Геном прокариот/Материалы:NC 002937

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_002937            3570858 bp    DNA     circular BCT 19-JUN-2007
   DEFINITION  Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete
               genome.
   ACCESSION   NC_002937
   VERSION     NC_002937.3  GI:46562128
   KEYWORDS    .
   SOURCE      Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
     ORGANISM  Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
               Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales;
               Desulfovibrionaceae; Desulfovibrio.
   REFERENCE   1  (bases 1 to 3570858)
     AUTHORS   Heidelberg,J.F., Seshadri,R., Haveman,S.A., Hemme,C.L.,
               Paulsen,I.T., Kolonay,J.F., Eisen,J.A., Ward,N., Methe,B.,
               Brinkac,L.M., Daugherty,S.C., Deboy,R.T., Dodson,R.J., Durkin,A.S.,
               Madupu,R., Nelson,W.C., Sullivan,S.A., Fouts,D., Haft,D.H.,
               Selengut,J., Peterson,J.D., Davidsen,T.M., Zafar,N., Zhou,L.,
               Radune,D., Dimitrov,G., Hance,M., Tran,K., Khouri,H., Gill,J.,
               Utterback,T.R., Feldblyum,T.V., Wall,J.D., Voordouw,G. and
               Fraser,C.M.
     TITLE     The genome sequence of the anaerobic, sulfate-reducing bacterium
               Desulfovibrio vulgaris Hildenborough
     JOURNAL   Nat. Biotechnol. 22 (5), 554-559 (2004)
      PUBMED   15077118
   REFERENCE   2  (bases 1 to 3570858)
     AUTHORS   Heidelberg,J.F., Seshadri,R., Haveman,S.A., Hemme,C.L.,
               Paulsen,I.T., Kolonay,J.F., Eisen,J.A., Ward,N., Methe,B.,
               Brinkac,L.M., Daugherty,S.C., DeBoy,R.T., Dodson,R.J., Durkin,A.S.,
               Madupu,R., Nelson,W.C., Sullivan,S.A., Fouts,D.E., Haft,D.H.,
               Selengut,J., Peterson,J.D., Davidsen,T.M., Zafar,N., Zhou,L.,
               Radune,D., Dimitrov,G., Hance,M., Tran,K., Khouri,H.M., Gill,J.,
               Utterback,T.R., Feldblyum,T.V., Wall,J.D., Voordouw,G. and
               Fraser,C.M.
     TITLE     Direct Submission
     JOURNAL   Submitted (18-MAR-2004) The Institute for Genomic Research, 9712
               Medical Center Dr, Rockville, MD 20850, USA
   REFERENCE   3  (bases 1 to 3570858)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (15-MAR-2004) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from AE017285.
               On Apr 26, 2004 this sequence version replaced gi:38154461.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
19895	19970	+	76	46562128	DVU_tRNA-Ala-1	-	^{02 Ala tRNA}
