Геном прокариот/Материалы:NC 007517

Материал из Викиверситета
(перенаправлено с «Материалы:NC 007517»)
Базовый уровень статей

Выделить только проверенную информацию

Создать черновик

   LOCUS       NC_007517            3997420 bp    DNA     circular BCT 30-MAR-2007
   DEFINITION  Geobacter metallireducens GS-15, complete genome.
   ACCESSION   NC_007517
   VERSION     NC_007517.1  GI:78221228
   KEYWORDS    .
   SOURCE      Geobacter metallireducens GS-15
     ORGANISM  Geobacter metallireducens GS-15
               Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales;
               Geobacteraceae; Geobacter.
   REFERENCE   1  (bases 1 to 3997420)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Di Bartolo,G.,
               Chain,P., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N.
               and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Geobacter metallireducens GS-15
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3997420)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (28-OCT-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3997420)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Di Bartolo,G.,
               Chain,P., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N.
               and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (11-OCT-2005) US DOE Joint Genome Institute, 2400
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000148.
               URL -- http://www.jgi.doe.gov
               Source DNA and bacteria available from Derek Lovley
               (dlovley@bio.umass.edu)
               Whole genome sequencing and draft assembly at JGI-PGF
               Finishing done by JGI-PGF
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
123486 123561 + 76 78221228 Gmet_R0001 - 17 Phe tRNA
441608 441684 + 77 78221228 Gmet_R0002 - 16 Met tRNA
443850 444176 + 327 78221228 Gmet_R0003 - RNA component of RNaseP
681964 682039 + 76 78221228 Gmet_R0004 - 12 Thr tRNA
682062 682147 + 86 78221228 Gmet_R0005 - 18 Tyr tRNA
682256 682332 + 77 78221228 Gmet_R0006 - 01 Gly tRNA
682346 682421 + 76 78221228 Gmet_R0007 - 12 Thr tRNA
683935 684011 + 77 78221228 Gmet_R0008 - 20 Trp tRNA
958656 958743 + 88 78221228 Gmet_R0009 - 15 Leu tRNA
1145263 1145339 - 77 78221228 Gmet_R0010 - 11 Arg tRNA
1276464 1276561 - 98 78221228 Gmet_R0059 - Sec tRNA
1310143 1311690 + 1548 78221228 Gmet_R0011 - 16S ribosomal RNA
1311744 1311820 + 77 78221228 Gmet_R0012 - 14 Ile tRNA
1311828 1311903 + 76 78221228 Gmet_R0013 - 02 Ala tRNA
1312120 1315102 + 2983 78221228 Gmet_R0014 - 23S ribosomal RNA
1315202 1315318 + 117 78221228 Gmet_R0015 - 5S ribosomal RNA
1376436 1376522 - 87 78221228 Gmet_R0016 - 15 Leu tRNA
1471254 1471328 + 75 78221228 Gmet_R0017 - 05 Gln tRNA
1471390 1471464 + 75 78221228 Gmet_R0018 - 04 Glu tRNA
1518769 1518855 - 87 78221228 Gmet_R0019 - 15 Leu tRNA
1518981 1519056 + 76 78221228 Gmet_R0020 - 02 Ala tRNA
1579288 1579362 + 75 78221228 Gmet_R0021 - 13 Val tRNA
1586938 1587014 + 77 78221228 Gmet_R0022 - 03 Pro tRNA
1590261 1590337 + 77 78221228 Gmet_R0023 - 11 Arg tRNA
1605845 1605921 + 77 78221228 Gmet_R0024 - 16 Met tRNA
1773332 1773406 - 75 78221228 Gmet_R0025 - 13 Val tRNA
1848673 1849028 + 356 78221228 Gmet_R0026 - tmRNA
1850860 1850936 - 77 78221228 Gmet_R0027 - 11 Arg tRNA
1999409 1999483 + 75 78221228 Gmet_R0028 - 01 Gly tRNA
2084012 2084088 - 77 78221228 Gmet_R0029 - 06 Asp tRNA
2084150 2084225 - 76 78221228 Gmet_R0030 - 13 Val tRNA
2084233 2084309 - 77 78221228 Gmet_R0031 - 06 Asp tRNA
2090156 2090238 - 83 78221228 Gmet_R0032 - 15 Leu tRNA
2090298 2090374 - 77 78221228 Gmet_R0033 - 09 His tRNA
2090388 2090464 - 77 78221228 Gmet_R0034 - 11 Arg tRNA
2090470 2090547 - 78 78221228 Gmet_R0035 - 03 Pro tRNA
2107482 2107558 - 77 78221228 Gmet_R0036 - 16 Met tRNA
2177911 2177997 + 87 78221228 Gmet_R0037 - 15 Leu tRNA
2178634 2178708 - 75 78221228 Gmet_R0038 - 19 Cys tRNA
2582988 2583058 - 71 78221228 Gmet_R0039 -
2589986 2590060 - 75 78221228 Gmet_R0040 - 01 Gly tRNA
3226815 3226889 - 75 78221228 Gmet_R0041 - 05 Gln tRNA
3240983 3241100 - 118 78221228 Gmet_R0042 - 5S ribosomal RNA
3241199 3244181 - 2983 78221228 Gmet_R0043 - 16S ribosomal RNA
3244200 3244275 - 76 78221228 Gmet_R0044 - 02 Ala tRNA
3244283 3244359 - 77 78221228 Gmet_R0045 - 14 Ile tRNA
3244611 3246158 - 1548 78221228 Gmet_R0046 - 16S ribosomal RNA
3296070 3296144 + 75 78221228 Gmet_R0047 - 12 Thr tRNA
3670283 3670358 + 76 78221228 Gmet_R0048 - 10 Lys tRNA
3670409 3670486 + 78 78221228 Gmet_R0049 - 04 Glu tRNA
3690064 3690139 + 76 78221228 Gmet_R0050 - 02 Ala tRNA
3811323 3811399 - 77 78221228 Gmet_R0051 - 03 Pro tRNA
3840934 3841043 - 110 78221228 Gmet_R0052 - SRP RNA; RNA component of signal recognition particle
3841036 3841123 - 88 78221228 Gmet_R0053 - 08 Ser tRNA
3861510 3861599 + 90 78221228 Gmet_R0054 - 08 Ser tRNA
3910770 3910845 + 76 78221228 Gmet_R0055 - 07 Asn tRNA
3958841 3958917 - 77 78221228 Gmet_R0056 - 11 Arg tRNA
3959466 3959558 - 93 78221228 Gmet_R0057 - 08 Ser tRNA
3959579 3959664 - 86 78221228 Gmet_R0058 - 08 Ser tRNA