798	BPUM_nc0016	-	RNA component of RNase P
2227593	2227666	+	74	157690798	BPUM_t0041	-	^{05 Gln tRNA}
2499387	2499460	-	74	157690798	BPUM_t0042	-	^{11 Arg tRNA}
2730967	2731038	-	72	157690798	BPUM_t0043	-	^{04 Glu tRNA}
2731046	2731136	-	91	157690798	BPUM_t0044	-	^{08 Ser tRNA}
2731140	2731214	-	75	157690798	BPUM_t0045	-	^{07 Asn tRNA}
2731221	2731297	-	77	157690798	BPUM_t0046	-	^{14 Ile tRNA}
2731315	2731388	-	74	157690798	BPUM_t0047	-	^{01 Gly tRNA}
2731398	2731473	-	76	157690798	BPUM_t0048	-	^{09 His tRNA}
2731501	2731573	-	73	157690798	BPUM_t0049	-	^{17 Phe tRNA}
2731592	2731668	-	77	157690798	BPUM_t0050	-	^{06 Asp tRNA}
2731691	2731768	-	78	157690798	BPUM_t0051	-	^{16 Met tRNA}
2731798	2731890	-	93	157690798	BPUM_t0052	-	^{08 Ser tRNA}
2731898	2731974	-	77	157690798	BPUM_t0053	-	^{16 Met tRNA}
2731979	2732052	-	74	157690798	BPUM_t0054	-	^{16 Met tRNA}
2732077	2732149	-	73	157690798	BPUM_t0055	-	^{02 Ala tRNA}
2732158	2732234	-	77	157690798	BPUM_t0056	-	^{03 Pro tRNA}
2732242	2732318	-	77	157690798	BPUM_t0057	-	^{11 Arg tRNA}
2732329	2732414	-	86	157690798	BPUM_t0058	-	^{15 Leu tRNA}
2732427	2732498	-	72	157690798	BPUM_t0059	-	^{01 Gly tRNA}
2732529	2732611	-	83	157690798	BPUM_t0060	-	^{15 Leu tRNA}
2732620	2732695	-	76	157690798	BPUM_t0061	-	^{10 Lys tRNA}
2732733	2732808	-	76	157690798	BPUM_t0062	-	^{12 Thr tRNA}
2732842	2732917	-	76	157690798	BPUM_t0063	-	^{13 Val tRNA}
2733406	2733524	-	119	157690798	BPUM_r0019	-	5S ribosomal RNA
2733586	2736516	-	2931	157690798	BPUM_r0020	-	23S ribosomal RNA
2736696	2738247	-	1552	157690798	BPUM_r0021	-	16S ribosomal RNA
2749752	2749824	+	73	157690798	BPUM_t0064	-	^{02 Ala tRNA}
3081404	3081479	-	76	157690798	BPUM_t0065	-	^{11 Arg tRNA}
3657378	3657450	-	73	157690798	BPUM_t0066	-	^{17 Phe tRNA}
3657478	3657554	-	77	157690798	BPUM_t0067	-	^{06 Asp tRNA}
3657636	3657707	-	72	157690798	BPUM_t0068	-	^{04 Glu tRNA}
3657714	3657789	-	76	157690798	BPUM_t0069	-	^{10 Lys tRNA}