Материалы:NC 009783

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   LOCUS       NC_009783            3765351 bp    DNA     circular BCT 07-SEP-2007
   DEFINITION  Vibrio harveyi ATCC BAA-1116 chromosome I, complete sequence.
   ACCESSION   NC_009783
   VERSION     NC_009783.1  GI:156972381
   KEYWORDS    .
   SOURCE      Vibrio harveyi ATCC BAA-1116
     ORGANISM  Vibrio harveyi ATCC BAA-1116
               Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales;
               Vibrionaceae; Vibrio.
   REFERENCE   1  (bases 1 to 3765351)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (06-SEP-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   2  (bases 1 to 3765351)
     AUTHORS   Bassler,B., Clifton,S.W., Fulton,L., Delehaunty,K., Fronick,C.,
               Harrison,M., Markivic,C., Fulton,R., Tin-Wollam,A.-M., Shah,N.,
               Pepin,K., Nash,W., Thiruvilangam,P., Bhonagiri,V., Waters,C.,
               Tu,K.C., Irgon,J. and Wilson,R.K.
     CONSRTM   The Vibrio harveyi Genome Sequencing Project
     TITLE     Direct Submission
     JOURNAL   Submitted (16-AUG-2007) Genetics, Genome Sequencing Center, 4444
               Forest Park Parkway, St. Louis, MO 63108, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000789.
               Vibrio harveyi belongs to the group of bioluminescent bacteria that
               'glow in the dark,' just as the commonly known firefly. Based on
               their 16S  ribosomal RNA (rRNA) classification, they belong to the
               group of bacteria known as Proteobacteria, which is further
               sub-divided into five groups, including the gamma proteobacteria.
               This group includes many families, one of which is the Vibrionaceae
               (bioluminescent bacteria). One of the Vibrios is a human pathogen
               and causes cholera. Vibrio harveyi can be found globally in marine
               environments, either in a free-living state or in symbiosis with
               marine life.  The sequenced strain is BB120, ATCC BAA-1116
               http://www.atcc.org/common/catalog/numSearch/numResults.cfm
               Sequence/Assembly
               The genome of Vibrio harveyi was sequenced to 8X coverage using a
               combination of plasmid and fosmid end sequences. Additional 454
               sequence reads bring the present coverage to 10.8X. Assembly was
               performed using the PCAP software (Genome Res. 13(9):2164-70 2003).
                The genome has  undergone automated sequence improvement
               (pre-finishing) followed by  manual finishing, and automated
               annotation. The National Science  Foundation (NSF) is providing
               funding for the complete sequence of the  Vibrio harveyi genome.
               
               Annotation
               Coding sequences were predicted using GeneMark v3.3 and Glimmer2
               v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were
               blasted against NCBI's non-redundant (NR) database and predictions
               generated based on protein alignments. RNA genes were determined
               using tRNAscan-SE 1.23 or Rfam v8.0. Gene names are generated at
               the contig level and may not necessarily reflect any known order or
               orientation between contigs.For questions regarding this assembly
               or project, please visit the Vibrio harveyi genome page
               (http://genome.wustl.edu/genome.cgi?GENOME=Vibrio%20harveyi) and
               choose the designated contact person.
