Геном прокариот/Материалы:NC 007413

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007413            6365727 bp    DNA     circular BCT 16-JUN-2006
   DEFINITION  Anabaena variabilis ATCC 29413, complete genome.
   ACCESSION   NC_007413
   VERSION     NC_007413.1  GI:75906225
   KEYWORDS    .
   SOURCE      Anabaena variabilis ATCC 29413 (Anabaena flos-aquae UTEX 1444)
     ORGANISM  Anabaena variabilis ATCC 29413
               Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Anabaena.
   REFERENCE   1  (bases 1 to 6365727)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Saunders,E.H.,
               Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Mavrommatis,K. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Anabaena variabilis ATCC 29413
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 6365727)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (20-SEP-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 6365727)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Saunders,E.H.,
               Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Mavrommatis,K. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (12-SEP-2005) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000117.
               URL -- http://www.jgi.doe.gov
               Source DNA available from Teresa Thiel (thiel@umsl.edu)
               Bacteria available from ATCC: ATCC 29413
               Whole genome sequencing and draft assembly at JGI-PGF
               Finishing done by JGI-LANL
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
238314	238386	-	73	75906225	Ava_R0001	-	^{11 Arg tRNA}
505303	505384	+	82	75906225	Ava_R0002	-	^{15 Leu tRNA}
649912	649992	-	81	75906225	Ava_R0003	-	^{15 Leu tRNA}
906064	906140	-	77	75906225	Ava_R0004	-	^{16 Met tRNA}
977788	978168	+	381	75906225	Ava_R0005	-	RNA component of RNaseP
1002918	1004405	+	1488	75906225	Ava_R0006	-	16S ribosomal RNA
1004524	1004600	+	77	75906225	Ava_R0007	-	^{14 Ile tRNA}
1004675	1004747	+	73	75906225	Ava_R0008	-	^{02 Ala tRNA}
1004909	1007738	+	2830	75906225	Ava_R0009	-	23S ribosomal RNA
1007817	1007904	+	88	75906225	Ava_R0010	-	5S ribosomal RNA
1181925	1182011	-	87	75906225	Ava_R0011	-	^{08 Ser tRNA}
1219577	1219650	-	74	75906225	Ava_R0012	-	^{13 Val tRNA}
1424275	1424348	-	74	75906225	Ava_R0013	-	^{03 Pro tRNA}
1768581	1768664	-	84	75906225	Ava_R0014	-	^{15 Leu tRNA}
1777233	1777314	+	82	75906225	Ava_R0015	-	^{15 Leu tRNA}
1828001	1828074	+	74	75906225	Ava_R0016	-	^{03 Pro tRNA}
2133900	2133971	-	72	75906225	Ava_R0017	-	^{01 Gly tRNA}
2470889	2470973	-	85	75906225	Ava_R0018	-	^{08 Ser tRNA}
2494613	2494686	-	74	75906225	Ava_R0019	-	^{03 Pro tRNA}
2508405	2508478	-	74	75906225	Ava_R0020	-	^{16 Met tRNA}
2728122	2728193	-	72	75906225	Ava_R0021	-	^{12 Thr tRNA}
2805098	2805185	-	88	75906225	Ava_R0022	-	5S ribosomal RNA
2805264	2808093	-	2830	75906225	Ava_R0023	-	23S ribosomal RNA
2808379	2809868	-	1490	75906225	Ava_R0024	-	16S ribosomal RNA
2938911	2938983	-	73	75906225	Ava_R0025	-	^{16 Met tRNA}
3109711	3109782	+	72	75906225	Ava_R0026	-	^{07 Asn tRNA}
3123086	3123157	+	72	75906225	Ava_R0027	-	^{10 Lys tRNA}
3152762	3152834	+	73	75906225	Ava_R0028	-	^{20 Trp tRNA}
3175621	3175692	-	72	75906225	Ava_R0029	-	^{19 Cys tRNA}
3230989	3231376	+	388	75906225	Ava_R0030	-	tmRNA
3373701	3373777	-	77	75906225	Ava_R0031	-	^{11 Arg tRNA}
3497796	3497868	+	73	75906225	Ava_R0032	-	^{02 Ala tRNA}
3620822	3620894	-	73	75906225	Ava_R0033	-	^{13 Val tRNA}
3626041	3626113	-	73	75906225	Ava_R0034	-	^{09 His tRNA}
3894075	3895562	+	1488	75906225	Ava_R0035	-	16S ribosomal RNA
3895681	3895757	+	77	75906225	Ava_R0036	-	^{14 Ile tRNA}
3895832	3895904	+	73	75906225	Ava_R0037	-	^{02 Ala tRNA}
3896066	3898895	+	2830	75906225	Ava_R0038	-	23S ribosomal RNA
3898974	3899061	+	88	75906225	Ava_R0039	-	5S ribosomal RNA
3948182	3948253	+	72	75906225	Ava_R0040	-	^{12 Thr tRNA}
4023869	4023939	+	71	75906225	Ava_R0041	-	^{01 Gly tRNA}
4227295	4227368	-	74	75906225	Ava_R0042	-	^{11 Arg tRNA}
4251344	4251416	+	73	75906225	Ava_R0043	-	^{02 Ala tRNA}
4716359	4716431	-	73	75906225	Ava_R0044	-	^{02 Ala tRNA}
4743213	4743297	+	85	75906225	Ava_R0045	-	^{08 Ser tRNA}
5209413	5209484	-	72	75906225	Ava_R0046	-	^{01 Gly tRNA}
5292215	5292286	-	72	75906225	Ava_R0047	-	^{05 Gln tRNA}
5364031	5364102	+	72	75906225	Ava_R0048	-	^{10 Lys tRNA}
5432377	5432464	-	88	75906225	Ava_R0049	-	5S ribosomal RNA
5432543	5435372	-	2830	75906225	Ava_R0050	-	23S ribosomal RNA
5435534	5435606	-	73	75906225	Ava_R0051	-	^{02 Ala tRNA}
5435681	5435757	-	77	75906225	Ava_R0052	-	^{14 Ile tRNA}
5435874	5437363	-	1490	75906225	Ava_R0053	-	16S ribosomal RNA
5535659	5535760	-	102	75906225	Ava_R0054	-	SRP RNA; RNA component of signal recognitionparticle
5557813	5557885	-	73	75906225	Ava_R0055	-	^{17 Phe tRNA}
5580255	5580330	+	76	75906225	Ava_R0056	-	^{04 Glu tRNA}
5802515	5802589	+	75	75906225	Ava_R0057	-	^{07 Asn tRNA}
6024507	6024598	-	92	75906225	Ava_R0058	-	^{08 Ser tRNA}
6126002	6126075	-	74	75906225	Ava_R0059	-	^{06 Asp tRNA}
6278819	6278904	+	86	75906225	Ava_R0060	-	^{18 Tyr tRNA}
6278962	6279033	+	72	75906225	Ava_R0061	-	^{12 Thr tRNA}
6341525	6341598	-	74	75906225	Ava_R0062	-	^{11 Arg tRNA}