Геном прокариот/Материалы:NC 005085

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   LOCUS       NC_005085            4751080 bp    DNA     circular BCT 22-JUN-2007
   DEFINITION  Chromobacterium violaceum ATCC 12472, complete genome.
   ACCESSION   NC_005085
   VERSION     NC_005085.1  GI:34495455
   KEYWORDS    .
   SOURCE      Chromobacterium violaceum ATCC 12472
     ORGANISM  Chromobacterium violaceum ATCC 12472
               Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales;
               Neisseriaceae; Chromobacterium.
   REFERENCE   1  (bases 1 to 4751080)
     AUTHORS   Vasconcelos,A.T.R., de Almeida,D.F., Almeida,F.C., de
               Almeida,L.G.P., de Almeida,R., Goncalves,J.A.A., Andrade,E.M.,
               Antonio,R.V., Araripe,J., de Araujo,M.F.F., Filho,S.A., Azevedo,V.,
               Batista,A.J., Bataus,L.A.M., Batista,J.S., Belo,A., vander Berg,C.,
               Blamey,J., Bogo,M., Bonato,S., Bordignon,J., Brito,C.A.,
               Brocchi,M., Burity,H.A., Camargo,A.A., Cardoso,D.D.P.,
               Carneiro,N.P., Carraro,D.M., Carvalho,C.M.B., Cascardo,J.C.M.,
               Cavada,B.S., Chueire,L.M.O., Pasa,T.B.C., Duran,N., Fagundes,N.,
               Falcao,C.L., Fantinatti,F., Farias,I.P., Felipe,M.S.S.,
               Ferrari,L.P., Ferro,J.A., Ferro,M.I.T., Franco,G.R.,
               Freitas,N.S.A., Furlan,L.R., Gazzinelli,R.T., Gomes,E.A.,
               Goncalves,P.R., Grangeiro,T.B., Grattapaglia,D., Grisard,E.C.,
               Guimaraes,C.T., Hanna,E.S., Hungria,M., Jardim,S.N., Laurino,J.,
               Leoi,L.C.T., Fassarella,L., Lima,A., Loureiro,M.F., Lyra,M.C.P.,
               Macedo,M., Madeira,H.M.F., Manfio,G.P., Maranhao,A.Q.,
               Martins,W.S., di Mauro,S.M.Z., de Medeiros,S.R.B., Meissner,R.D.V.,
               Menck,C.F.M., Moreira,M.A.M., Nascimento,F.F., Nicolas,M.F.,
               Oliveira,J.G., Oliveira,S.C., Paixao,R.F.C., Parente,J.A.,
               Pedrosa,F.O., Pena,S.J.D., Perreira,J.O., Perreira,M.,
               Pinto,L.S.R.C., Pinto,L.S., Porto,J.I.R., Potrich,D.P.,
               Neto,C.E.R., Reis,A.M.M., Rigo,L.U., Rondinelli,E., dos
               Santos,E.B.P., Santos,F.R., Schneider,M.P.C., Seuanez,H.N.,
               Silva,A.M.R., da Silva,A.L.C., Silva,D.W., Silva,R., Simoes,I.C.,
               Simon,D., Soares,C.M.A., Soares,R.B.A., Souza,E.M., Souza,K.R.L.,
               Souza,R.C., Steffens,M.B.R., Steindel,M., Teixeira,S.R.,
               Urmenyi,T., Vettore,A., Wassem,R., Zaha,A. and Simpson,A.J.G.
