Геном прокариот/Материалы:NC 007205

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   LOCUS       NC_007205            1308759 bp    DNA     circular BCT 27-JAN-2007
   DEFINITION  Candidatus Pelagibacter ubique HTCC1062, complete genome.
   ACCESSION   NC_007205
   VERSION     NC_007205.1  GI:71082709
   KEYWORDS    .
   SOURCE      Candidatus Pelagibacter ubique HTCC1062
     ORGANISM  Candidatus Pelagibacter ubique HTCC1062
               Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; SAR11
               cluster; Candidatus Pelagibacter.
   REFERENCE   1  (bases 1 to 1308759)
     AUTHORS   Giovannoni,S.J., Bibbs,L., Cho,J.C., Stapels,M.D., Desiderio,R.,
               Vergin,K.L., Rappe,M.S., Laney,S., Wilhelm,L.J., Tripp,H.J.,
               Mathur,E.J. and Barofsky,D.F.
     TITLE     Proteorhodopsin in the ubiquitous marine bacterium SAR11
     JOURNAL   Nature 438 (7064), 82-85 (2005)
      PUBMED   16267553
   REFERENCE   2  (bases 1 to 1308759)
     AUTHORS   Giovannoni,S.J., Tripp,H.J., Givan,S., Podar,M., Vergin,K.L.,
               Baptista,D., Bibbs,L., Eads,J., Richardson,T.H., Noordewier,M.,
               Rappe,M.S., Short,J.M., Carrington,J.C. and Mathur,E.J.
     TITLE     Genome streamlining in a cosmopolitan oceanic bacterium
     JOURNAL   Science 309 (5738), 1242-1245 (2005)
      PUBMED   16109880
   REFERENCE   3  (bases 1 to 1308759)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (25-JUL-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   4  (bases 1 to 1308759)
     AUTHORS   Giovannoni,S.J., Tripp,H.J., Givan,S.A., Podar,M., Vergin,K.L.,
               Baptista,D., Bibbs,L., Eads,J., Richardson,T.H., Noordweir,M.,
               Rappe,M.S., Short,J., Carrington,J.C. and Mathur,E.J.
     TITLE     Direct Submission
     JOURNAL   Submitted (07-JUL-2005) Microbiology, Oregon State University,
               Corvallis, OR 97331, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000084.
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
41674 41750 + 77 71082709 SAR11_tRNA_r_31 - 16 Met tRNA
41817 41891 + 75 71082709 SAR11_tRNA_r_30 - 13 Val tRNA
116151 116224 + 74 71082709 SAR11_tRNA_r_29 - 05 Gln tRNA
319571 319645 + 75 71082709 SAR11_tRNA_r_28 - 01 Gly tRNA
408517 408601 + 85 71082709 SAR11_tRNA_f_0 - 15 Leu tRNA
415434 415510 + 77 71082709 SAR11_tRNA_r_27 - 11 Arg tRNA
440216 440305 + 90 71082709 SAR11_tRNA_f_1 - 08 Ser tRNA
462365 462438 + 74 71082709 SAR11_tRNA_r_26 - 12 Thr tRNA
466556 466631 + 76 71082709 SAR11_tRNA_f_2 - 17 Phe tRNA
467168 467242 + 75 71082709 SAR11_tRNA_f_3 - 09 His tRNA
511358 512831 + 1474 71082709 SAR11_16S_rRNA - 16S ribosomal RNA
512931 513007 + 77 71082709 SAR11_tRNA_f_4 - 14 Ile tRNA
513017 513092 + 76 71082709 SAR11_tRNA_f_5 - 02 Ala tRNA
513101 515997 + 2897 71082709 SAR11_23S_rRNA - 23S ribosomal RNA
564530 564648 + 119 71082709 SAR11_5S_rRNA - 5S ribosomal RNA
568432 568508 + 77 71082709 SAR11_tRNA_r_25 - 16 Met tRNA
594400 594476 + 77 71082709 SAR11_tRNA_f_6 - 11 Arg tRNA
843125 843209 + 85 71082709 SAR11_tRNA_f_7 - 15 Leu tRNA
849156 849231 + 76 71082709 SAR11_tRNA_f_8 - 13 Val tRNA
849245 849321 + 77 71082709 SAR11_tRNA_f_9 - 06 Asp tRNA
936095 936171 + 77 71082709 SAR11_tRNA_f_10 - 11 Arg tRNA
942409 942484 + 76 71082709 SAR11_tRNA_r_24 - 07 Asn tRNA
942537 942610 + 74 71082709 SAR11_tRNA_r_23 - 19 Cys tRNA
971328 971403 + 76 71082709 SAR11_tRNA_f_11 - 10 Lys tRNA
975329 975418 + 90 71082709 SAR11_tRNA_r_22 - 08 Ser tRNA
986221 986297 + 77 71082709 SAR11_tRNA_f_12 - 03 Pro tRNA
990267 990341 + 75 71082709 SAR11_tRNA_f_13 - 04 Glu tRNA
1031753 1031844 + 92 71082709 SAR11_tRNA_r_21 - 08 Ser tRNA
1085433 1085508 + 76 71082709 SAR11_tRNA_r_20 - 20 Trp tRNA
1086754 1086827 + 74 71082709 SAR11_tRNA_r_19 - 01 Gly tRNA
1086874 1086959 + 86 71082709 SAR11_tRNA_r_18 - 18 Tyr tRNA
1087868 1087943 + 76 71082709 SAR11_tRNA_f_14 - 12 Thr tRNA
1088732 1088816 + 85 71082709 SAR11_tRNA_r_17 - 15 Leu tRNA
1163196 1163277 + 82 71082709 SAR11_tRNA_r_16 - 16 Met tRNA
1166596 1166672 + 77 71082709 SAR11_tRNA_r_15 - 16 Met tRNA