Геном прокариот/Материалы:NC 005945

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_005945            5228663 bp    DNA     circular BCT 03-APR-2006
   DEFINITION  Bacillus anthracis str. Sterne, complete genome.
   ACCESSION   NC_005945
   VERSION     NC_005945.1  GI:49183039
   KEYWORDS    .
   SOURCE      Bacillus anthracis str. Sterne
     ORGANISM  Bacillus anthracis str. Sterne
               Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus; Bacillus
               cereus group.
   REFERENCE   1  (bases 1 to 5228663)
     AUTHORS   Brettin,T.S., Bruce,D., Challacombe,J.F., Gilna,P., Han,C.,
               Hill,K., Hitchcock,P., Jackson,P., Keim,P., Longmire,J., Lucas,S.,
               Okinaka,R., Richardson,P., Rubin,E. and Tice,H.
     TITLE     Complete genome sequence of Bacillus anthracis Sterne
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5228663)
     AUTHORS   .
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (11-SEP-2004) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5228663)
     AUTHORS   Brettin,T.S., Bruce,D., Challacombe,J.F., Gilna,P., Han,C.,
               Hill,K., Hitchcock,P., Jackson,P., Keim,P., Longmire,J., Lucas,S.,
               Okinaka,R., Richardson,P., Rubin,E. and Tice,H.
     TITLE     Direct Submission
     JOURNAL   Submitted (12-JAN-2004) Joint Genome Institute, Department of
               Energy, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from AE017225.
               The Sterne strain of Bacillus anthracis is lacking the plasmid
               pXO2, resulting in an avirulent phenotype that maintains the main
               anthrax toxin. Prevention of anthrax in cattle can be accomplished
               by vaccination with living spores of the Sterne strain.  Most
               livestock vaccines in use throughout the world are derivatives of
               the live spore vaccine formulated by Sterne in 1937 and still use
               descendants of his strain 34F2 (Anthrax: the disease in relation to
               vaccines. Hambleton, P, Carnabm J, and Melling J. Vaccine 1984
               2:125-132 and Anthrax vaccines: past, present and future. Turnbull,
               PC. Vaccine 1991 9(8):533-539).   Plasmid and fosmid libraries were
               prepared at the Joint Genome Institute in Los Alamos (JGI-LANL),
               NM. Shotgun sequencing was performed at the JGI Production Genomics
               Facility (JGI-PGF) in Walnut Creek, CA. to a coverage of 16x.
               Finishing was performed at JGI-LANL starting with 39 contigs and 15
               scaffolds. Repetitive regions were identified, assembled and
               finished individually using a local software package called RepFin.
               Twenty four gaps were closed with primer walks and 15 by PCR. Gene
               predictions were performed using Glimmer and tRNAs were identified
               using tRNAScan-SE. Basic analysis of the gene predictions was
               performed by searching the coding sequence against the PFam,
               BLOCKS, and Prodom databases. For the most part, gene definitions
               were transferred directly from the TIGR Bacillus anthracis Ames
               GenBank records using a bi-directional best hit mapping between the
               two genomes. A total of 5415 features have been annotated on the
               sequence record.