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
818	1359	-	542	156972381	VIBHAR_00002	-	small subunit ribosomal RNA
105772	105845	-	74	156972381	VIBHAR_00100	-	^{16 Met tRNA}
106007	106079	-	73	156972381	VIBHAR_00101	-	^{01 Gly tRNA}
106118	106190	-	73	156972381	VIBHAR_00102	-	^{01 Gly tRNA}
106229	106301	-	73	156972381	VIBHAR_00103	-	^{01 Gly tRNA}
106323	106396	-	74	156972381	VIBHAR_00104	-	^{16 Met tRNA}
106439	106511	-	73	156972381	VIBHAR_00105	-	^{01 Gly tRNA}
106605	106678	-	74	156972381	VIBHAR_00106	-	^{16 Met tRNA}
106721	106793	-	73	156972381	VIBHAR_00107	-	^{01 Gly tRNA}
106815	106888	-	74	156972381	VIBHAR_00108	-	^{16 Met tRNA}
106931	107003	-	73	156972381	VIBHAR_00109	-	^{01 Gly tRNA}
107025	107098	-	74	156972381	VIBHAR_00110	-	^{16 Met tRNA}
107141	107213	-	73	156972381	VIBHAR_00111	-	^{01 Gly tRNA}
190817	190933	-	117	156972381	VIBHAR_00193	-	5S ribosomal RNA
194249	194321	-	73	156972381	VIBHAR_00195	-	^{02 Ala tRNA}
194368	194441	-	74	156972381	VIBHAR_00196	-	^{14 Ile tRNA}
195530	196071	-	542	156972381	VIBHAR_00198	-	small subunit ribosomal RNA
196468	196584	-	117	156972381	VIBHAR_00199	-	5S ribosomal RNA
199870	199942	-	73	156972381	VIBHAR_00201	-	^{02 Ala tRNA}
199989	200062	-	74	156972381	VIBHAR_00202	-	^{14 Ile tRNA}
201151	201692	-	542	156972381	VIBHAR_00204	-	small subunit ribosomal RNA
235591	235663	-	73	156972381	VIBHAR_00234	-	^{12 Thr tRNA}
235680	235751	-	72	156972381	VIBHAR_00235	-	^{01 Gly tRNA}
235790	235871	-	82	156972381	VIBHAR_00236	-	^{18 Tyr tRNA}
235927	235999	-	73	156972381	VIBHAR_00237	-	^{12 Thr tRNA}
243017	243090	-	74	156972381	VIBHAR_00245	-	^{20 Trp tRNA}
243162	243235	-	74	156972381	VIBHAR_00246	-	^{06 Asp tRNA}
243268	243384	-	117	156972381	VIBHAR_00247	-	5S ribosomal RNA
246718	246790	-	73	156972381	VIBHAR_00250	-	^{13 Val tRNA}
246824	246896	-	73	156972381	VIBHAR_00251	-	^{10 Lys tRNA}
246902	246974	-	73	156972381	VIBHAR_00252	-	^{04 Glu tRNA}
248088	248629	-	542	156972381	VIBHAR_00254	-	small subunit ribosomal RNA
311421	311508	-	88	156972381	VIBHAR_00325	-	^{08 Ser tRNA}
311600	311716	-	117	156972381	VIBHAR_00326	-	5S ribosomal RNA
315032	315104	-	73	156972381	VIBHAR_00328	-	^{02 Ala tRNA}
315151	315224	-	74	156972381	VIBHAR_00329	-	^{14 Ile tRNA}
316276	316817	-	542	156972381	VIBHAR_00331	-	small subunit ribosomal RNA
336058	336477	+	420	156972381	VIBHAR_00349	-	CsrB/RsmB RNA family
359456	359529	-	74	156972381	VIBHAR_00373	-	^{06 Asp tRNA}
359561	359677	-	117	156972381	VIBHAR_00374	-	5S ribosomal RNA
359804	362688	+	2885	156972381	VIBHAR_03723	-	23S ribosomal RNA
363014	363086	-	73	156972381	VIBHAR_00375	-	^{13 Val tRNA}
363120	363192	-	73	156972381	VIBHAR_00376	-	^{10 Lys tRNA}
363198	363270	-	73	156972381	VIBHAR_00377	-	^{04 Glu tRNA}
364348	364889	-	542	156972381	VIBHAR_00379	-	small subunit ribosomal RNA
