Материалы:NC 009648

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009648            5315120 bp    DNA     circular BCT 25-JUL-2007
   DEFINITION  Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome.
   ACCESSION   NC_009648
   VERSION     NC_009648.1  GI:152968582
   KEYWORDS    .
   SOURCE      Klebsiella pneumoniae subsp. pneumoniae MGH 78578
     ORGANISM  Klebsiella pneumoniae subsp. pneumoniae MGH 78578
               Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
               Enterobacteriaceae; Klebsiella.
   REFERENCE   1  (bases 1 to 5315120)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (09-JUL-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   2  (bases 1 to 5315120)
     AUTHORS   McClelland,M., Sanderson,E.K., Spieth,J., Clifton,W.S.,
               Latreille,P., Sabo,A., Pepin,K., Bhonagiri,V., Porwollik,S., Ali,J.
               and Wilson,R.K.
     CONSRTM   The Klebsiella pneumonia Genome Sequencing Project
     TITLE     Direct Submission
     JOURNAL   Submitted (06-SEP-2006) Genetics, Genome Sequencing Center, 4444
               Forest Park Parkway, St. Louis, MO 63108, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000647.
               Coding sequences below are predicted from manually evaluated
               computer analysis, using similarity information and the program
               GeneMark (version 2.3); tRNA genes were determined using
               tRNAscan-SE-1.23; This sequence was finished as follows unless
               otherwise noted: all regions were double stranded, sequenced  with
               an alternate chemistries or covered by high quality data (i.e.,
               phred quality >=30); an attempt was made to resolve all sequencing
               problems, such as compressions and repeats; all regions were
               covered by sequence from more than one m13 subclone.
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
249501	251044	+	1544	152968582	KPN_00215	-	16s ribosomal RNA (rrsH)
251109	251185	+	77	152968582	KPN_00216	-	^{14 Ile tRNA}
251222	251297	+	76	152968582	KPN_00217	-	^{02 Ala tRNA}
251475	254378	+	2904	152968582	KPN_00218	-	23S ribosomal RNA (rrlH)
254476	254598	+	123	152968582	KPN_00219	-	5S ribosomal RNA (rrfH)
254651	254727	+	77	152968582	KPN_00220	-	^{06 Asp tRNA}
264104	264180	+	77	152968582	KPN_00231	-	^{06 Asp tRNA}
317131	317206	-	76	152968582	KPN_00279	-	^{12 Thr tRNA}
531839	531915	+	77	152968582	KPN_00486	-	^{11 Arg tRNA}
778650	778724	-	75	152968582	KPN_00688	-	^{05 Gln tRNA}
778800	778874	-	75	152968582	KPN_00689	-	^{05 Gln tRNA}
778922	778998	-	77	152968582	KPN_00690	-	^{16 Met tRNA}
779022	779096	-	75	152968582	KPN_00691	-	^{05 Gln tRNA}
779133	779207	-	75	152968582	KPN_00692	-	^{05 Gln tRNA}
779231	779315	-	85	152968582	KPN_00693	-	^{15 Leu tRNA}
779324	779400	-	77	152968582	KPN_00694	-	^{16 Met tRNA}