     TITLE     The complete genome sequence of Chromobacterium violaceum reveals
               remarkable and exploitable bacterial adaptability
     JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 100 (20), 11660-11665 (2003)
      PUBMED   14500782
   REFERENCE   2  (bases 1 to 4751080)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (11-SEP-2004) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4751080)
     AUTHORS   Vasconcelos,A.T.R., de Almeida,D.F., Almeida,F.C., de
               Almeida,L.G.P., de Almeida,R., Goncalves,J.A.A., Andrade,E.M.,
               Antonio,R.V., Araripe,J., de Araujo,M.F.F., Filho,S.A., Azevedo,V.,
               Batista,A.J., Bataus,L.A.M., Batista,J.S., Belo,A., vander Berg,C.,
               Blamey,J., Bogo,M., Bonato,S., Bordignon,J., Brito,C.A.,
               Brocchi,M., Burity,H.A., Camargo,A.A., Cardoso,D.D.P.,
               Carneiro,N.P., Carraro,D.M., Carvalho,C.M.B., Cascardo,J.C.M.,
               Cavada,B.S., Chueire,L.M.O., Pasa,T.B.C., Duran,N., Fagundes,N.,
               Falcao,C.L., Fantinatti,F., Farias,I.P., Felipe,M.S.S.,
               Ferrari,L.P., Ferro,J.A., Ferro,M.I.T., Franco,G.R.,
               Freitas,N.S.A., Furlan,L.R., Gazzinelli,R.T., Gomes,E.A.,
               Goncalves,P.R., Grangeiro,T.B., Grattapaglia,D., Grisard,E.C.,
               Guimaraes,C.T., Hanna,E.S., Hungria,M., Jardim,S.N., Laurino,J.,
               Leoi,L.C.T., Fassarella,L., Lima,A., Loureiro,M.F., Lyra,M.C.P.,
               Macedo,M., Madeira,H.M.F., Manfio,G.P., Maranhao,A.Q.,
               Martins,W.S., di Mauro,S.M.Z., de Medeiros,S.R.B., Meissner,R.D.V.,
               Menck,C.F.M., Moreira,M.A.M., Nascimento,F.F., Nicolas,M.F.,
               Oliveira,J.G., Oliveira,S.C., Paixao,R.F.C., Parente,J.A.,
               Pedrosa,F.O., Pena,S.J.D., Perreira,J.O., Perreira,M.,
               Pinto,L.S.R.C., Pinto,L.S., Porto,J.I.R., Potrich,D.P.,
               Neto,C.E.R., Reis,A.M.M., Rigo,L.U., Rondinelli,E., dos
               Santos,E.B.P., Santos,F.R., Schneider,M.P.C., Seuanez,H.N.,
               Silva,A.M.R., da Silva,A.L.C., Silva,D.W., Silva,R., Simoes,I.C.,
               Simon,D., Soares,C.M.A., Soares,R.B.A., Souza,E.M., Souza,K.R.L.,
               Souza,R.C., Steffens,M.B.R., Steindel,M., Teixeira,S.R.,
               Urmenyi,T., Vettore,A., Wassem,R., Zaha,A. and Simpson,A.J.G.
     TITLE     Direct Submission
     JOURNAL   Submitted (22-JAN-2003) Labinfo, LNCC - Laboratorio Nacional de
               Computacao Cientifica, Rua Getulio Vargas 333, Petropolis, RJ
               25651070, Brazil
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from AE016825.
