Геном прокариот/Материалы:NC 002967

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   LOCUS       NC_002967            2843201 bp    DNA     circular BCT 26-JAN-2007
   DEFINITION  Treponema denticola ATCC 35405, complete genome.
   ACCESSION   NC_002967
   VERSION     NC_002967.9  GI:42516522
   KEYWORDS    .
   SOURCE      Treponema denticola ATCC 35405
     ORGANISM  Treponema denticola ATCC 35405
               Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.
   REFERENCE   1  (bases 1 to 2843201)
     AUTHORS   Seshadri,R., Myers,G.S., Tettelin,H., Eisen,J.A., Heidelberg,J.F.,
               Dodson,R.J., Davidsen,T.M., DeBoy,R.T., Fouts,D.E., Haft,D.H.,
               Selengut,J., Ren,Q., Brinkac,L.M., Madupu,R., Kolonay,J.,
               Durkin,S.A., Daugherty,S.C., Shetty,J., Shvartsbeyn,A.,
               Gebregeorgis,E., Geer,K., Tsegaye,G., Malek,J., Ayodeji,B.,
               Shatsman,S., McLeod,M.P., Smajs,D., Howell,J.K., Pal,S., Amin,A.,
               Vashisth,P., McNeill,T.Z., Xiang,Q., Sodergren,E., Baca,E.,
               Weinstock,G.M., Norris,S.J., Fraser,C.M. and Paulsen,I.T.
     TITLE     Comparison of the genome of the oral pathogen Treponema denticola
               with other spirochete genomes
     JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 101 (15), 5646-5651 (2004)
      PUBMED   15064399
   REFERENCE   2  (bases 1 to 2843201)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (11-SEP-2004) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2843201)
     AUTHORS   Seshadri,R., Myers,G.S., Tettelin,H., Eisen,J.A., Heidelberg,J.F.,
               Dodson,R.J., Davidsen,T.M., DeBoy,R.T., Fouts,D.E., Haft,D.H.,
               Selengut,J., Ren,Q., Brinkac,L.M., Madupu,R., Kolonay,J.F.,
               Durkin,A.S., Daugherty,S.C., Shetty,J., Shvartsbeyn,A.,
               Gebregeorgis,E., Geer,K., Tsegaye,G., Malek,J.A., Ayodeji,B.,
               Shatsman,S., McLeod,M.P., Majs,D., Howell,J.K., Pal,S., Amin,A.,
               Vashisth,P., McNeill,T.Z., Weinstock,G.M., Norris,S.J., Fraser,C.M.
               and Paulsen,I.T.
     TITLE     Direct Submission
     JOURNAL   Submitted (29-JAN-2004) The Institute for Genomic Research, 9712
               Medical Center Dr, Rockville, MD 20850, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from AE017226.
               On Feb 10, 2004 this sequence version replaced gi:41584505.
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
31732 31803 + 72 42516522 TDE_tRNA-Cys-1 - 19 Cys tRNA
246212 246562 - 351 42516522 TDE_tmRNA - 10Sa RNA
250688 250774 - 87 42516522 TDE_tRNA-Ser-1 - 08 Ser tRNA
250822 250906 - 85 42516522 TDE_tRNA-Pseudo-1 -
250948 251021 - 74 42516522 TDE_tRNA-Arg-1 - 11 Arg tRNA