449630	450171	+	542	156972381	VIBHAR_00464	-	small subunit ribosomal RNA
451285	451357	+	73	156972381	VIBHAR_00466	-	^{04 Glu tRNA}
451363	451435	+	73	156972381	VIBHAR_00467	-	^{10 Lys tRNA}
451448	451520	+	73	156972381	VIBHAR_00468	-	^{02 Ala tRNA}
451561	451633	+	73	156972381	VIBHAR_00469	-	^{13 Val tRNA}
454882	454998	+	117	156972381	VIBHAR_00472	-	5S ribosomal RNA
455031	455104	+	74	156972381	VIBHAR_00473	-	^{06 Asp tRNA}
468027	468100	+	74	156972381	VIBHAR_00485	-	^{11 Arg tRNA}
468139	468211	+	73	156972381	VIBHAR_00486	-	^{09 His tRNA}
468291	468364	+	74	156972381	VIBHAR_00487	-	^{03 Pro tRNA}
468414	468486	+	73	156972381	VIBHAR_00488	-	^{09 His tRNA}
468554	468627	+	74	156972381	VIBHAR_00489	-	^{03 Pro tRNA}
557336	557451	+	116	156972381	VIBHAR_00573	-	Spot 42 RNA
835692	835764	-	73	156972381	VIBHAR_00847	-	^{16 Met tRNA}
884627	884934	+	308	156972381	VIBHAR_00893	-	RNA component of RNase P
1020273	1020814	+	542	156972381	VIBHAR_01008	-	small subunit ribosomal RNA
1021935	1022007	+	73	156972381	VIBHAR_01010	-	^{02 Ala tRNA}
1022052	1022124	+	73	156972381	VIBHAR_01011	-	^{04 Glu tRNA}
1025411	1025527	+	117	156972381	VIBHAR_01013	-	5S ribosomal RNA
1025559	1025632	+	74	156972381	VIBHAR_01014	-	^{06 Asp tRNA}
1025671	1025744	+	74	156972381	VIBHAR_01015	-	^{20 Trp tRNA}
1139978	1140344	-	367	156972381	VIBHAR_01123	-	tmRNA
1200401	1200523	-	123	156972381	VIBHAR_01182	-	GcvB RNA
1252736	1252817	-	82	156972381	VIBHAR_01233	-	^{15 Leu tRNA}
1252875	1252946	-	72	156972381	VIBHAR_01235	-	^{05 Gln tRNA}
1252996	1253077	-	82	156972381	VIBHAR_01236	-	^{15 Leu tRNA}
1253102	1253183	-	82	156972381	VIBHAR_01237	-	^{15 Leu tRNA}
1253205	1253278	-	74	156972381	VIBHAR_01238	-	^{16 Met tRNA}
1253305	1253386	-	82	156972381	VIBHAR_01239	-	^{15 Leu tRNA}
1253460	1253533	-	74	156972381	VIBHAR_01240	-	^{16 Met tRNA}
1253616	1253687	-	72	156972381	VIBHAR_01241	-	^{05 Gln tRNA}
1253722	1253803	-	82	156972381	VIBHAR_01242	-	^{15 Leu tRNA}
1253846	1253919	-	74	156972381	VIBHAR_01243	-	^{16 Met tRNA}
1269123	1269196	+	74	156972381	VIBHAR_01261	-	^{03 Pro tRNA}
1286663	1286736	-	74	156972381	VIBHAR_01275	-	^{11 Arg tRNA}
1405757	1405830	+	74	156972381	VIBHAR_01392	-	^{11 Arg tRNA}
1458919	1459000	-	82	156972381	VIBHAR_01440	-	^{18 Tyr tRNA}
1459104	1459185	-	82	156972381	VIBHAR_01441	-	^{18 Tyr tRNA}
1459289	1459370	-	82	156972381	VIBHAR_01442	-	^{18 Tyr tRNA}
1459474	1459555	-	82	156972381	VIBHAR_01443	-	^{18 Tyr tRNA}
1472470	1472569	+	100	156972381	VIBHAR_01455	-	bacterial signal recognition particle RNA
1631898	1631982	+	85	156972381	VIBHAR_01622	-	^{08 Ser tRNA}
2183616	2183689	+	74	156972381	VIBHAR_02186	-	^{13 Val tRNA}
2183739	2183812	+	74	156972381	VIBHAR_02187	-	^{13 Val tRNA}
2767549	2767621	-	73	156972381	VIBHAR_02742	-	^{01 Gly tRNA}
