Геном прокариот/Материалы:NC 007575
(перенаправлено с «Материалы:NC 007575»)
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Базовый уровень статей |
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LOCUS NC_007575 2201561 bp DNA circular BCT 04-APR-2006
DEFINITION Thiomicrospira denitrificans ATCC 33889, complete genome.
ACCESSION NC_007575
VERSION NC_007575.1 GI:78776201
KEYWORDS .
SOURCE Thiomicrospira denitrificans ATCC 33889
ORGANISM Thiomicrospira denitrificans ATCC 33889
Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
Helicobacteraceae.
REFERENCE 1 (bases 1 to 2201561)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
Kyrpides,N., Lykidis,A. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Thiomicrospira denitrificans ATCC 33889
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2201561)
AUTHORS .
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2005) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2201561)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
Kyrpides,N., Lykidis,A. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (11-OCT-2005) US DOE Joint Genome Institute, 2400
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000153.
URL -- http://www.jgi.doe.gov
Source DNA available from Kathleen Scott
(kscott@choma1.cas.usf.edu)
Bacteria available from ATCC: ATCC 33889
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LLNL
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
COMPLETENESS: full length.
Расположение РНК
[править]| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 48708 | 48796 | + | 89 | 78776201 | Tmden_R0001 | - | 08 Ser tRNA |
| 68810 | 68898 | - | 89 | 78776201 | Tmden_R0002 | - | 08 Ser tRNA |
| 68928 | 69001 | - | 74 | 78776201 | Tmden_R0003 | - | 19 Cys tRNA |
| 69027 | 69113 | - | 87 | 78776201 | Tmden_R0004 | - | 15 Leu tRNA |
| 69162 | 69236 | - | 75 | 78776201 | Tmden_R0005 | - | 01 Gly tRNA |
| 209647 | 209757 | + | 111 | 78776201 | Tmden_R0006 | - | SRP RNA; RNA component of signal recognition particle |
| 231140 | 231217 | + | 78 | 78776201 | Tmden_R0007 | - | 03 Pro tRNA |
| 231241 | 231317 | + | 77 | 78776201 | Tmden_R0008 | - | 09 His tRNA |
| 231360 | 231436 | + | 77 | 78776201 | Tmden_R0009 | - | 11 Arg tRNA |
| 231452 | 231528 | + | 77 | 78776201 | Tmden_R0010 | - | 11 Arg tRNA |
| 231550 | 231633 | + | 84 | 78776201 | Tmden_R0011 | - | 15 Leu tRNA |
| 342504 | 342580 | + | 77 | 78776201 | Tmden_R0012 | - | 12 Thr tRNA |
| 342635 | 342719 | + | 85 | 78776201 | Tmden_R0013 | - | 18 Tyr tRNA |
| 342733 | 342809 | + | 77 | 78776201 | Tmden_R0014 | - | 01 Gly tRNA |
| 342965 | 343039 | + | 75 | 78776201 | Tmden_R0015 | - | 12 Thr tRNA |
| 344581 | 344657 | + | 77 | 78776201 | Tmden_R0016 | - | 20 Trp tRNA |
| 432364 | 432447 | + | 84 | 78776201 | Tmden_R0017 | - | 15 Leu tRNA |
| 453120 | 454567 | + | 1448 | 78776201 | Tmden_R0018 | - | 16S ribosomal RNA |
| 454740 | 454815 | + | 76 | 78776201 | Tmden_R0019 | - | 02 Ala tRNA |
