Геном прокариот/Материалы:NC 002937

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   LOCUS       NC_002937            3570858 bp    DNA     circular BCT 19-JUN-2007
   DEFINITION  Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete
               genome.
   ACCESSION   NC_002937
   VERSION     NC_002937.3  GI:46562128
   KEYWORDS    .
   SOURCE      Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
     ORGANISM  Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
               Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales;
               Desulfovibrionaceae; Desulfovibrio.
   REFERENCE   1  (bases 1 to 3570858)
     AUTHORS   Heidelberg,J.F., Seshadri,R., Haveman,S.A., Hemme,C.L.,
               Paulsen,I.T., Kolonay,J.F., Eisen,J.A., Ward,N., Methe,B.,
               Brinkac,L.M., Daugherty,S.C., Deboy,R.T., Dodson,R.J., Durkin,A.S.,
               Madupu,R., Nelson,W.C., Sullivan,S.A., Fouts,D., Haft,D.H.,
               Selengut,J., Peterson,J.D., Davidsen,T.M., Zafar,N., Zhou,L.,
               Radune,D., Dimitrov,G., Hance,M., Tran,K., Khouri,H., Gill,J.,
               Utterback,T.R., Feldblyum,T.V., Wall,J.D., Voordouw,G. and
               Fraser,C.M.
     TITLE     The genome sequence of the anaerobic, sulfate-reducing bacterium
               Desulfovibrio vulgaris Hildenborough
     JOURNAL   Nat. Biotechnol. 22 (5), 554-559 (2004)
      PUBMED   15077118
   REFERENCE   2  (bases 1 to 3570858)
     AUTHORS   Heidelberg,J.F., Seshadri,R., Haveman,S.A., Hemme,C.L.,
               Paulsen,I.T., Kolonay,J.F., Eisen,J.A., Ward,N., Methe,B.,
               Brinkac,L.M., Daugherty,S.C., DeBoy,R.T., Dodson,R.J., Durkin,A.S.,
               Madupu,R., Nelson,W.C., Sullivan,S.A., Fouts,D.E., Haft,D.H.,
               Selengut,J., Peterson,J.D., Davidsen,T.M., Zafar,N., Zhou,L.,
               Radune,D., Dimitrov,G., Hance,M., Tran,K., Khouri,H.M., Gill,J.,
               Utterback,T.R., Feldblyum,T.V., Wall,J.D., Voordouw,G. and
               Fraser,C.M.
     TITLE     Direct Submission
     JOURNAL   Submitted (18-MAR-2004) The Institute for Genomic Research, 9712
               Medical Center Dr, Rockville, MD 20850, USA
   REFERENCE   3  (bases 1 to 3570858)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (15-MAR-2004) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from AE017285.
               On Apr 26, 2004 this sequence version replaced gi:38154461.
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
19895 19970 + 76 46562128 DVU_tRNA-Ala-1 - 02 Ala tRNA
30047 30122 + 76 46562128 DVU_tRNA-Ala-2 - 02 Ala tRNA
105901 107441 + 1541 46562128 Dv16SA - 16S ribosomal RNA
107515 107591 + 77 46562128 DVU_tRNA-Ile-1 - 14 Ile tRNA
107614 107689 + 76 46562128 DVU_tRNA-Ala-3 - 02 Ala tRNA
107842 110762 + 2921 46562128 Dv23SA - 23S ribosomal RNA
110870 110986 + 117 46562128 Dv5SA - 5S ribosomal RNA
189726 189812 - 87 46562128 DVU_tRNA-Leu-1 - 15 Leu tRNA
233143 233215 - 73 46562128 DVU_tRNA-Pseudo-1 - Xaa tRNA
270532 270607 - 76 46562128 DVU_tRNA-Lys-1 - 10 Lys tRNA
294897 296437 + 1541 46562128 Dv16SB - 16S ribosomal RNA
296511 296587 + 77 46562128 DVU_tRNA-Ile-2 - 14 Ile tRNA
296610 296685 + 76 46562128 DVU_tRNA-Ala-4 - 02 Ala tRNA
296838 299758 + 2921 46562128 Dv23SB - 23S ribosomal RNA
299866 299982 + 117 46562128 Dv5SB - 5S ribosomal RNA
318835 318910 + 76 46562128 DVU_tRNA-Val-1 - 13 Val tRNA
318914 318990 + 77 46562128 DVU_tRNA-Asp-1 - 06 Asp tRNA
319062 319138 + 77 46562128 DVU_tRNA-Asp-2 - 06 Asp tRNA
407052 407127 - 76 46562128 DVU_tRNA-Thr-1 - 12 Thr tRNA
417073 417149 + 77 46562128 DVU_tRNA-Met-1 - 16 Met tRNA
514247 514333 - 87 46562128 DVU_tRNA-Leu-2 - 15 Leu tRNA
672676 672752 - 77 46562128 DVU_tRNA-Glu-1 - 04 Glu tRNA