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
421225 422698 + 1474 34495455 CV_rRNA16s1 - 16S ribosomal RNA
422942 423018 + 77 34495455 CV_tRNAIleGAT1 - 14 Ile tRNA
423105 423180 + 76 34495455 CV_tRNAAlaTGC1 - 02 Ala tRNA
423379 426318 + 2940 34495455 CV_rRNA23s1 - 23S ribosomal RNA
426319 426561 + 243 34495455 CV_rRNA5s1 - 5S ribosomal RNA
502190 503663 + 1474 34495455 CV_rRNA16s2 - 16S ribosomal RNA
503807 503883 + 77 34495455 CV_tRNAIleGAT2 - 14 Ile tRNA
503896 503971 + 76 34495455 CV_tRNAAlaTGC2 - 02 Ala tRNA
504171 507110 + 2940 34495455 CV_rRNA23s2 - 23S ribosomal RNA
507111 507350 + 240 34495455 CV_rRNA5s2 - 5S ribosomal RNA
682034 682118 - 85 34495455 CV_tRNALeuCAA - 15 Leu tRNA
759824 759908 + 85 34495455 CV_tRNATyrGTA1 - 18 Tyr tRNA
878775 878849 - 75 34495455 CV_tRNAArgCCT - 11 Arg tRNA
955155 955230 + 76 34495455 CV_tRNAAlaCGC - 02 Ala tRNA
975612 975696 + 85 34495455 CV_tRNALeuGAG - 15 Leu tRNA
1006822 1006897 + 76 34495455 CV_tRNAPheGAA1 - 17 Phe tRNA
1006904 1006979 + 76 34495455 CV_tRNAPheGAA2 - 17 Phe tRNA
1058518 1058611 + 94 34495455 CV_tRNASerGCT - 08 Ser tRNA
1058618 1058694 + 77 34495455 CV_tRNAArgACG1 - 11 Arg tRNA
1058698 1058772 + 75 34495455 CV_tRNAGluTTC1 - 04 Glu tRNA
1061741 1061815 - 75 34495455 CV_tRNAGluTTC2 - 04 Glu tRNA
1061819 1061895 - 77 34495455 CV_tRNAArgACG2 - 11 Arg tRNA
1061903 1061977 - 75 34495455 CV_tRNAGluTTC3 - 04 Glu tRNA
1061983 1062059 - 77 34495455 CV_tRNAArgACG3 - 11 Arg tRNA
1154028 1155501 + 1474 34495455 CV_rRNA16s3 - 16S ribosomal RNA
1155745 1155821 + 77 34495455 CV_tRNAIleGAT3 - 14 Ile tRNA
1155908 1155983 + 76 34495455 CV_tRNAAlaTGC3 - 02 Ala tRNA
1156183 1159122 + 2940 34495455 CV_rRNA23s3 - 23S ribosomal RNA
1159123 1159362 + 240 34495455 CV_rRNA5s3 - 5S ribosomal RNA
1263556 1263645 - 90 34495455 CV_tRNASerCGA - 08 Ser tRNA
1273710 1273786 + 77 34495455 CV_tRNAMetCAT1 - 16 Met tRNA
1377435 1377510 + 76 34495455 CV_tRNAGlyGCC1 - 01 Gly tRNA
1377534 1377609 + 76 34495455 CV_tRNAGlyGCC2 - 01 Gly tRNA
1377632 1377707 + 76 34495455 CV_tRNAGlyGCC3 - 01 Gly tRNA
1377732 1377807 + 76 34495455 CV_tRNAGlyGCC4 - 01 Gly tRNA
1377837 1377912 + 76 34495455 CV_tRNAGlyGCC5 - 01 Gly tRNA
1377958 1378031 + 74 34495455 CV_tRNACysGCA - 19 Cys tRNA
1387010 1387094 + 85 34495455 CV_tRNALeuTAA - 15 Leu tRNA
1420085 1420161 + 77 34495455 CV_tRNAValGAC - 13 Val tRNA
1427771 1427847 + 77 34495455 CV_tRNAProGGG - 03 Pro tRNA
1433244 1433319 - 76 34495455 CV_tRNAAsnGTT1 - 07 Asn tRNA