2767636	2767719	-	84	156972381	VIBHAR_02743	-	^{15 Leu tRNA}
2767801	2767873	-	73	156972381	VIBHAR_02744	-	^{01 Gly tRNA}
2767914	2767984	-	71	156972381	VIBHAR_02745	-	^{19 Cys tRNA}
2851918	2851989	+	72	156972381	VIBHAR_02828	-	^{01 Gly tRNA}
2983624	2983718	+	95	156972381	VIBHAR_02960	-	Qrr RNA
2986404	2986476	+	73	156972381	VIBHAR_02962	-	^{07 Asn tRNA}
3051971	3052058	+	88	156972381	VIBHAR_03029	-	^{08 Ser tRNA}
3272091	3272457	-	367	156972381	VIBHAR_03245	-	CsrB/RsmB RNA family
3438629	3438702	-	74	156972381	VIBHAR_03399	-	^{16 Met tRNA}
3438762	3438842	-	81	156972381	VIBHAR_03400	-	^{15 Leu tRNA}
3554360	3554433	-	74	156972381	VIBHAR_03499	-	^{11 Arg tRNA}
3554496	3554569	-	74	156972381	VIBHAR_03500	-	^{11 Arg tRNA}
3554630	3554703	-	74	156972381	VIBHAR_03501	-	^{11 Arg tRNA}
3554764	3554837	-	74	156972381	VIBHAR_03502	-	^{11 Arg tRNA}
3554898	3554971	-	74	156972381	VIBHAR_03503	-	^{11 Arg tRNA}
3555032	3555105	-	74	156972381	VIBHAR_03504	-	^{11 Arg tRNA}
3555194	3555282	-	89	156972381	VIBHAR_03505	-	^{08 Ser tRNA}
3555315	3555388	-	74	156972381	VIBHAR_03506	-	^{11 Arg tRNA}
3555423	3555511	-	89	156972381	VIBHAR_03508	-	^{08 Ser tRNA}
3603756	3603940	+	185	156972381	VIBHAR_03553	-	6S / SsrS RNA
3640404	3640476	+	73	156972381	VIBHAR_03594	-	^{17 Phe tRNA}
3640531	3640603	+	73	156972381	VIBHAR_03595	-	^{12 Thr tRNA}
3640614	3640686	+	73	156972381	VIBHAR_03596	-	^{17 Phe tRNA}
3640733	3640805	+	73	156972381	VIBHAR_03597	-	^{07 Asn tRNA}
3640878	3640950	+	73	156972381	VIBHAR_03598	-	^{12 Thr tRNA}
3640964	3641036	+	73	156972381	VIBHAR_03599	-	^{17 Phe tRNA}
3641082	3641155	+	74	156972381	VIBHAR_03600	-	^{07 Asn tRNA}
3643310	3643382	+	73	156972381	VIBHAR_03603	-	^{17 Phe tRNA}
3643437	3643509	+	73	156972381	VIBHAR_03604	-	^{12 Thr tRNA}
3643534	3643606	+	73	156972381	VIBHAR_03605	-	^{07 Asn tRNA}
3643649	3643721	+	73	156972381	VIBHAR_03606	-	^{12 Thr tRNA}
3643740	3643812	+	73	156972381	VIBHAR_03607	-	^{07 Asn tRNA}
3645970	3646043	-	74	156972381	VIBHAR_03609	-	^{06 Asp tRNA}
3646075	3646191	-	117	156972381	VIBHAR_03610	-	5S ribosomal RNA
3646252	3646324	-	73	156972381	VIBHAR_03611	-	^{12 Thr tRNA}
3646425	3646541	-	117	156972381	VIBHAR_03612	-	5S ribosomal RNA
3649836	3649908	-	73	156972381	VIBHAR_03615	-	^{02 Ala tRNA}
3649955	3650028	-	74	156972381	VIBHAR_03616	-	^{14 Ile tRNA}
3651117	3651658	-	542	156972381	VIBHAR_03618	-	small subunit ribosomal RNA
3663783	3663864	-	82	156972381	VIBHAR_03630	-	^{15 Leu tRNA}
3759840	3759913	-	74	156972381	VIBHAR_03716	-	^{06 Asp tRNA}
3759982	3760098	-	117	156972381	VIBHAR_03717	-	5S ribosomal RNA
3763418	3763490	-	73	156972381	VIBHAR_03719	-	^{02 Ala tRNA}
3763537	3763610	-	74	156972381	VIBHAR_03720	-	^{14 Ile tRNA}
3764699	3765240	-	542	156972381	VIBHAR_03722	-	small subunit ribosomal RNA