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
9336	10845	+	1510	49183039	rRNA-16s-1	-	16S ribosomal RNA
10993	11072	+	80	49183039	tRNA-Ile-2	-	^{14 Ile tRNA}
11078	11156	+	79	49183039	tRNA-Ala-2	-	^{02 Ala tRNA}
11248	14158	+	2911	49183039	rRNA-23s-1	-	23S ribosomal RNA
14204	14322	+	119	49183039	rRNA-5s-1	-	5S ribosomal RNA
21770	21865	+	96	49183039	tRNA-Ser-1	-	^{08 Ser tRNA}
29130	30639	+	1510	49183039	rRNA-16s-2	-	16S ribosomal RNA
30787	30866	+	80	49183039	tRNA-Ile-4	-	^{14 Ile tRNA}
30872	30950	+	79	49183039	tRNA-Ala-4	-	^{02 Ala tRNA}
31042	33952	+	2911	49183039	rRNA-23s-2	-	23S ribosomal RNA
33998	34116	+	119	49183039	rRNA-5s-2	-	5S ribosomal RNA
64426	64502	+	77	49183039	tRNA-Met-6	-	^{16 Met tRNA}
64513	64587	+	75	49183039	tRNA-Glu-5	-	^{04 Glu tRNA}
82452	83961	+	1510	49183039	rRNA-16s-3	-	16S ribosomal RNA
84197	87047	+	2851	49183039	rRNA-23s-3	-	23S ribosomal RNA
87094	87212	+	119	49183039	rRNA-5s-3	-	5S ribosomal RNA
145516	147025	+	1510	49183039	rRNA-16s-4	-	16S ribosomal RNA
147201	150111	+	2911	49183039	rRNA-23s-4	-	23S ribosomal RNA
150195	150313	+	119	49183039	rRNA-5s-4	-	5S ribosomal RNA
150320	150397	+	78	49183039	tRNA-Asn-4	-	^{07 Asn tRNA}
150399	150474	+	76	49183039	tRNA-Thr-5	-	^{12 Thr tRNA}
150496	150573	+	78	49183039	tRNA-Glu-4	-	^{04 Glu tRNA}
150576	150654	+	79	49183039	tRNA-Val-5	-	^{13 Val tRNA}
150669	150755	+	87	49183039	tRNA-Tyr-2	-	^{18 Tyr tRNA}
150818	150895	+	78	49183039	tRNA-Gln-4	-	^{05 Gln tRNA}
150898	150976	+	79	49183039	tRNA-Lys-4	-	^{10 Lys tRNA}
150979	151053	+	75	49183039	tRNA-Gly-3	-	^{01 Gly tRNA}
151061	151136	+	76	49183039	tRNA-Ala-1	-	^{02 Ala tRNA}
245022	245099	+	78	49183039	tRNA-Asn-1	-	^{07 Asn tRNA}
245100	245193	+	94	49183039	tRNA-Ser-7	-	^{08 Ser tRNA}
245199	245276	+	78	49183039	tRNA-Glu-7	-	^{04 Glu tRNA}
245278	245356	+	79	49183039	tRNA-Val-3	-	^{13 Val tRNA}
245400	245478	+	79	49183039	tRNA-Asp-3	-	^{06 Asp tRNA}
245564	245641	+	78	49183039	tRNA-Gln-2	-	^{05 Gln tRNA}
245644	245719	+	76	49183039	tRNA-Lys-2	-	^{10 Lys tRNA}
245734	245822	+	89	49183039	tRNA-Leu-4	-	^{15 Leu tRNA}
245915	245994	+	80	49183039	tRNA-Arg-2	-	^{11 Arg tRNA}
245996	246075	+	80	49183039	tRNA-Pro-1	-	^{03 Pro tRNA}
246074	246147	+	74	49183039	tRNA-Gly-6	-	^{01 Gly tRNA}
246248	247757	+	1510	49183039	rRNA-16s-5	-	16S ribosomal RNA
247933	250843	+	2911	49183039	rRNA-23s-5	-	23S ribosomal RNA
250890	251008	+	119	49183039	rRNA-5s-5	-	5S ribosomal RNA
251018	251097	+	80	49183039	tRNA-Met-7	-	^{16 Met tRNA}