1433352 1433427 - 76 34495455 CV_tRNAAsnGTT2 - 07 Asn tRNA
1433459 1433534 - 76 34495455 CV_tRNAAsnGTT3 - 07 Asn tRNA
1646829 1648302 + 1474 34495455 CV_rRNA16s4 - 16S ribosomal RNA
1648546 1648622 + 77 34495455 CV_tRNAIleGAT4 - 14 Ile tRNA
1648709 1648784 + 76 34495455 CV_tRNAAlaTGC4 - 02 Ala tRNA
1648983 1651922 + 2940 34495455 CV_rRNA23s4 - 23S ribosomal RNA
1651923 1652162 + 240 34495455 CV_rRNA5s4 - 5S ribosomal RNA
1652253 1652371 + 119 34495455 CV_r01 - 5S ribosomal RNA
1746117 1746207 + 91 34495455 CV_tRNASerGGA1 - 08 Ser tRNA
1746261 1746351 + 91 34495455 CV_tRNASerGGA2 - 08 Ser tRNA
1978844 1978919 + 76 34495455 CV_tRNAAsnGTT4 - 07 Asn tRNA
2094372 2094447 - 76 34495455 CV_tRNAHisGTG1 - 09 His tRNA
2094474 2094549 - 76 34495455 CV_tRNAHisGTG2 - 09 His tRNA
2094595 2094670 - 76 34495455 CV_tRNAHisGTG3 - 09 His tRNA
2094698 2094774 - 77 34495455 CV_tRNAArgTCT - 11 Arg tRNA
2094793 2094869 - 77 34495455 CV_tRNAProTGG - 03 Pro tRNA
2511625 2511712 - 88 34495455 CV_tRNASerTGA - 08 Ser tRNA
2747299 2747375 - 77 34495455 CV_tRNAAspGTC1 - 06 Asp tRNA
2747383 2747458 - 76 34495455 CV_tRNAValTAC1 - 13 Val tRNA
2853221 2853305 + 85 34495455 CV_tRNALeuTAG - 15 Leu tRNA
3187082 3187157 + 76 34495455 CV_tRNAThrTGT - 12 Thr tRNA
3257362 3257437 + 76 34495455 CV_tRNAAlaGGC1 - 02 Ala tRNA
3262246 3262321 + 76 34495455 CV_tRNAAlaGGC2 - 02 Ala tRNA
3262330 3262405 + 76 34495455 CV_tRNAGluTTC4 - 04 Glu tRNA
3262417 3262492 + 76 34495455 CV_tRNAAlaGGC3 - 02 Ala tRNA
3371481 3371720 - 240 34495455 CV_rRNA5s5 - 5S ribosomal RNA
3371721 3374660 - 2940 34495455 CV_rRNA23s5 - 23S ribosomal RNA
3374860 3374935 - 76 34495455 CV_tRNAAlaTGC5 - 02 Ala tRNA
3374948 3375024 - 77 34495455 CV_tRNAIleGAT5 - 14 Ile tRNA
3375168 3376641 - 1474 34495455 CV_rRNA16s5 - 16S ribosomal RNA
3472822 3472897 + 76 34495455 CV_tRNAValTAC2 - 13 Val tRNA
3472910 3472986 + 77 34495455 CV_tRNAAspGTC2 - 06 Asp tRNA
3473013 3473088 + 76 34495455 CV_tRNAValTAC3 - 13 Val tRNA
3473101 3473177 + 77 34495455 CV_tRNAAspGTC3 - 06 Asp tRNA
3473204 3473279 + 76 34495455 CV_tRNAValTAC4 - 13 Val tRNA
3473292 3473368 + 77 34495455 CV_tRNAAspGTC4 - 06 Asp tRNA
3473395 3473470 + 76 34495455 CV_tRNAValTAC5 - 13 Val tRNA
3473483 3473559 + 77 34495455 CV_tRNAAspGTC5 - 06 Asp tRNA
3473587 3473663 + 77 34495455 CV_tRNAValCAC1 - 13 Val tRNA
3473670 3473746 + 77 34495455 CV_tRNAAspGTC6 - 06 Asp tRNA
3473774 3473850 + 77 34495455 CV_tRNAValCAC2 - 13 Val tRNA