30047	30122	+	76	46562128	DVU_tRNA-Ala-2	-	^{02 Ala tRNA}
105901	107441	+	1541	46562128	Dv16SA	-	16S ribosomal RNA
107515	107591	+	77	46562128	DVU_tRNA-Ile-1	-	^{14 Ile tRNA}
107614	107689	+	76	46562128	DVU_tRNA-Ala-3	-	^{02 Ala tRNA}
107842	110762	+	2921	46562128	Dv23SA	-	23S ribosomal RNA
110870	110986	+	117	46562128	Dv5SA	-	5S ribosomal RNA
189726	189812	-	87	46562128	DVU_tRNA-Leu-1	-	^{15 Leu tRNA}
233143	233215	-	73	46562128	DVU_tRNA-Pseudo-1	-	Xaa tRNA
270532	270607	-	76	46562128	DVU_tRNA-Lys-1	-	^{10 Lys tRNA}
294897	296437	+	1541	46562128	Dv16SB	-	16S ribosomal RNA
296511	296587	+	77	46562128	DVU_tRNA-Ile-2	-	^{14 Ile tRNA}
296610	296685	+	76	46562128	DVU_tRNA-Ala-4	-	^{02 Ala tRNA}
296838	299758	+	2921	46562128	Dv23SB	-	23S ribosomal RNA
299866	299982	+	117	46562128	Dv5SB	-	5S ribosomal RNA
318835	318910	+	76	46562128	DVU_tRNA-Val-1	-	^{13 Val tRNA}
318914	318990	+	77	46562128	DVU_tRNA-Asp-1	-	^{06 Asp tRNA}
319062	319138	+	77	46562128	DVU_tRNA-Asp-2	-	^{06 Asp tRNA}
407052	407127	-	76	46562128	DVU_tRNA-Thr-1	-	^{12 Thr tRNA}
417073	417149	+	77	46562128	DVU_tRNA-Met-1	-	^{16 Met tRNA}
514247	514333	-	87	46562128	DVU_tRNA-Leu-2	-	^{15 Leu tRNA}
672676	672752	-	77	46562128	DVU_tRNA-Glu-1	-	^{04 Glu tRNA}
709268	709344	+	77	46562128	DVU_tRNA-Glu-2	-	^{04 Glu tRNA}
775707	775798	+	92	46562128	DVU_tRNA-Ser-1	-	^{08 Ser tRNA}
878976	879067	-	92	46562128	DVU_tRNA-Ser-2	-	^{08 Ser tRNA}
911334	911428	-	95	46562128	DVU_tRNA-Ser-3	-	^{08 Ser tRNA}
1093354	1093429	-	76	46562128	DVU_tRNA-Lys-2	-	^{10 Lys tRNA}
1093621	1093696	-	76	46562128	DVU_tRNA-Lys-3	-	^{10 Lys tRNA}
1203891	1203966	+	76	46562128	DVU_tRNA-Thr-2	-	^{12 Thr tRNA}
1369507	1369596	-	90	46562128	DVU_tRNA-SeC(p)-1	-	Sec tRNA
1409622	1409706	+	85	46562128	DVU_tRNA-Leu-3	-	^{15 Leu tRNA}
1533841	1534196	-	356	46562128	DvrnpB1	-	RNase P, RNA component
1536123	1536198	-	76	46562128	DVU_tRNA-Met-2	-	^{16 Met tRNA}
1596079	1596173	-	95	46562128	DVU_tRNA-Ser-4	-	^{08 Ser tRNA}
1648221	1648297	-	77	46562128	DVU_tRNA-Arg-1	-	^{11 Arg tRNA}
1648317	1648393	-	77	46562128	DVU_tRNA-Arg-2	-	^{11 Arg tRNA}
1648426	1648502	-	77	46562128	DVU_tRNA-Arg-3	-	^{11 Arg tRNA}
1658278	1658353	-	76	46562128	DVU_tRNA-Gln-1	-	^{05 Gln tRNA}
1723546	1723622	-	77	46562128	DVU_tRNA-Pro-1	-	^{03 Pro tRNA}
1740153	1740229	-	77	46562128	DVU_tRNA-Met-3	-	^{16 Met tRNA}
1755794	1755880	-	87	46562128	DVU_tRNA-Leu-4	-	^{15 Leu tRNA}
1770704	1770780	+	77	46562128	DVU_tRNA-Arg-4	-	^{11 Arg tRNA}
1922270	1922621	+	352	46562128	DvtmRNA1	-	10Sa RNA
2069693	2069779	+	87	46562128	DVU_tRNA-Leu-5	-	^{15 Leu tRNA}
