Геном прокариот/Материалы:NC 007298
(перенаправлено с «Материалы:NC 007298»)
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Базовый уровень статей |
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LOCUS NC_007298 4501104 bp DNA circular BCT 04-APR-2006
DEFINITION Dechloromonas aromatica RCB, complete genome.
ACCESSION NC_007298
VERSION NC_007298.1 GI:71905642
KEYWORDS .
SOURCE Dechloromonas aromatica RCB
ORGANISM Dechloromonas aromatica RCB
Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales;
Rhodocyclaceae; Dechloromonas.
REFERENCE 1 (bases 1 to 4501104)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Di Bartolo,G.,
Trong,S., Kellar,K., Schmutz,J., Larimer,F., Land,M., Ivanova,N.
and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Dechloromonas aromatica RCB
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4501104)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (08-AUG-2005) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4501104)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Di Bartolo,G.,
Trong,S., Kellar,K., Schmutz,J., Larimer,F., Land,M., Ivanova,N.
and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (04-AUG-2005) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000089.
URL -- http://www.jgi.doe.gov
Source DNA and bacteria available from John Coates
(jcoates@micro.siu.edu)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-PGF
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
COMPLETENESS: full length.
Расположение РНК
[править]| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 76243 | 76316 | + | 74 | 71905642 | Daro_R0001 | - | 01 Gly tRNA |
| 76851 | 78380 | + | 1530 | 71905642 | Daro_R0002 | - | 16S ribosomal RNA |
| 78441 | 78517 | + | 77 | 71905642 | Daro_R0003 | - | 14 Ile tRNA |
| 78529 | 78604 | + | 76 | 71905642 | Daro_R0004 | - | 02 Ala tRNA |
| 78816 | 81698 | + | 2883 | 71905642 | Daro_R0005 | - | 23S ribosomal RNA |
| 81796 | 81909 | + | 114 | 71905642 | Daro_R0006 | - | 5S ribosomal RNA |
| 200986 | 201061 | - | 76 | 71905642 | Daro_R0007 | - | 16 Met tRNA |
| 201154 | 201229 | - | 76 | 71905642 | Daro_R0008 | - | 10 Lys tRNA |
| 201248 | 201323 | - | 76 | 71905642 | Daro_R0009 | - | 10 Lys tRNA |
| 347382 | 347466 | + | 85 | 71905642 | Daro_R0010 | - | 18 Tyr tRNA |
| 347506 | 347579 | + | 74 | 71905642 | Daro_R0011 | - | 01 Gly tRNA |
| 347610 | 347684 | + | 75 | 71905642 | Daro_R0012 | - | 12 Thr tRNA |
| 348992 | 349067 | + | 76 | 71905642 | Daro_R0013 | - | 20 Trp tRNA |
| 475156 | 475231 | + | 76 | 71905642 | Daro_R0014 | - | 17 Phe tRNA |
| 496667 | 496742 | + | 76 | 71905642 | Daro_R0015 | - | 02 Ala tRNA |
| 575391 | 575719 | + | 329 | 71905642 | Daro_R0016 | - | RNA component of RNaseP |
| 586037 | 586113 | - | 77 | 71905642 | Daro_R0017 | - | 16 Met tRNA |
| 715274 | 716803 | + | 1530 | 71905642 | Daro_R0018 | - | 16S ribosomal RNA |
| 716864 | 716940 | + | 77 | 71905642 | Daro_R0019 | - | 14 Ile tRNA |
| 716952 | 717027 | + | 76 | 71905642 | Daro_R0020 | - | 02 Ala tRNA |
| 717239 | 720121 | + | 2883 | 71905642 | Daro_R0021 | - | 23S ribosomal RNA |
| 720219 | 720332 | + | 114 | 71905642 | Daro_R0022 | - | 5S ribosomal RNA |
| 724805 | 724881 | + | 77 | 71905642 | Daro_R0023 | - | 03 Pro tRNA |
| 778283 | 778358 | + | 76 | 71905642 | Daro_R0024 | - | 12 Thr tRNA |
| 855858 | 855931 | + | 74 | 71905642 | Daro_R0025 | - | 12 Thr tRNA |
| 870227 | 870302 | + | 76 | 71905642 | Daro_R0026 | - | 16 Met tRNA |
| 870619 | 872148 | + | 1530 | 71905642 | Daro_R0027 | - | 16S ribosomal RNA |
| 872209 | 872285 | + | 77 | 71905642 | Daro_R0028 | - | 14 Ile tRNA |
| 872297 | 872372 | + | 76 | 71905642 | Daro_R0029 | - | 02 Ala tRNA |
