Геном прокариот/Материалы:NC 005296

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_005296            5459213 bp    DNA     circular BCT 30-MAY-2006
   DEFINITION  Rhodopseudomonas palustris CGA009, complete genome.
   ACCESSION   NC_005296
   VERSION     NC_005296.1  GI:39933080
   KEYWORDS    complete genomes.
   SOURCE      Rhodopseudomonas palustris CGA009
     ORGANISM  Rhodopseudomonas palustris CGA009
               Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
               Bradyrhizobiaceae; Rhodopseudomonas.
   REFERENCE   1  (bases 1 to 5459213)
     AUTHORS   Larimer,F.W., Chain,P., Hauser,L., Lamerdin,J., Malfatti,S., Do,L.,
               Land,M.L., Pelletier,D.A., Beatty,J.T., Lang,A.S., Tabita,F.R.,
               Gibson,J.L., Hanson,T.E., Bobst,C., Torres,J.L., Peres,C.,
               Harrison,F.H., Gibson,J. and Harwood,C.S.
     TITLE     Complete genome sequence of the metabolically versatile
               photosynthetic bacterium Rhodopseudomonas palustris
     JOURNAL   Nat. Biotechnol. 22 (1), 55-61 (2004)
      PUBMED   14704707
   REFERENCE   2  (bases 1 to 5459213)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (11-SEP-2004) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5459213)
     CONSRTM   NCBI Microbial Genomes Annotation Project
     TITLE     Direct Submission
     JOURNAL   Submitted (24-JUL-2003) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from BX571963.
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
52242	52326	+	85	39933080	RNA_3	-	^{15 Leu tRNA}
66510	66585	-	76	39933080	RNA_41	-	^{02 Ala tRNA}
175721	175810	-	90	39933080	RNA_40	-	^{08 Ser tRNA}
284219	284294	+	76	39933080	RNA_4	-	^{12 Thr tRNA}
295291	295365	-	75	39933080	RNA_39	-	^{01 Gly tRNA}
399949	400023	+	75	39933080	RNA_5	-	^{04 Glu tRNA}
458356	458431	+	76	39933080	RNA_6	-	^{02 Ala tRNA}
526626	526702	-	77	39933080	RNA_38	-	^{11 Arg tRNA}
604599	604683	-	85	39933080	RNA_37	-	^{15 Leu tRNA}
682366	682468	+	103	39933080	RNA_60	-	signal recognition particle 4.5 S RNA
702780	702856	+	77	39933080	RNA_7	-	^{11 Arg tRNA}
858392	858468	+	77	39933080	RNA_8	-	^{11 Arg tRNA}
1009620	1009694	+	75	39933080	RNA_9	-	^{13 Val tRNA}
1061293	1061367	+	75	39933080	RNA_10	-	^{05 Gln tRNA}
1189709	1189785	+	77	39933080	RNA_11	-	^{03 Pro tRNA}
1428260	1428336	+	77	39933080	RNA_12	-	^{16 Met tRNA}
1802489	1802563	-	75	39933080	RNA_36	-	^{13 Val tRNA}
1824830	1824905	+	76	39933080	RNA_13	-	^{16 Met tRNA}
1884001	1884077	+	77	39933080	RNA_14	-	^{16 Met tRNA}
2309175	2309250	+	76	39933080	RNA_15	-	^{10 Lys tRNA}
2728479	2728568	-	90	39933080	RNA_35	-	^{08 Ser tRNA}
2744879	2744972	-	94	39933080	RNA_34	-	^{08 Ser tRNA}
2862480	2862554	-	75	39933080	RNA_33	-	^{04 Glu tRNA}
2866851	2866927	+	77	39933080	RNA_16	-	^{03 Pro tRNA}
2893816	2893892	-	77	39933080	RNA_32	-	^{11 Arg tRNA}
2929967	2930040	-	74	39933080	RNA_31	-	^{19 Cys tRNA}
2933792	2933866	-	75	39933080	RNA_30	-	^{07 Asn tRNA}
3018453	3018528	-	76	39933080	RNA_29	-	^{10 Lys tRNA}
3114233	3114310	+	78	39933080	RNA_17	-	^{03 Pro tRNA}
3338329	3338405	-	77	39933080	RNA_28	-	^{06 Asp tRNA}
3345173	3345249	+	77	39933080	RNA_18	-	^{13 Val tRNA}
3356438	3356522	-	85	39933080	RNA_27	-	^{15 Leu tRNA}
3574656	3574740	-	85	39933080	RNA_26	-	^{15 Leu tRNA}
3591387	3591463	+	77	39933080	RNA_19	-	^{11 Arg tRNA}
3701564	3701639	-	76	39933080	RNA_25	-	^{20 Trp tRNA}
3729414	3729487	-	74	39933080	RNA_24	-	^{01 Gly tRNA}
3807111	3807196	-	86	39933080	RNA_23	-	^{18 Tyr tRNA}
3809553	3809627	+	75	39933080	RNA_20	-	^{12 Thr tRNA}
3879766	3879854	-	89	39933080	RNA_22	-	^{15 Leu tRNA}
3934358	3934431	+	74	39933080	RNA_21	-	^{05 Gln tRNA}
3948454	3948784	+	331	39933080	RNA_56	-	tmRNA
4004668	4005137	+	470	39933080	RNA_59	-	Ribonuclease P RNA
4608449	4608523	+	75	39933080	RNA_1	-	Xaa tRNA
4678879	4678955	-	77	39933080	RNA_49	-	^{09 His tRNA}
4991995	4998356	-	6362	39933080	RNA_57	-	RrnB
4992384	4992504	-	121	39933080	RNA_50	-	5S ribosomal RNA
4992581	4995470	-	2890	39933080	RNA_51	-	23S ribosomal RNA
4995815	4995890	-	76	39933080	RNA_48	-	^{02 Ala tRNA}
4995924	4996000	-	77	39933080	RNA_47	-	^{14 Ile tRNA}
4996218	4997699	-	1482	39933080	RNA_52	-	16S ribosomal RNA
5107941	5108016	-	76	39933080	RNA_46	-	^{17 Phe tRNA}
5118650	5118724	+	75	39933080	RNA_2	-	^{12 Thr tRNA}
5246084	5252077	-	5994	39933080	RNA_58	-
5246149	5246269	-	121	39933080	RNA_53	-	5S ribosomal RNA
5246346	5249235	-	2890	39933080	RNA_54	-	23S ribosomal RNA
5249580	5249655	-	76	39933080	RNA_45	-	^{02 Ala tRNA}
5249689	5249765	-	77	39933080	RNA_44	-	^{14 Ile tRNA}
5249983	5251464	-	1482	39933080	RNA_55	-	16S ribosomal RNA
5252330	5252419	-	90	39933080	RNA_43	-	^{08 Ser tRNA}
5374719	5374792	-	74	39933080	RNA_42	-	^{01 Gly tRNA}