251098	251176	+	79	49183039	tRNA-Asp-4	-	^{06 Asp tRNA}
266827	268336	+	1510	49183039	rRNA-16s-6	-	16S ribosomal RNA
268512	271422	+	2911	49183039	rRNA-23s-6	-	23S ribosomal RNA
271469	271587	+	119	49183039	rRNA-5s-6	-	5S ribosomal RNA
280125	281634	+	1510	49183039	rRNA-16s-7	-	16S ribosomal RNA
281810	284720	+	2911	49183039	rRNA-23s-7	-	23S ribosomal RNA
284768	284886	+	119	49183039	rRNA-5s-7	-	5S ribosomal RNA
290098	291607	+	1510	49183039	rRNA-16s-8	-	16S ribosomal RNA
291783	294693	+	2911	49183039	rRNA-23s-8	-	23S ribosomal RNA
294741	294859	+	119	49183039	rRNA-5s-8	-	5S ribosomal RNA
532506	534014	+	1509	49183039	rRNA-16s-9	-	16S ribosomal RNA
534183	537093	+	2911	49183039	rRNA-23s-9	-	23S ribosomal RNA
537191	537309	+	119	49183039	rRNA-5s-9	-	5S ribosomal RNA
537315	537392	+	78	49183039	tRNA-Asn-5	-	^{07 Asn tRNA}
537392	537486	+	95	49183039	tRNA-Ser-6	-	^{08 Ser tRNA}
537501	537578	+	78	49183039	tRNA-Glu-2	-	^{04 Glu tRNA}
537581	537659	+	79	49183039	tRNA-Val-6	-	^{13 Val tRNA}
537681	537760	+	80	49183039	tRNA-Met-3	-	^{16 Met tRNA}
537761	537839	+	79	49183039	tRNA-Asp-6	-	^{06 Asp tRNA}
537846	537924	+	79	49183039	tRNA-Phe-4	-	^{17 Phe tRNA}
537940	538018	+	79	49183039	tRNA-Thr-4	-	^{12 Thr tRNA}
538026	538112	+	87	49183039	tRNA-Tyr-1	-	^{18 Tyr tRNA}
538117	538193	+	77	49183039	tRNA-Trp-2	-	^{20 Trp tRNA}
538210	538288	+	79	49183039	tRNA-His-2	-	^{09 His tRNA}
538349	538426	+	78	49183039	tRNA-Gln-1	-	^{05 Gln tRNA}
538429	538506	+	78	49183039	tRNA-Gly-8	-	^{01 Gly tRNA}
538518	538591	+	74	49183039	tRNA-Cys-1	-	^{19 Cys tRNA}
538599	538686	+	88	49183039	tRNA-Leu-5	-	^{15 Leu tRNA}
543114	543190	+	77	49183039	tRNA-Gly-1	-	^{01 Gly tRNA}
741460	742969	+	1510	49183039	rRNA-16s-10	-	16S ribosomal RNA
743145	746055	+	2911	49183039	rRNA-23s-10	-	23S ribosomal RNA
746154	746272	+	119	49183039	rRNA-5s-10	-	5S ribosomal RNA
746275	746353	+	79	49183039	tRNA-Val-4	-	^{13 Val tRNA}
746362	746439	+	78	49183039	tRNA-Gln-3	-	^{05 Gln tRNA}
746441	746519	+	79	49183039	tRNA-Lys-1	-	^{10 Lys tRNA}
746531	746614	+	84	49183039	tRNA-Leu-3	-	^{15 Leu tRNA}
746641	746718	+	78	49183039	tRNA-Gly-5	-	^{01 Gly tRNA}
746732	746823	+	92	49183039	tRNA-Leu-1	-	^{15 Leu tRNA}
746824	746900	+	77	49183039	tRNA-Arg-3	-	^{11 Arg tRNA}
746908	746984	+	77	49183039	tRNA-Pro-2	-	^{03 Pro tRNA}
746998	747073	+	76	49183039	tRNA-Ala-3	-	^{02 Ala tRNA}
747091	747186	+	96	49183039	tRNA-Ser-2	-	^{08 Ser tRNA}