838007	838082	+	76	152968582	KPN_00747	-	^{10 Lys tRNA}
838208	838283	+	76	152968582	KPN_00748	-	^{13 Val tRNA}
838286	838361	+	76	152968582	KPN_00749	-	^{10 Lys tRNA}
838511	838586	+	76	152968582	KPN_00750	-	^{13 Val tRNA}
838590	838665	+	76	152968582	KPN_00751	-	^{10 Lys tRNA}
838812	838887	+	76	152968582	KPN_00752	-	^{10 Lys tRNA}
839021	839096	+	76	152968582	KPN_00753	-	^{10 Lys tRNA}
1157317	1157404	+	88	152968582	KPN_01008	-	^{08 Ser tRNA}
1200640	1200727	-	88	152968582	KPN_01049	-	^{08 Ser tRNA}
1205698	1205785	-	88	152968582	KPN_01055	-	^{08 Ser tRNA}
2199251	2199327	+	77	152968582	KPN_02005	-	^{13 Val tRNA}
2199332	2199408	+	77	152968582	KPN_02006	-	^{13 Val tRNA}
2199413	2199489	+	77	152968582	KPN_02007	-	^{13 Val tRNA}
2417158	2417242	+	85	152968582	KPN_02207	-	^{18 Tyr tRNA}
2417458	2417542	+	85	152968582	KPN_02208	-	^{18 Tyr tRNA}
2633031	2633117	-	87	152968582	KPN_02407	-	^{15 Leu tRNA}
2633131	2633204	-	74	152968582	KPN_02408	-	^{19 Cys tRNA}
2633245	2633320	-	76	152968582	KPN_02409	-	^{01 Gly tRNA}
2654426	2654515	-	90	152968582	KPN_02431	-	^{08 Ser tRNA}
2655507	2655582	+	76	152968582	KPN_02433	-	^{07 Asn tRNA}
2660391	2660466	+	76	152968582	KPN_02438	-	^{07 Asn tRNA}
2669313	2669388	-	76	152968582	KPN_02446	-	^{07 Asn tRNA}
2671146	2671221	+	76	152968582	KPN_02448	-	^{07 Asn tRNA}
2883338	2883414	+	77	152968582	KPN_02626	-	^{03 Pro tRNA}
3000199	3000273	+	75	152968582	KPN_02729	-	^{11 Arg tRNA}
3020597	3020672	-	76	152968582	KPN_02746	-	^{02 Ala tRNA}
3020714	3020789	-	76	152968582	KPN_02747	-	^{02 Ala tRNA}
3023488	3023563	+	76	152968582	KPN_02751	-	^{13 Val tRNA}
3023609	3023684	+	76	152968582	KPN_02752	-	^{13 Val tRNA}
3023731	3023806	+	76	152968582	KPN_02753	-	^{13 Val tRNA}
3023811	3023886	+	76	152968582	KPN_02754	-	^{10 Lys tRNA}
3199416	3199538	-	123	152968582	KPN_02911	-	5S ribosomal RNA (rrfG)
3199631	3202534	-	2904	152968582	KPN_02912	-	23S ribosomal RNA (rrlG)
3202717	3202792	-	76	152968582	KPN_02913	-	^{04 Glu tRNA}
3202873	3204416	-	1544	152968582	KPN_02914	-	16s ribosomal RNA (rrsG)
3321591	3321667	-	77	152968582	KPN_03023	-	^{11 Arg tRNA}
3321896	3321972	-	77	152968582	KPN_03024	-	^{11 Arg tRNA}
3322034	3322110	-	77	152968582	KPN_03025	-	^{11 Arg tRNA}
3322261	3322337	-	77	152968582	KPN_03026	-	^{11 Arg tRNA}
3322342	3322434	-	93	152968582	KPN_03027	-	^{08 Ser tRNA}
3474374	3474450	+	77	152968582	KPN_03165	-	^{16 Met tRNA}
3474484	3474560	+	77	152968582	KPN_03166	-	^{16 Met tRNA}
3474593	3474669	+	77	152968582	KPN_03167	-	^{16 Met tRNA}
3635024	3635097	-	74	152968582	KPN_03315	-	^{01 Gly tRNA}
3721015	3721090	+	76	152968582	KPN_03399	-	^{17 Phe tRNA}
3803103	3803178	+	76	152968582	KPN_03476	-	^{16 Met tRNA}
3941646	3941722	-	77	152968582	KPN_03579	-	^{16 Met tRNA}
3945653	3945739	-	87	152968582	KPN_03584	-	^{15 Leu tRNA}
4038339	4038461	-	123	152968582	KPN_03675	-	5S ribosomal RNA (rrfD)