709268 709344 + 77 46562128 DVU_tRNA-Glu-2 - 04 Glu tRNA
775707 775798 + 92 46562128 DVU_tRNA-Ser-1 - 08 Ser tRNA
878976 879067 - 92 46562128 DVU_tRNA-Ser-2 - 08 Ser tRNA
911334 911428 - 95 46562128 DVU_tRNA-Ser-3 - 08 Ser tRNA
1093354 1093429 - 76 46562128 DVU_tRNA-Lys-2 - 10 Lys tRNA
1093621 1093696 - 76 46562128 DVU_tRNA-Lys-3 - 10 Lys tRNA
1203891 1203966 + 76 46562128 DVU_tRNA-Thr-2 - 12 Thr tRNA
1369507 1369596 - 90 46562128 DVU_tRNA-SeC(p)-1 - Sec tRNA
1409622 1409706 + 85 46562128 DVU_tRNA-Leu-3 - 15 Leu tRNA
1533841 1534196 - 356 46562128 DvrnpB1 - RNase P, RNA component
1536123 1536198 - 76 46562128 DVU_tRNA-Met-2 - 16 Met tRNA
1596079 1596173 - 95 46562128 DVU_tRNA-Ser-4 - 08 Ser tRNA
1648221 1648297 - 77 46562128 DVU_tRNA-Arg-1 - 11 Arg tRNA
1648317 1648393 - 77 46562128 DVU_tRNA-Arg-2 - 11 Arg tRNA
1648426 1648502 - 77 46562128 DVU_tRNA-Arg-3 - 11 Arg tRNA
1658278 1658353 - 76 46562128 DVU_tRNA-Gln-1 - 05 Gln tRNA
1723546 1723622 - 77 46562128 DVU_tRNA-Pro-1 - 03 Pro tRNA
1740153 1740229 - 77 46562128 DVU_tRNA-Met-3 - 16 Met tRNA
1755794 1755880 - 87 46562128 DVU_tRNA-Leu-4 - 15 Leu tRNA
1770704 1770780 + 77 46562128 DVU_tRNA-Arg-4 - 11 Arg tRNA
1922270 1922621 + 352 46562128 DvtmRNA1 - 10Sa RNA
2069693 2069779 + 87 46562128 DVU_tRNA-Leu-5 - 15 Leu tRNA
2129162 2129238 - 77 46562128 DVU_tRNA-Met-4 - 16 Met tRNA
2163497 2163574 + 78 46562128 DVU_tRNA-Pro-2 - 03 Pro tRNA
2250385 2250459 + 75 46562128 DVU_tRNA-Gly-1 - 01 Gly tRNA
2250471 2250545 + 75 46562128 DVU_tRNA-Cys-1 - 19 Cys tRNA
2250553 2250627 + 75 46562128 DVU_tRNA-Gly-2 - 01 Gly tRNA
2250660 2250734 + 75 46562128 DVU_tRNA-Gly-3 - 01 Gly tRNA
2303987 2304061 + 75 46562128 DVU_tRNA-Gly-4 - 01 Gly tRNA
2356165 2356240 + 76 46562128 DVU_tRNA-Ala-5 - 02 Ala tRNA
2474950 2475025 + 76 46562128 DVU_tRNA-Asn-1 - 07 Asn tRNA
2493503 2493578 + 76 46562128 DVU_tRNA-Asn-2 - 07 Asn tRNA
2559112 2559228 - 117 46562128 DV_r01 - 5S ribosomal RNA
2559270 2559386 - 117 46562128 Dv5SC - 5S ribosomal RNA
2559494 2562414 - 2921 46562128 Dv23SC - 23S ribosomal RNA
2562567 2562642 - 76 46562128 DVU_tRNA-Ala-6 - 02 Ala tRNA
2562665 2562741 - 77 46562128 DVU_tRNA-Ile-3 - 14 Ile tRNA
2562815 2564355 - 1541 46562128 Dv16SC - 16S ribosomal RNA
2651265 2651339 - 75 46562128 DVU_tRNA-Val-2 - 13 Val tRNA
2691138 2691224 - 87 46562128 DVU_tRNA-Leu-6 - 15 Leu tRNA
2692669 2692785 - 117 46562128 Dv5SD - 5S ribosomal RNA
2692893 2695813 - 2921 46562128 Dv23SD - 23S ribosomal RNA
2695966 2696041 - 76 46562128 DVU_tRNA-Ala-7 - 02 Ala tRNA
2696064 2696140 - 77 46562128 DVU_tRNA-Ile-4 - 14 Ile tRNA
2696214 2697754 - 1541 46562128 Dv16SD - 16S ribosomal RNA
2834620 2834706 - 87 46562128 DVU_tRNA-Leu-7 - 15 Leu tRNA
2977658 2977734 - 77 46562128 DVU_tRNA-Arg-5 - 11 Arg tRNA
3019037 3019112 + 76 46562128 DVU_tRNA-Thr-3 - 12 Thr tRNA
3019119 3019204 + 86 46562128 DVU_tRNA-Tyr-1 - 18 Tyr tRNA
3019262 3019338 + 77 46562128 DVU_tRNA-Gly-5 - 01 Gly tRNA
3019375 3019450 + 76 46562128 DVU_tRNA-Thr-4 - 12 Thr tRNA
3020869 3020945 + 77 46562128 DVU_tRNA-Trp-1 - 20 Trp tRNA
3061754 3061828 + 75 46562128 DVU_tRNA-Gln-2 - 05 Gln tRNA
3061846 3061923 + 78 46562128 DVU_tRNA-Glu-3 - 04 Glu tRNA
3163832 3163908 + 77 46562128 DVU_tRNA-Pro-3 - 03 Pro tRNA
3247063 3247179 - 117 46562128 Dv5SE - 5S ribosomal RNA
3247287 3250207 - 2921 46562128 Dv23SE - 23S ribosomal RNA
3250360 3250435 - 76 46562128 DVU_tRNA-Ala-8 - 02 Ala tRNA
3250458 3250534 - 77 46562128 DVU_tRNA-Ile-5 - 14 Ile tRNA
3250608 3252148 - 1541 46562128 Dv16SE - 16S ribosomal RNA
3287469 3287544 - 76 46562128 DVU_tRNA-Val-3 - 13 Val tRNA
3422895 3422970 - 76 46562128 DVU_tRNA-Phe-1 - 17 Phe tRNA
3433963 3434038 + 76 46562128 DVU_tRNA-His-1 - 09 His tRNA
3484533 3484609 - 77 46562128 DVU_tRNA-Arg-6 - 11 Arg tRNA