Геном прокариот/Материалы:NC 007777

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_007777            5433628 bp    DNA     circular BCT 26-FEB-2007
   DEFINITION  Frankia sp. CcI3, complete genome.
   ACCESSION   NC_007777
   VERSION     NC_007777.1  GI:86738724
   KEYWORDS    .
   SOURCE      Frankia sp. CcI3
     ORGANISM  Frankia sp. CcI3
               Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
               Frankineae; Frankiaceae; Frankia.
   REFERENCE   1  (bases 1 to 5433628)
     AUTHORS   Normand,P., Lapierre,P., Tisa,L.S., Gogarten,J.P., Alloisio,N.,
               Bagnarol,E., Bassi,C.A., Berry,A.M., Bickhart,D.M., Choisne,N.,
               Couloux,A., Cournoyer,B., Cruveiller,S., Daubin,V., Demange,N.,
               Francino,M.P., Goltsman,E., Huang,Y., Kopp,O.R., Labarre,L.,
               Lapidus,A., Lavire,C., Marechal,J., Martinez,M., Mastronunzio,J.E.,
               Mullin,B.C., Niemann,J., Pujic,P., Rawnsley,T., Rouy,Z.,
               Schenowitz,C., Sellstedt,A., Tavares,F., Tomkins,J.P., Vallenet,D.,
               Valverde,C., Wall,L.G., Wang,Y., Medigue,C. and Benson,D.R.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Genome characteristics of facultatively symbiotic Frankia sp.
               strains reflect host range and host plant biogeography
     JOURNAL   Genome Res. 17 (1), 7-15 (2007)
      PUBMED   17151343
   REFERENCE   2  (bases 1 to 5433628)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (07-FEB-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5433628)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E.,
               Martinez,M., Schmutz,J., Larimer,F., Land,M., Kyrpides,N.,
               Lykidis,A., Francino,P., Benson,D.R., Huang,Y., Mastronunzio,J.,
               Bickhart,D., Niemann,J., Rawnsley,T., Tisa,L.S. and Richardson,P.
     TITLE     Direct Submission
     JOURNAL   Submitted (19-JAN-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000249.
               URL -- http://www.jgi.doe.gov
               Source DNA and bacteria available from Louis Tisa
               (lst@patia.unh.edu)
               Contact: Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-PGF
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
12560	12633	+	74	86738724	Francci3_R0001	-	^{14 Ile tRNA}
123014	123089	+	76	86738724	Francci3_R0002	-	^{04 Glu tRNA}
139982	140056	+	75	86738724	Francci3_R0003	-	^{06 Asp tRNA}
140109	140185	+	77	86738724	Francci3_R0004	-	^{17 Phe tRNA}
159228	159301	+	74	86738724	Francci3_R0005	-	Xaa tRNA
312022	312113	-	92	86738724	Francci3_R0006	-	SRP RNA; RNA component of signal recognition particle
312223	312310	+	88	86738724	Francci3_R0007	-	^{08 Ser tRNA}
325308	325397	-	90	86738724	Francci3_R0008	-	^{08 Ser tRNA}
331492	331660	-	169	86738724	Francci3_R0009	-
455994	456011	+	18	86738724	Francci3_R0010	-
479516	479588	-	73	86738724	Francci3_R0011	-	^{11 Arg tRNA}
498597	498687	-	91	86738724	Francci3_R0012	-	^{08 Ser tRNA}
506116	506188	+	73	86738724	Francci3_R0013	-	^{11 Arg tRNA}
650716	650800	+	85	86738724	Francci3_R0014	-	^{18 Tyr tRNA}
654669	654744	+	76	86738724	Francci3_R0015	-	^{12 Thr tRNA}
654844	654920	+	77	86738724	Francci3_R0016	-	^{16 Met tRNA}