3473857 3473933 + 77 34495455 CV_tRNAAspGTC7 - 06 Asp tRNA
3622292 3622365 + 74 34495455 CV_tRNAGlyCCC - 01 Gly tRNA
3820123 3820362 - 240 34495455 CV_rRNA5s6 - 5S ribosomal RNA
3820363 3823302 - 2940 34495455 CV_rRNA23s6 - 23S ribosomal RNA
3823501 3823576 - 76 34495455 CV_tRNAAlaTGC6 - 02 Ala tRNA
3823663 3823739 - 77 34495455 CV_tRNAIleGAT6 - 14 Ile tRNA
3823983 3825456 - 1474 34495455 CV_rRNA16s6 - 16S ribosomal RNA
3828836 3828922 + 87 34495455 CV_tRNALeuCAG1 - 15 Leu tRNA
3828974 3829060 + 87 34495455 CV_tRNALeuCAG2 - 15 Leu tRNA
3829094 3829180 + 87 34495455 CV_tRNALeuCAG3 - 15 Leu tRNA
3829238 3829324 + 87 34495455 CV_tRNALeuCAG4 - 15 Leu tRNA
3854547 3854622 - 76 34495455 CV_tRNAGlnTTG1 - 05 Gln tRNA
3855180 3855255 - 76 34495455 CV_tRNAThrCGT - 12 Thr tRNA
3855317 3855393 - 77 34495455 CV_tRNAProCGG1 - 03 Pro tRNA
3855472 3855548 - 77 34495455 CV_tRNAProCGG2 - 03 Pro tRNA
4059834 4059912 - 79 34495455 CV_tRNAMetCAT2 - 16 Met tRNA
4244594 4244833 - 240 34495455 CV_rRNA5s7 - 5S ribosomal RNA
4244834 4247773 - 2940 34495455 CV_rRNA23s7 - 23S ribosomal RNA
4247972 4248047 - 76 34495455 CV_tRNAAlaTGC7 - 02 Ala tRNA
4248134 4248210 - 77 34495455 CV_tRNAIleGAT7 - 14 Ile tRNA
4248454 4249927 - 1474 34495455 CV_rRNA16s7 - 16S ribosomal RNA
4325718 4325794 - 77 34495455 CV_tRNAMetCAT3 - 16 Met tRNA
4389268 4389342 - 75 34495455 CV_tRNAGlnTTG2 - 05 Gln tRNA
4402077 4402153 + 77 34495455 CV_tRNAArgCCG - 11 Arg tRNA
4434133 4434372 - 240 34495455 CV_rRNA5s8 - 5S ribosomal RNA
4434373 4437312 - 2940 34495455 CV_rRNA23s8 - 23S ribosomal RNA
4437511 4437586 - 76 34495455 CV_tRNAAlaTGC8 - 02 Ala tRNA
4437673 4437749 - 77 34495455 CV_tRNAIleGAT8 - 14 Ile tRNA
4437993 4439466 - 1474 34495455 CV_rRNA16s8 - 16S ribosomal RNA
4474196 4474272 + 77 34495455 CV_tRNAMetCAT4 - 16 Met tRNA
4474308 4474384 + 77 34495455 CV_tRNAMetCAT5 - 16 Met tRNA
4529616 4529690 - 75 34495455 CV_tRNAThrGGT1 - 12 Thr tRNA
4532053 4532128 - 76 34495455 CV_tRNATrpCCA - 20 Trp tRNA
4533370 4533444 - 75 34495455 CV_tRNAThrGGT2 - 12 Thr tRNA
4533469 4533542 - 74 34495455 CV_tRNAGlyTCC - 01 Gly tRNA
4533595 4533679 - 85 34495455 CV_tRNATyrGTA2 - 18 Tyr tRNA
4586712 4586787 - 76 34495455 CV_tRNALysTTT1 - 10 Lys tRNA
4586826 4586901 - 76 34495455 CV_tRNALysCTT1 - 10 Lys tRNA
4586937 4587012 - 76 34495455 CV_tRNALysTTT2 - 10 Lys tRNA
4587041 4587116 - 76 34495455 CV_tRNALysCTT2 - 10 Lys tRNA
4587154 4587229 - 76 34495455 CV_tRNALysTTT3 - 10 Lys tRNA