251033 251119 - 87 42516522 TDE_tRNA-Pseudo-2 -
251146 251230 - 85 42516522 TDE_tRNA-Ser-2 - 08 Ser tRNA
610211 611726 + 1516 42516522 TDE_16SA - 16S ribosomal RNA
611869 611942 + 74 42516522 TDE_tRNA-Ala-1 - 02 Ala tRNA
612128 615037 + 2910 42516522 TDE_23SA - 23S ribosomal RNA
615208 615318 + 111 42516522 TDE_5SA - 5S ribosomal RNA
684725 684797 + 73 42516522 TDE_tRNA-Ala-2 - 02 Ala tRNA
884545 884626 + 82 42516522 TDE_tRNA-Leu-1 - 15 Leu tRNA
1018212 1018287 - 76 42516522 TDE_tRNA-Asn-1 - 07 Asn tRNA
1090480 1090567 + 88 42516522 TDE_tRNA-SeC(p)-1 - Sec tRNA
1202619 1202691 - 73 42516522 TDE_tRNA-Met-1 - 16 Met tRNA
1219839 1221354 + 1516 42516522 TDE_16SB - 16S ribosomal RNA
1221484 1221557 + 74 42516522 TDE_tRNA-Ile-1 - 14 Ile tRNA
1221739 1224648 + 2910 42516522 TDE_23SB - 23S ribosomal RNA
1224812 1224922 + 111 42516522 TDE_5SB - 5S ribosomal RNA
1376314 1376386 + 73 42516522 TDE_tRNA-Gln-1 - 05 Gln tRNA
1388132 1388457 + 326 42516522 TDE_rnpB - RNase P RNA component
1395627 1395699 - 73 42516522 TDE_tRNA-Met-2 - 16 Met tRNA
1551533 1551604 + 72 42516522 TDE_tRNA-Glu-1 - 04 Glu tRNA
1584328 1584402 + 75 42516522 TDE_tRNA-Thr-1 - 12 Thr tRNA
1584409 1584490 + 82 42516522 TDE_tRNA-Tyr-1 - 18 Tyr tRNA
1680012 1680084 - 73 42516522 TDE_tRNA-Thr-2 - 12 Thr tRNA
1724782 1724864 + 83 42516522 TDE_tRNA-Leu-2 - 15 Leu tRNA
1724894 1724965 + 72 42516522 TDE_tRNA-Gly-1 - 01 Gly tRNA
1789641 1789713 + 73 42516522 TDE_tRNA-Phe-1 - 17 Phe tRNA
1795537 1795619 + 83 42516522 TDE_tRNA-Leu-3 - 15 Leu tRNA
1797908 1797981 - 74 42516522 TDE_tRNA-Pro-1 - 03 Pro tRNA
1807238 1807311 + 74 42516522 TDE_tRNA-Val-1 - 13 Val tRNA
1943843 1943914 + 72 42516522 TDE_tRNA-Gly-2 - 01 Gly tRNA
1949078 1949151 - 74 42516522 TDE_tRNA-Arg-2 - 11 Arg tRNA
1960253 1960326 - 74 42516522 TDE_tRNA-Arg-3 - 11 Arg tRNA
1960359 1960430 - 72 42516522 TDE_tRNA-His-1 - 09 His tRNA
2058210 2058296 + 87 42516522 TDE_tRNA-Leu-4 - 15 Leu tRNA
2079695 2079768 + 74 42516522 TDE_tRNA-Val-2 - 13 Val tRNA
2346434 2346506 + 73 42516522 TDE_tRNA-Pro-2 - 03 Pro tRNA
2346520 2346596 + 77 42516522 TDE_tRNA-Arg-4 - 11 Arg tRNA
2354124 2354197 + 74 42516522 TDE_tRNA-Met-3 - 16 Met tRNA
2456096 2456168 - 73 42516522 TDE_tRNA-Trp-1 - 20 Trp tRNA
2456424 2456496 - 73 42516522 TDE_tRNA-Thr-3 - 12 Thr tRNA
2555330 2555402 - 73 42516522 TDE_tRNA-Lys-1 - 10 Lys tRNA
2616226 2616297 - 72 42516522 TDE_tRNA-Pro-3 - 03 Pro tRNA
2616352 2616426 - 75 42516522 TDE_tRNA-Asp-1 - 06 Asp tRNA
2623417 2623499 - 83 42516522 TDE_tRNA-Leu-5 - 15 Leu tRNA
2682138 2682210 - 73 42516522 TDE_tRNA-Lys-2 - 10 Lys tRNA
2807414 2807486 + 73 42516522 TDE_tRNA-Ala-3 - 02 Ala tRNA
2836733 2836803 + 71 42516522 TDE_tRNA-Gln-2 - 05 Gln tRNA
2836822 2836893 + 72 42516522 TDE_tRNA-Glu-2 - 04 Glu tRNA