Геном прокариот/Материалы:NC 007516

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007516            2510659 bp    DNA     circular BCT 16-JUN-2006
   DEFINITION  Synechococcus sp. CC9605, complete genome.
   ACCESSION   NC_007516
   VERSION     NC_007516.1  GI:78211558
   KEYWORDS    .
   SOURCE      Synechococcus sp. CC9605
     ORGANISM  Synechococcus sp. CC9605
               Bacteria; Cyanobacteria; Chroococcales; Synechococcus.
   REFERENCE   1  (bases 1 to 2510659)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Schmutz,J.,
               Martinez,M., Larimer,F., Land,M., Kyrpides,N., Ivanova,N. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Synechococcus sp. CC9605
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 2510659)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (28-OCT-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2510659)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T.,
               Hammon,N., Israni,S., Pitluck,S., Schmutz,J., Martinez,M.,
               Larimer,F., Land,M., Ivanova,N. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (27-JUL-2005) US DOE Joint Genome Institute, 2800
               Mitchell Drive, Walnut Creek, CA 94598, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000110.
               URL -- http://www.jgi.doe.gov
               Source DNA and bacteria available from Brian Palenik
               (bpalenik@ucsd.edu)
               Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-PGF
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
40886	40957	-	72	78211558	Syncc9605_R0001	-	^{01 Gly tRNA}
81036	81107	+	72	78211558	Syncc9605_R0002	-	^{01 Gly tRNA}
151785	152114	-	330	78211558	Syncc9605_R0003	-	RNA component of RNaseP
152198	152271	+	74	78211558	Syncc9605_R0004	-	^{11 Arg tRNA}
240013	240085	+	73	78211558	Syncc9605_R0005	-	Xaa tRNA
259938	260011	+	74	78211558	Syncc9605_R0006	-	^{11 Arg tRNA}
292703	292784	+	82	78211558	Syncc9605_R0007	-	^{15 Leu tRNA}
300106	300178	-	73	78211558	Syncc9605_R0008	-	^{02 Ala tRNA}
336548	336621	+	74	78211558	Syncc9605_R0009	-	^{03 Pro tRNA}
354910	354998	-	89	78211558	Syncc9605_R0010	-	^{08 Ser tRNA}
381452	381523	+	72	78211558	Syncc9605_R0011	-	^{05 Gln tRNA}
394817	394890	+	74	78211558	Syncc9605_R0012	-	^{11 Arg tRNA}
410669	410739	+	71	78211558	Syncc9605_R0013	-	^{19 Cys tRNA}
443117	443192	-	76	78211558	Syncc9605_R0014	-	^{17 Phe tRNA}
465663	465734	-	72	78211558	Syncc9605_R0015	-	^{12 Thr tRNA}
473828	475267	+	1440	78211558	Syncc9605_R0016	-	16S ribosomal RNA
475473	475546	+	74	78211558	Syncc9605_R0017	-	^{14 Ile tRNA}
475556	475628	+	73	78211558	Syncc9605_R0018	-	^{02 Ala tRNA}
476063	478928	+	2866	78211558	Syncc9605_R0019	-	23S ribosomal RNA
479041	479154	+	114	78211558	Syncc9605_R0020	-	5S ribosomal RNA
494153	494224	-	72	78211558	Syncc9605_R0021	-	^{12 Thr tRNA}
494235	494316	-	82	78211558	Syncc9605_R0022	-	^{18 Tyr tRNA}
551438	551511	-	74	78211558	Syncc9605_R0023	-	^{11 Arg tRNA}
604748	604819	-	72	78211558	Syncc9605_R0024	-	^{13 Val tRNA}
619575	619648	-	74	78211558	Syncc9605_R0025	-	^{06 Asp tRNA}
620089	620161	-	73	78211558	Syncc9605_R0026	-	^{20 Trp tRNA}
778388	778474	+	87	78211558	Syncc9605_R0027	-	^{08 Ser tRNA}
814916	815016	+	101	78211558	Syncc9605_R0028	-	SRP RNA; RNA component of signal recognition particle
822296	822368	-	73	78211558	Syncc9605_R0029	-	^{09 His tRNA}
835603	835684	-	82	78211558	Syncc9605_R0030	-	^{15 Leu tRNA}
838685	838771	+	87	78211558	Syncc9605_R0031	-	^{15 Leu tRNA}
895865	895937	+	73	78211558	Syncc9605_R0032	-	^{02 Ala tRNA}
943285	943373	-	89	78211558	Syncc9605_R0033	-	^{15 Leu tRNA}
1078026	1078099	-	74	78211558	Syncc9605_R0034	-	^{03 Pro tRNA}
1192409	1192495	-	87	78211558	Syncc9605_R0035	-	^{08 Ser tRNA}
1240721	1240794	+	74	78211558	Syncc9605_R0036	-	^{16 Met tRNA}
1315834	1315920	-	87	78211558	Syncc9605_R0037	-	^{08 Ser tRNA}
1546958	1547029	+	72	78211558	Syncc9605_R0038	-	^{10 Lys tRNA}
1548406	1548479	+	74	78211558	Syncc9605_R0039	-	^{03 Pro tRNA}
1654070	1654146	-	77	78211558	Syncc9605_R0040	-	^{16 Met tRNA}
1737787	1737859	+	73	78211558	Syncc9605_R0041	-	^{04 Glu tRNA}
1907303	1907375	+	73	78211558	Syncc9605_R0042	-	^{12 Thr tRNA}
1919692	1919762	-	71	78211558	Syncc9605_R0043	-	^{01 Gly tRNA}
1971387	1971458	+	72	78211558	Syncc9605_R0044	-	^{13 Val tRNA}
2063339	2063593	-	255	78211558	Syncc9605_R0045	-	tmRNA
2073505	2073586	-	82	78211558	Syncc9605_R0046	-	^{15 Leu tRNA}
2135706	2135819	-	114	78211558	Syncc9605_R0047	-	5S ribosomal RNA
2135932	2138797	-	2866	78211558	Syncc9605_R0048	-	23S ribosomal RNA
2139232	2139304	-	73	78211558	Syncc9605_R0049	-	^{02 Ala tRNA}
2139314	2139387	-	74	78211558	Syncc9605_R0050	-	^{14 Ile tRNA}
2139593	2141032	-	1440	78211558	Syncc9605_R0051	-	16S ribosomal RNA
2191230	2191301	+	72	78211558	Syncc9605_R0052	-	^{07 Asn tRNA}
2385485	2385555	-	71	78211558	Syncc9605_R0053	-	Xaa tRNA
2400151	2400222	-	72	78211558	Syncc9605_R0054	-	^{13 Val tRNA}