657974	658046	+	73	86738724	Francci3_R0017	-	^{20 Trp tRNA}
1055014	1055097	-	84	86738724	Francci3_R0018	-	^{15 Leu tRNA}
1193833	1193908	+	76	86738724	Francci3_R0019	-
1225981	1226056	-	76	86738724	Francci3_R0020	-	^{10 Lys tRNA}
1235918	1235993	-	76	86738724	Francci3_R0021	-	^{09 His tRNA}
1359186	1359258	-	73	86738724	Francci3_R0022	-	^{11 Arg tRNA}
1436620	1436693	-	74	86738724	Francci3_R0023	-	^{01 Gly tRNA}
1436741	1436816	+	76	86738724	Francci3_R0024	-	^{03 Pro tRNA}
1478719	1478795	+	77	86738724	Francci3_R0025	-	^{02 Ala tRNA}
1630709	1630783	-	75	86738724	Francci3_R0026	-	^{13 Val tRNA}
1630797	1630868	-	72	86738724	Francci3_R0027	-	^{19 Cys tRNA}
1630912	1630984	-	73	86738724	Francci3_R0028	-	^{01 Gly tRNA}
1633415	1633486	+	72	86738724	Francci3_R0029	-	^{13 Val tRNA}
1734780	1735088	-	309	86738724	Francci3_R0030	-	RNA component of RNaseP
1750296	1750369	-	74	86738724	Francci3_R0031	-	^{03 Pro tRNA}
1941005	1941080	-	76	86738724	Francci3_R0032	-	^{15 Leu tRNA}
2386761	2386845	+	85	86738724	Francci3_R0033	-	^{15 Leu tRNA}
3017451	3017526	+	76	86738724	Francci3_R0034	-
3540383	3540549	-	167	86738724	Francci3_R0035	-
3619318	3619389	-	72	86738724	Francci3_R0036	-	^{13 Val tRNA}
3645050	3645163	-	114	86738724	Francci3_R0037	-
3747925	3748041	-	117	86738724	Francci3_R0038	-	5S ribosomal RNA
3748112	3751216	-	3105	86738724	Francci3_R0039	-	23S ribosomal RNA
3751629	3753140	-	1512	86738724	Francci3_R0040	-	16S ribosomal RNA
3777396	3777525	-	130	86738724	Francci3_R0041	-
3816293	3816365	+	73	86738724	Francci3_R0042	-	^{07 Asn tRNA}
4032685	4032761	-	77	86738724	Francci3_R0043	-	^{16 Met tRNA}
4330689	4330761	-	73	86738724	Francci3_R0044	-	^{04 Glu tRNA}
4330869	4330940	-	72	86738724	Francci3_R0045	-	^{05 Gln tRNA}
4365755	4365871	-	117	86738724	Francci3_R0046	-	5S ribosomal RNA
4365942	4369046	-	3105	86738724	Francci3_R0047	-	23S ribosomal RNA
4369459	4370970	-	1512	86738724	Francci3_R0048	-	16S ribosomal RNA
4463891	4463962	+	72	86738724	Francci3_R0049	-	^{11 Arg tRNA}
4465283	4465358	-	76	86738724	Francci3_R0050	-
4530150	4530226	-	77	86738724	Francci3_R0051	-	^{16 Met tRNA}
4685233	4685310	-	78	86738724	Francci3_R0052	-	^{15 Leu tRNA}
4739936	4740007	+	72	86738724	Francci3_R0053	-	^{05 Gln tRNA}
4772991	4773067	+	77	86738724	Francci3_R0054	-	^{02 Ala tRNA}
4868061	4868187	-	127	86738724	Francci3_R0055	-
4868188	4868279	-	92	86738724	Francci3_R0056	-
4886215	4886290	+	76	86738724	Francci3_R0057	-	^{12 Thr tRNA}
4924264	4924339	-	76	86738724	Francci3_R0058	-
5039206	5039304	+	99	86738724	Francci3_R0059	-
5067454	5067607	+	154	86738724	Francci3_R0060	-
5104095	5104171	-	77	86738724	Francci3_R0061	-	^{03 Pro tRNA}
5148262	5148333	+	72	86738724	Francci3_R0062	-	^{12 Thr tRNA}
5171614	5171702	-	89	86738724	Francci3_R0063	-	^{08 Ser tRNA}
5180002	5180074	+	73	86738724	Francci3_R0064	-	^{10 Lys tRNA}
5188571	5188644	-	74	86738724	Francci3_R0065	-	^{01 Gly tRNA}
5213920	5214154	+	235	86738724	Francci3_R0066	-
5215315	5215501	+	187	86738724	Francci3_R0067	-
5255171	5255287	+	117	86738724	Francci3_R0068	-
5295134	5295216	-	83	86738724	Francci3_R0069	-	^{15 Leu tRNA}
5380134	5380206	-	73	86738724	Francci3_R0070	-	^{02 Ala tRNA}