| 872584 | 875466 | + | 2883 | 71905642 | Daro_R0030 | - | 23S ribosomal RNA |
| 875564 | 875677 | + | 114 | 71905642 | Daro_R0031 | - | 5S ribosomal RNA |
| 875842 | 875942 | + | 101 | 71905642 | Daro_R0032 | - | SRP RNA, RNA component of signal recognition particle |
| 908466 | 908540 | - | 75 | 71905642 | Daro_R0033 | - | 11 Arg tRNA |
| 925627 | 925714 | + | 88 | 71905642 | Daro_R0034 | - | 08 Ser tRNA |
| 1029310 | 1029394 | + | 85 | 71905642 | Daro_R0035 | - | 15 Leu tRNA |
| 1137633 | 1137708 | + | 76 | 71905642 | Daro_R0036 | - | 07 Asn tRNA |
| 1137715 | 1137790 | + | 76 | 71905642 | Daro_R0037 | - | 01 Gly tRNA |
| 1142712 | 1142787 | + | 76 | 71905642 | Daro_R0038 | - | 01 Gly tRNA |
| 1227775 | 1229304 | + | 1530 | 71905642 | Daro_R0039 | - | 16S ribosomal RNA |
| 1229365 | 1229441 | + | 77 | 71905642 | Daro_R0040 | - | 14 Ile tRNA |
| 1229453 | 1229528 | + | 76 | 71905642 | Daro_R0041 | - | 02 Ala tRNA |
| 1229740 | 1232622 | + | 2883 | 71905642 | Daro_R0042 | - | 23S ribosomal RNA |
| 1232720 | 1232833 | + | 114 | 71905642 | Daro_R0043 | - | 5S ribosomal RNA |
| 1413291 | 1413378 | + | 88 | 71905642 | Daro_R0044 | - | 08 Ser tRNA |
| 1437879 | 1437955 | - | 77 | 71905642 | Daro_R0045 | - | 06 Asp tRNA |
| 1437983 | 1438058 | - | 76 | 71905642 | Daro_R0046 | - | 04 Glu tRNA |
| 1438097 | 1438172 | - | 76 | 71905642 | Daro_R0047 | - | 02 Ala tRNA |
| 1438258 | 1438334 | - | 77 | 71905642 | Daro_R0048 | - | 06 Asp tRNA |
| 1438362 | 1438437 | - | 76 | 71905642 | Daro_R0049 | - | 04 Glu tRNA |
| 1438461 | 1438536 | - | 76 | 71905642 | Daro_R0050 | - | 02 Ala tRNA |
| 1440091 | 1440165 | + | 75 | 71905642 | Daro_R0051 | - | 13 Val tRNA |
| 1763155 | 1763245 | + | 91 | 71905642 | Daro_R0052 | - | 08 Ser tRNA |
| 1842121 | 1842196 | - | 76 | 71905642 | Daro_R0053 | - | 13 Val tRNA |
| 1848603 | 1848678 | + | 76 | 71905642 | Daro_R0054 | - | 09 His tRNA |
| 1943197 | 1943273 | + | 77 | 71905642 | Daro_R0055 | - | 11 Arg tRNA |
| 1943321 | 1943397 | + | 77 | 71905642 | Daro_R0056 | - | 11 Arg tRNA |
| 1944928 | 1945019 | - | 92 | 71905642 | Daro_R0057 | - | Sec tRNA |
| 2154287 | 2154362 | - | 76 | 71905642 | Daro_R0058 | - | 07 Asn tRNA |
| 2190666 | 2190741 | + | 76 | 71905642 | Daro_R0059 | - | 01 Gly tRNA |
| 2190806 | 2190879 | + | 74 | 71905642 | Daro_R0060 | - | 19 Cys tRNA |
| 2190886 | 2190961 | + | 76 | 71905642 | Daro_R0061 | - | 01 Gly tRNA |
| 2191033 | 2191118 | + | 86 | 71905642 | Daro_R0062 | - | 15 Leu tRNA |
| 2524961 | 2525037 | - | 77 | 71905642 | Daro_R0063 | - | 06 Asp tRNA |
| 2646978 | 2647054 | - | 77 | 71905642 | Daro_R0064 | - | 11 Arg tRNA |
| 2647078 | 2647154 | - | 77 | 71905642 | Daro_R0065 | - | 03 Pro tRNA |
| 2711657 | 2711749 | - | 93 | 71905642 | Daro_R0066 | - | 08 Ser tRNA |
| 2867191 | 2867267 | - | 77 | 71905642 | Daro_R0067 | - | 03 Pro tRNA |
| 2874781 | 2874857 | - | 77 | 71905642 | Daro_R0068 | - | 13 Val tRNA |
| 2897901 | 2897985 | - | 85 | 71905642 | Daro_R0069 | - | 15 Leu tRNA |
| 2954257 | 2954332 | + | 76 | 71905642 | Daro_R0070 | - | 13 Val tRNA |
| 2986099 | 2986173 | + | 75 | 71905642 | Daro_R0071 | - | 12 Thr tRNA |
| 3211321 | 3211405 | + | 85 | 71905642 | Daro_R0072 | - | 15 Leu tRNA |
| 3211576 | 3211660 | + | 85 | 71905642 | Daro_R0073 | - | 15 Leu tRNA |
| 3503826 | 3503909 | - | 84 | 71905642 | Daro_R0074 | - | 15 Leu tRNA |
| 3527925 | 3528009 | + | 85 | 71905642 | Daro_R0075 | - | 15 Leu tRNA |
| 3778248 | 3778324 | - | 77 | 71905642 | Daro_R0076 | - | 16 Met tRNA |
| 4008786 | 4008862 | + | 77 | 71905642 | Daro_R0077 | - | 05 Gln tRNA |
| 4026866 | 4026942 | - | 77 | 71905642 | Daro_R0078 | - | 11 Arg tRNA |
| 4389925 | 4390206 | - | 282 | 71905642 | Daro_R0079 | - | tmRNA |