4038498	4038573	-	76	152968582	KPN_03676	-	^{12 Thr tRNA}
4038583	4038705	-	123	152968582	KPN_03677	-	5S ribosomal RNA (rrfD)
4038798	4041701	-	2904	152968582	KPN_03678	-	23S ribosomal RNA (rrlD)
4041895	4043438	-	1544	152968582	KPN_03679	-	16s ribosomal RNA (rrsD)
4278138	4278214	-	77	152968582	KPN_03902	-	^{03 Pro tRNA}
4407608	4407698	+	91	152968582	KPN_04020	-	Sec tRNA
4558733	4560276	+	1544	152968582	KPN_04161	-	16s ribosomal RNA (rrsC)
4560357	4560432	+	76	152968582	KPN_04162	-	^{04 Glu tRNA}
4560615	4563518	+	2904	152968582	KPN_04163	-	23S ribosomal RNA (rrlC)
4563611	4563733	+	123	152968582	KPN_04164	-	5S ribosomal RNA (rrfC)
4663363	4664906	+	1544	152968582	KPN_04257	-	16s ribosomal RNA (rrsA)
4664973	4665049	+	77	152968582	KPN_04258	-	^{14 Ile tRNA}
4665156	4665231	+	76	152968582	KPN_04259	-	^{02 Ala tRNA}
4665401	4668304	+	2904	152968582	KPN_04260	-	23S ribosomal RNA (rrlA)
4668397	4668519	+	123	152968582	KPN_04261	-	5S ribosomal RNA (rrfA)
4668572	4668648	+	77	152968582	KPN_04262	-	^{06 Asp tRNA}
4668702	4668777	+	76	152968582	KPN_04263	-	^{20 Trp tRNA}
4706808	4706884	+	77	152968582	KPN_04297	-	^{11 Arg tRNA}
4706940	4707015	+	76	152968582	KPN_04298	-	^{09 His tRNA}
4707039	4707125	+	87	152968582	KPN_04299	-	^{15 Leu tRNA}
4707168	4707244	+	77	152968582	KPN_04300	-	^{03 Pro tRNA}
4755220	4756763	+	1544	152968582	KPN_04345	-	16s ribosomal RNA (rrsB)
4756827	4756903	+	77	152968582	KPN_04346	-	^{14 Ile tRNA}
4756940	4757015	+	76	152968582	KPN_04347	-	^{02 Ala tRNA}
4757185	4760088	+	2904	152968582	KPN_04348	-	23S ribosomal RNA (rrlB)
4760181	4760303	+	123	152968582	KPN_04349	-	5S ribosomal RNA (rrfB)
4764108	4764183	+	76	152968582	KPN_04353	-	^{12 Thr tRNA}
4764194	4764278	+	85	152968582	KPN_04354	-	^{18 Tyr tRNA}
4764394	4764468	+	75	152968582	KPN_04355	-	^{01 Gly tRNA}
4764474	4764549	+	76	152968582	KPN_04356	-	^{12 Thr tRNA}
4800349	4801892	+	1544	152968582	KPN_04389	-	16s ribosomal RNA (rrsE)
4801973	4802048	+	76	152968582	KPN_04390	-	^{04 Glu tRNA}
4802231	4805134	+	2904	152968582	KPN_04391	-	23S ribosomal RNA (rrlE)
4805326	4805448	+	123	152968582	KPN_04392	-	5S ribosomal RNA (rrfE)
4951947	4952022	-	76	152968582	KPN_04523	-	^{17 Phe tRNA}
4992982	4993057	+	76	152968582	KPN_04561	-	^{01 Gly tRNA}
4993126	4993201	+	76	152968582	KPN_04562	-	^{01 Gly tRNA}
4993274	4993349	+	76	152968582	KPN_04563	-	^{01 Gly tRNA}
5125867	5125951	+	85	152968582	KPN_04686	-	^{15 Leu tRNA}
5198391	5199934	+	1544	152968582	KPN_04744	-	16s ribosomal RNA (rrsH)
5200015	5200090	+	76	152968582	KPN_04745	-	^{04 Glu tRNA}
5200273	5203176	+	2904	152968582	KPN_04746	-	23S ribosomal RNA (rrl)
5203368	5203490	+	123	152968582	KPN_04747	-	5S ribosomal RNA (rrfG)
5282725	5282811	-	87	152968582	KPN_04824	-	^{15 Leu tRNA}
5282843	5282929	-	87	152968582	KPN_04825	-	^{15 Leu tRNA}
5282958	5283044	-	87	152968582	KPN_04826	-	^{15 Leu tRNA}