747238	747333	+	96	49183039	tRNA-Ser-5	-	^{08 Ser tRNA}
747351	747430	+	80	49183039	tRNA-Met-2	-	^{16 Met tRNA}
747432	747510	+	79	49183039	tRNA-Asp-5	-	^{06 Asp tRNA}
747516	747594	+	79	49183039	tRNA-Phe-3	-	^{17 Phe tRNA}
747601	747676	+	76	49183039	tRNA-Thr-1	-	^{12 Thr tRNA}
747680	747753	+	74	49183039	tRNA-Trp-1	-	^{20 Trp tRNA}
747761	747840	+	80	49183039	tRNA-Ile-3	-	^{14 Ile tRNA}
747846	747923	+	78	49183039	tRNA-Asn-2	-	^{07 Asn tRNA}
747922	747996	+	75	49183039	tRNA-Glu-3	-	^{04 Glu tRNA}
1232543	1232618	-	76	49183039	tRNA-Val-1	-	^{13 Val tRNA}
4095081	4095157	-	77	49183039	tRNA-Met-8	-	^{16 Met tRNA}
4287997	4288076	-	80	49183039	tRNA-Arg-5	-	^{11 Arg tRNA}
4288075	4288151	-	77	49183039	tRNA-Gly-2	-	^{01 Gly tRNA}
4651159	4651233	-	75	49183039	tRNA-Glu-6	-	^{04 Glu tRNA}
4651237	4651330	-	94	49183039	tRNA-Ser-4	-	^{08 Ser tRNA}
4651335	4651412	-	78	49183039	tRNA-Asn-3	-	^{07 Asn tRNA}
4651417	4651496	-	80	49183039	tRNA-Ile-1	-	^{14 Ile tRNA}
4651504	4651577	-	74	49183039	tRNA-Gly-7	-	^{01 Gly tRNA}
4651588	4651666	-	79	49183039	tRNA-Lys-3	-	^{10 Lys tRNA}
4651674	4651752	-	79	49183039	tRNA-Thr-3	-	^{12 Thr tRNA}
4651764	4651842	-	79	49183039	tRNA-Phe-1	-	^{17 Phe tRNA}
4651852	4651930	-	79	49183039	tRNA-Asp-1	-	^{06 Asp tRNA}
4651929	4652008	-	80	49183039	tRNA-Met-4	-	^{16 Met tRNA}
4652033	4652128	-	96	49183039	tRNA-Ser-3	-	^{08 Ser tRNA}
4652143	4652222	-	80	49183039	tRNA-Met-1	-	^{16 Met tRNA}
4652224	4652303	-	80	49183039	tRNA-Met-5	-	^{16 Met tRNA}
4652321	4652396	-	76	49183039	tRNA-Ala-5	-	^{02 Ala tRNA}
4652409	4652485	-	77	49183039	tRNA-Pro-3	-	^{03 Pro tRNA}
4652493	4652569	-	77	49183039	tRNA-Arg-1	-	^{11 Arg tRNA}
4652570	4652661	-	92	49183039	tRNA-Leu-2	-	^{15 Leu tRNA}
4652675	4652752	-	78	49183039	tRNA-Gly-4	-	^{01 Gly tRNA}
4652779	4652862	-	84	49183039	tRNA-Leu-6	-	^{15 Leu tRNA}
4652882	4652960	-	79	49183039	tRNA-His-1	-	^{09 His tRNA}
4652967	4653045	-	79	49183039	tRNA-Thr-2	-	^{12 Thr tRNA}
4653047	4653125	-	79	49183039	tRNA-Val-2	-	^{13 Val tRNA}
4653133	4653241	-	109	49183039	rRNA-5s-11	-	5S ribosomal RNA
4653344	4656254	-	2911	49183039	rRNA-23s-11	-	23S ribosomal RNA
4656430	4657939	-	1510	49183039	rRNA-16s-11	-	16S ribosomal RNA
4868696	4868777	-	82	49183039	tRNA-Arg-4	-	^{11 Arg tRNA}
5208043	5208118	-	76	49183039	tRNA-Phe-2	-	^{17 Phe tRNA}
5208157	5208235	-	79	49183039	tRNA-Asp-2	-	^{06 Asp tRNA}
5208253	5208327	-	75	49183039	tRNA-Glu-1	-	^{04 Glu tRNA}
5208338	5208416	-	79	49183039	tRNA-Lys-5	-	^{10 Lys tRNA}