| 455114 | 457997 | + | 2884 | 78776201 | Tmden_R0020 | - | 23S ribosomal RNA |
| 458180 | 458295 | + | 116 | 78776201 | Tmden_R0021 | - | 5S ribosomal RNA |
| 576631 | 578078 | + | 1448 | 78776201 | Tmden_R0022 | - | 16S ribosomal RNA |
| 578251 | 578326 | + | 76 | 78776201 | Tmden_R0023 | - | 02 Ala tRNA |
| 578625 | 581509 | + | 2885 | 78776201 | Tmden_R0024 | - | 23S ribosomal RNA |
| 581655 | 581770 | + | 116 | 78776201 | Tmden_R0025 | - | 5S ribosomal RNA |
| 643899 | 643975 | + | 77 | 78776201 | Tmden_R0026 | - | 16 Met tRNA |
| 643990 | 644064 | + | 75 | 78776201 | Tmden_R0027 | - | 07 Asn tRNA |
| 644314 | 644388 | - | 75 | 78776201 | Tmden_R0028 | - | 07 Asn tRNA |
| 659518 | 659592 | - | 75 | 78776201 | Tmden_R0029 | - | 04 Glu tRNA |
| 659615 | 659690 | - | 76 | 78776201 | Tmden_R0030 | - | 10 Lys tRNA |
| 725079 | 726526 | + | 1448 | 78776201 | Tmden_R0031 | - | 16S ribosomal RNA |
| 726699 | 726774 | + | 76 | 78776201 | Tmden_R0032 | - | 02 Ala tRNA |
| 727073 | 729956 | + | 2884 | 78776201 | Tmden_R0033 | - | 23S ribosomal RNA |
| 730139 | 730254 | + | 116 | 78776201 | Tmden_R0034 | - | 5S ribosomal RNA |
| 810425 | 810500 | + | 76 | 78776201 | Tmden_R0035 | - | 10 Lys tRNA |
| 810514 | 810590 | + | 77 | 78776201 | Tmden_R0036 | - | 06 Asp tRNA |
| 810608 | 810683 | + | 76 | 78776201 | Tmden_R0037 | - | 13 Val tRNA |
| 810710 | 810785 | + | 76 | 78776201 | Tmden_R0038 | - | 04 Glu tRNA |
| 810817 | 810892 | + | 76 | 78776201 | Tmden_R0039 | - | 13 Val tRNA |
| 811014 | 811090 | + | 77 | 78776201 | Tmden_R0040 | - | 06 Asp tRNA |
| 830401 | 830477 | + | 77 | 78776201 | Tmden_R0041 | - | 16 Met tRNA |
| 1091865 | 1091948 | - | 84 | 78776201 | Tmden_R0042 | - | 15 Leu tRNA |
| 1121471 | 1121763 | + | 293 | 78776201 | Tmden_R0043 | - | RNA component of RNaseP |
| 1123303 | 1123377 | + | 75 | 78776201 | Tmden_R0044 | - | 04 Glu tRNA |
| 1247908 | 1247984 | + | 77 | 78776201 | Tmden_R0045 | - | 16 Met tRNA |
| 1248003 | 1248077 | + | 75 | 78776201 | Tmden_R0046 | - | 05 Gln tRNA |
| 1248101 | 1248177 | + | 77 | 78776201 | Tmden_R0047 | - | 16 Met tRNA |
| 1269325 | 1269398 | + | 74 | 78776201 | Tmden_R0048 | - | 05 Gln tRNA |
| 1516998 | 1517087 | - | 90 | 78776201 | Tmden_R0049 | - | 08 Ser tRNA |
| 1697755 | 1697830 | + | 76 | 78776201 | Tmden_R0050 | - | 17 Phe tRNA |
| 1697966 | 1698041 | + | 76 | 78776201 | Tmden_R0051 | - | 17 Phe tRNA |
| 1717112 | 1717494 | + | 383 | 78776201 | Tmden_R0052 | - | tmRNA |
| 1764023 | 1764099 | - | 77 | 78776201 | Tmden_R0053 | - | 11 Arg tRNA |
| 1778103 | 1778178 | + | 76 | 78776201 | Tmden_R0054 | - | 13 Val tRNA |
| 1791908 | 1791984 | + | 77 | 78776201 | Tmden_R0055 | - | 12 Thr tRNA |
| 2141020 | 2141135 | - | 116 | 78776201 | Tmden_R0056 | - | 5S ribosomal RNA |
| 2141318 | 2144201 | - | 2884 | 78776201 | Tmden_R0057 | - | 23S ribosomal RNA |
| 2144484 | 2144560 | - | 77 | 78776201 | Tmden_R0058 | - | 14 Ile tRNA |
| 2144733 | 2146180 | - | 1448 | 78776201 | Tmden_R0059 | - | 16S ribosomal RNA |