Геном прокариот/Материалы:NC 007575

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   LOCUS       NC_007575            2201561 bp    DNA     circular BCT 04-APR-2006
   DEFINITION  Thiomicrospira denitrificans ATCC 33889, complete genome.
   ACCESSION   NC_007575
   VERSION     NC_007575.1  GI:78776201
   KEYWORDS    .
   SOURCE      Thiomicrospira denitrificans ATCC 33889
     ORGANISM  Thiomicrospira denitrificans ATCC 33889
               Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
               Helicobacteraceae.
   REFERENCE   1  (bases 1 to 2201561)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Kyrpides,N., Lykidis,A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Thiomicrospira denitrificans ATCC 33889
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 2201561)
     AUTHORS   .
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (03-NOV-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2201561)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Kyrpides,N., Lykidis,A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (11-OCT-2005) US DOE Joint Genome Institute, 2400
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000153.
               URL -- http://www.jgi.doe.gov
               Source DNA available from Kathleen Scott
               (kscott@choma1.cas.usf.edu)
               Bacteria available from ATCC: ATCC 33889
               Whole genome sequencing and draft assembly at JGI-PGF
               Finishing done by JGI-LLNL
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
48708 48796 + 89 78776201 Tmden_R0001 - 08 Ser tRNA
68810 68898 - 89 78776201 Tmden_R0002 - 08 Ser tRNA
68928 69001 - 74 78776201 Tmden_R0003 - 19 Cys tRNA
69027 69113 - 87 78776201 Tmden_R0004 - 15 Leu tRNA
69162 69236 - 75 78776201 Tmden_R0005 - 01 Gly tRNA
209647 209757 + 111 78776201 Tmden_R0006 - SRP RNA; RNA component of signal recognition particle
231140 231217 + 78 78776201 Tmden_R0007 - 03 Pro tRNA
231241 231317 + 77 78776201 Tmden_R0008 - 09 His tRNA
231360 231436 + 77 78776201 Tmden_R0009 - 11 Arg tRNA
231452 231528 + 77 78776201 Tmden_R0010 - 11 Arg tRNA
231550 231633 + 84 78776201 Tmden_R0011 - 15 Leu tRNA
342504 342580 + 77 78776201 Tmden_R0012 - 12 Thr tRNA
342635 342719 + 85 78776201 Tmden_R0013 - 18 Tyr tRNA
342733 342809 + 77 78776201 Tmden_R0014 - 01 Gly tRNA
342965 343039 + 75 78776201 Tmden_R0015 - 12 Thr tRNA
344581 344657 + 77 78776201 Tmden_R0016 - 20 Trp tRNA
432364 432447 + 84 78776201 Tmden_R0017 - 15 Leu tRNA
453120 454567 + 1448 78776201 Tmden_R0018 - 16S ribosomal RNA
454740 454815 + 76 78776201 Tmden_R0019 - 02 Ala tRNA
455114 457997 + 2884 78776201 Tmden_R0020 - 23S ribosomal RNA
458180 458295 + 116 78776201 Tmden_R0021 - 5S ribosomal RNA
576631 578078 + 1448 78776201 Tmden_R0022 - 16S ribosomal RNA
578251 578326 + 76 78776201 Tmden_R0023 - 02 Ala tRNA
578625 581509 + 2885 78776201 Tmden_R0024 - 23S ribosomal RNA
581655 581770 + 116 78776201 Tmden_R0025 - 5S ribosomal RNA
643899 643975 + 77 78776201 Tmden_R0026 - 16 Met tRNA
643990 644064 + 75 78776201 Tmden_R0027 - 07 Asn tRNA
644314 644388 - 75 78776201 Tmden_R0028 - 07 Asn tRNA
659518 659592 - 75 78776201 Tmden_R0029 - 04 Glu tRNA
659615 659690 - 76 78776201 Tmden_R0030 - 10 Lys tRNA
725079 726526 + 1448 78776201 Tmden_R0031 - 16S ribosomal RNA
726699 726774 + 76 78776201 Tmden_R0032 - 02 Ala tRNA
727073 729956 + 2884 78776201 Tmden_R0033 - 23S ribosomal RNA
730139 730254 + 116 78776201 Tmden_R0034 - 5S ribosomal RNA
810425 810500 + 76 78776201 Tmden_R0035 - 10 Lys tRNA
810514 810590 + 77 78776201 Tmden_R0036 - 06 Asp tRNA
810608 810683 + 76 78776201 Tmden_R0037 - 13 Val tRNA
810710 810785 + 76 78776201 Tmden_R0038 - 04 Glu tRNA
810817 810892 + 76 78776201 Tmden_R0039 - 13 Val tRNA
811014 811090 + 77 78776201 Tmden_R0040 - 06 Asp tRNA
830401 830477 + 77 78776201 Tmden_R0041 - 16 Met tRNA
1091865 1091948 - 84 78776201 Tmden_R0042 - 15 Leu tRNA
1121471 1121763 + 293 78776201 Tmden_R0043 - RNA component of RNaseP
1123303 1123377 + 75 78776201 Tmden_R0044 - 04 Glu tRNA
1247908 1247984 + 77 78776201 Tmden_R0045 - 16 Met tRNA
1248003 1248077 + 75 78776201 Tmden_R0046 - 05 Gln tRNA
1248101 1248177 + 77 78776201 Tmden_R0047 - 16 Met tRNA
1269325 1269398 + 74 78776201 Tmden_R0048 - 05 Gln tRNA
1516998 1517087 - 90 78776201 Tmden_R0049 - 08 Ser tRNA
1697755 1697830 + 76 78776201 Tmden_R0050 - 17 Phe tRNA
1697966 1698041 + 76 78776201 Tmden_R0051 - 17 Phe tRNA
1717112 1717494 + 383 78776201 Tmden_R0052 - tmRNA
1764023 1764099 - 77 78776201 Tmden_R0053 - 11 Arg tRNA
1778103 1778178 + 76 78776201 Tmden_R0054 - 13 Val tRNA
1791908 1791984 + 77 78776201 Tmden_R0055 - 12 Thr tRNA
2141020 2141135 - 116 78776201 Tmden_R0056 - 5S ribosomal RNA
2141318 2144201 - 2884 78776201 Tmden_R0057 - 23S ribosomal RNA
2144484 2144560 - 77 78776201 Tmden_R0058 - 14 Ile tRNA
2144733 2146180 - 1448 78776201 Tmden_R0059 - 16S ribosomal RNA