2129162	2129238	-	77	46562128	DVU_tRNA-Met-4	-	^{16 Met tRNA}
2163497	2163574	+	78	46562128	DVU_tRNA-Pro-2	-	^{03 Pro tRNA}
2250385	2250459	+	75	46562128	DVU_tRNA-Gly-1	-	^{01 Gly tRNA}
2250471	2250545	+	75	46562128	DVU_tRNA-Cys-1	-	^{19 Cys tRNA}
2250553	2250627	+	75	46562128	DVU_tRNA-Gly-2	-	^{01 Gly tRNA}
2250660	2250734	+	75	46562128	DVU_tRNA-Gly-3	-	^{01 Gly tRNA}
2303987	2304061	+	75	46562128	DVU_tRNA-Gly-4	-	^{01 Gly tRNA}
2356165	2356240	+	76	46562128	DVU_tRNA-Ala-5	-	^{02 Ala tRNA}
2474950	2475025	+	76	46562128	DVU_tRNA-Asn-1	-	^{07 Asn tRNA}
2493503	2493578	+	76	46562128	DVU_tRNA-Asn-2	-	^{07 Asn tRNA}
2559112	2559228	-	117	46562128	DV_r01	-	5S ribosomal RNA
2559270	2559386	-	117	46562128	Dv5SC	-	5S ribosomal RNA
2559494	2562414	-	2921	46562128	Dv23SC	-	23S ribosomal RNA
2562567	2562642	-	76	46562128	DVU_tRNA-Ala-6	-	^{02 Ala tRNA}
2562665	2562741	-	77	46562128	DVU_tRNA-Ile-3	-	^{14 Ile tRNA}
2562815	2564355	-	1541	46562128	Dv16SC	-	16S ribosomal RNA
2651265	2651339	-	75	46562128	DVU_tRNA-Val-2	-	^{13 Val tRNA}
2691138	2691224	-	87	46562128	DVU_tRNA-Leu-6	-	^{15 Leu tRNA}
2692669	2692785	-	117	46562128	Dv5SD	-	5S ribosomal RNA
2692893	2695813	-	2921	46562128	Dv23SD	-	23S ribosomal RNA
2695966	2696041	-	76	46562128	DVU_tRNA-Ala-7	-	^{02 Ala tRNA}
2696064	2696140	-	77	46562128	DVU_tRNA-Ile-4	-	^{14 Ile tRNA}
2696214	2697754	-	1541	46562128	Dv16SD	-	16S ribosomal RNA
2834620	2834706	-	87	46562128	DVU_tRNA-Leu-7	-	^{15 Leu tRNA}
2977658	2977734	-	77	46562128	DVU_tRNA-Arg-5	-	^{11 Arg tRNA}
3019037	3019112	+	76	46562128	DVU_tRNA-Thr-3	-	^{12 Thr tRNA}
3019119	3019204	+	86	46562128	DVU_tRNA-Tyr-1	-	^{18 Tyr tRNA}
3019262	3019338	+	77	46562128	DVU_tRNA-Gly-5	-	^{01 Gly tRNA}
3019375	3019450	+	76	46562128	DVU_tRNA-Thr-4	-	^{12 Thr tRNA}
3020869	3020945	+	77	46562128	DVU_tRNA-Trp-1	-	^{20 Trp tRNA}
3061754	3061828	+	75	46562128	DVU_tRNA-Gln-2	-	^{05 Gln tRNA}
3061846	3061923	+	78	46562128	DVU_tRNA-Glu-3	-	^{04 Glu tRNA}
3163832	3163908	+	77	46562128	DVU_tRNA-Pro-3	-	^{03 Pro tRNA}
3247063	3247179	-	117	46562128	Dv5SE	-	5S ribosomal RNA
3247287	3250207	-	2921	46562128	Dv23SE	-	23S ribosomal RNA
3250360	3250435	-	76	46562128	DVU_tRNA-Ala-8	-	^{02 Ala tRNA}
3250458	3250534	-	77	46562128	DVU_tRNA-Ile-5	-	^{14 Ile tRNA}
3250608	3252148	-	1541	46562128	Dv16SE	-	16S ribosomal RNA
3287469	3287544	-	76	46562128	DVU_tRNA-Val-3	-	^{13 Val tRNA}
3422895	3422970	-	76	46562128	DVU_tRNA-Phe-1	-	^{17 Phe tRNA}
3433963	3434038	+	76	46562128	DVU_tRNA-His-1	-	^{09 His tRNA}
3484533	3484609	-	77	46562128	DVU_tRNA-Arg-6	-	^{11 Arg tRNA}