Геном прокариот/Материалы:NC 007513

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007513            2234828 bp    DNA     circular BCT 16-JUN-2006
   DEFINITION  Synechococcus sp. CC9902, complete genome.
   ACCESSION   NC_007513
   VERSION     NC_007513.1  GI:78183584
   KEYWORDS    .
   SOURCE      Synechococcus sp. CC9902
     ORGANISM  Synechococcus sp. CC9902
               Bacteria; Cyanobacteria; Chroococcales; Synechococcus.
   REFERENCE   1  (bases 1 to 2234828)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Martinez,M.,
               Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Synechococcus sp. CC9902
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 2234828)
     AUTHORS   .
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (27-OCT-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2234828)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Martinez,M.,
               Schmutz,J., Larimer,F., Land,M., Ivanova,N. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (08-AUG-2005) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000097.
               URL -- http://www.jgi.doe.gov
               Source DNA and bacteria available from Brian Palenik
               (bpalenik@ucsd.edu)
               Whole genome sequencing and draft assembly at JGI-PGF
               Finishing done by JGI-PGF
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
22650	22731	+	82	78183584	Syncc9902_R0001	-	^{15 Leu tRNA}
123414	123485	-	72	78183584	Syncc9902_R0045	-	^{13 Val tRNA}
169581	169651	+	71	78183584	Syncc9902_R0002	-	^{01 Gly tRNA}
182872	182944	-	73	78183584	Syncc9902_R0044	-	^{12 Thr tRNA}
354501	354573	-	73	78183584	Syncc9902_R0043	-	^{04 Glu tRNA}
373319	374797	+	1479	78183584	Syncc9902_R0046	-	16S ribosomal RNA
375574	378439	+	2866	78183584	Syncc9902_R0047	-	23S ribosomal RNA
378570	378660	+	91	78183584	Syncc9902_R0048	-	5S ribosomal RNA
430170	430246	+	77	78183584	Syncc9902_R0003	-	^{16 Met tRNA}
478028	478113	-	86	78183584	Syncc9902_R0042	-	^{15 Leu tRNA}
634879	634968	+	90	78183584	Syncc9902_R0004	-	^{08 Ser tRNA}
702893	702966	-	74	78183584	Syncc9902_R0041	-	^{16 Met tRNA}
751601	751687	+	87	78183584	Syncc9902_R0005	-	^{08 Ser tRNA}
857767	857840	+	74	78183584	Syncc9902_R0006	-	^{03 Pro tRNA}
978245	978316	+	72	78183584	Syncc9902_R0007	-	^{10 Lys tRNA}
979674	979747	+	74	78183584	Syncc9902_R0008	-	^{03 Pro tRNA}
1015386	1015459	-	74	78183584	Syncc9902_R0040	-	Xaa tRNA
1020071	1020146	-	76	78183584	Syncc9902_R0039	-	^{02 Ala tRNA}
1069388	1069474	-	87	78183584	Syncc9902_R0038	-	^{15 Leu tRNA}
1070986	1071067	+	82	78183584	Syncc9902_R0009	-	^{15 Leu tRNA}
1077198	1077270	+	73	78183584	Syncc9902_R0010	-	^{09 His tRNA}
1096080	1096166	-	87	78183584	Syncc9902_R0037	-	^{08 Ser tRNA}
1242820	1242892	+	73	78183584	Syncc9902_R0011	-	^{20 Trp tRNA}
1243384	1243457	+	74	78183584	Syncc9902_R0012	-	^{06 Asp tRNA}
1258175	1258246	+	72	78183584	Syncc9902_R0013	-	^{13 Val tRNA}
1313717	1313790	+	74	78183584	Syncc9902_R0014	-	^{11 Arg tRNA}
1345600	1345684	+	85	78183584	Syncc9902_R0015	-	^{18 Tyr tRNA}
1345692	1345763	+	72	78183584	Syncc9902_R0016	-	^{12 Thr tRNA}
1364203	1364275	-	73	78183584	Syncc9902_R0036	-	^{02 Ala tRNA}
1364285	1364358	-	74	78183584	Syncc9902_R0035	-	^{14 Ile tRNA}
1374141	1374212	+	72	78183584	Syncc9902_R0017	-	^{12 Thr tRNA}
1388393	1388465	+	73	78183584	Syncc9902_R0018	-	^{17 Phe tRNA}
1422342	1422412	-	71	78183584	Syncc9902_R0034	-	^{19 Cys tRNA}
1438223	1438296	-	74	78183584	Syncc9902_R0033	-	^{11 Arg tRNA}
1453151	1453222	-	72	78183584	Syncc9902_R0032	-	^{05 Gln tRNA}
1475004	1475092	+	89	78183584	Syncc9902_R0019	-	^{08 Ser tRNA}
1505178	1505251	-	74	78183584	Syncc9902_R0031	-	^{03 Pro tRNA}
1544208	1544280	+	73	78183584	Syncc9902_R0020	-	^{02 Ala tRNA}
1552975	1553056	-	82	78183584	Syncc9902_R0030	-	^{15 Leu tRNA}
1586069	1586142	-	74	78183584	Syncc9902_R0029	-	^{11 Arg tRNA}
1722181	1722252	-	72	78183584	Syncc9902_R0028	-	^{13 Val tRNA}
1773409	1773521	-	113	78183584	Syncc9902_R0049	-	5S ribosomal RNA
1773630	1776495	-	2866	78183584	Syncc9902_R0050	-	23S ribosomal RNA
1777273	1778730	-	1458	78183584	Syncc9902_R0051	-	16S ribosomal RNA
1859594	1859665	-	72	78183584	Syncc9902_R0027	-	^{01 Gly tRNA}
1904889	1904960	-	72	78183584	Syncc9902_R0026	-	^{01 Gly tRNA}
2008094	2008170	+	77	78183584	Syncc9902_R0021	-	^{11 Arg tRNA}
2095973	2096045	+	73	78183584	Syncc9902_R0022	-	^{16 Met tRNA}
2148696	2148767	-	72	78183584	Syncc9902_R0025	-	^{07 Asn tRNA}
2197081	2197154	+	74	78183584	Syncc9902_R0023	-	^{14 Ile tRNA}
2197164	2197236	+	73	78183584	Syncc9902_R0024	-	^{02 Ala tRNA}