Геном прокариот/Материалы:NC 008146

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   LOCUS       NC_008146            5705448 bp    DNA     circular BCT 13-JUN-2006
   DEFINITION  Mycobacterium sp. MCS, complete genome.
   ACCESSION   NC_008146
   VERSION     NC_008146.1  GI:108796981
   KEYWORDS    .
   SOURCE      Mycobacterium sp. MCS
     ORGANISM  Mycobacterium sp. MCS
               Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
               Corynebacterineae; Mycobacteriaceae; Mycobacterium.
   REFERENCE   1  (bases 1 to 5705448)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Martinez,M., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Kim,E., Miller,C.D., Hughes,J.E., Anderson,A.J.,
               Sims,R.C. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Mycobacterium sp. MCS
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5705448)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (12-JUN-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5705448)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Martinez,M., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Kim,E., Miller,C.D., Hughes,J.E., Anderson,A.J.,
               Sims,R.C. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (05-JUN-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000384.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000380
               Source DNA and bacteria available from Charles Miller
               (cdmiller@biology.usu.edu)
               Contacts: Charles Miller (cdmiller@biology.usu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
12992 13065 + 74 108796981 Mmcs_R0001 - 14 Ile tRNA
13227 13299 + 73 108796981 Mmcs_R0002 - 02 Ala tRNA
26655 26737 + 83 108796981 Mmcs_R0003 - 15 Leu tRNA
477516 477589 - 74 108796981 Mmcs_R0004 - 01 Gly tRNA
604137 604253 + 117 108796981 Mmcs_R0005 -
832510 832595 + 86 108796981 Mmcs_R0006 - 18 Tyr tRNA
1015539 1015611 + 73 108796981 Mmcs_R0007 - 12 Thr tRNA
1015643 1015716 + 74 108796981 Mmcs_R0008 - 16 Met tRNA
1017559 1017634 + 76 108796981 Mmcs_R0009 - 20 Trp tRNA
1540869 1540945 + 77 108796981 Mmcs_R0010 - 16 Met tRNA
1752755 1753121 + 367 108796981 Mmcs_R0011 - tmRNA
1867112 1867184 + 73 108796981 Mmcs_R0012 - 02 Ala tRNA
2065412 2065483 + 72 108796981 Mmcs_R0013 - 05 Gln tRNA
2065546 2065618 + 73 108796981 Mmcs_R0014 - 04 Glu tRNA
2366794 2366868 - 75 108796981 Mmcs_R0015 - 13 Val tRNA
2366882 2366955 - 74 108796981 Mmcs_R0016 - 19 Cys tRNA
2366979 2367054 - 76 108796981 Mmcs_R0017 - 01 Gly tRNA
2367306 2367380 + 75 108796981 Mmcs_R0018 - 13 Val tRNA
3007130 3007254 - 125 108796981 Mmcs_R0019 -
3007258 3007351 - 94 108796981 Mmcs_R0020 -
3080231 3080304 - 74 108796981 Mmcs_R0021 - 03 Pro tRNA
3113186 3113299 - 114 108796981 Mmcs_R0022 - 5S ribosomal RNA
3113411 3116556 - 3146 108796981 Mmcs_R0023 - 23S ribosomal RNA
3116983 3118497 - 1515 108796981 Mmcs_R0024 - 16S ribosomal RNA
3169690 3169760 - 71 108796981 Mmcs_R0025 - 19 Cys tRNA
3193256 3193332 + 77 108796981 Mmcs_R0026 - 15 Leu tRNA
3355856 3355941 + 86 108796981 Mmcs_R0027 - 15 Leu tRNA
3369759 3369838 + 80 108796981 Mmcs_R0028 - 10 Lys tRNA
3536921 3537238 - 318 108796981 Mmcs_R0029 - RNA component of RNaseP
3559049 3559120 - 72 108796981 Mmcs_R0030 - 13 Val tRNA
3635822 3635898 - 77 108796981 Mmcs_R0031 - 16 Met tRNA
3651085 3651157 - 73 108796981 Mmcs_R0032 - 07 Asn tRNA
3812406 3812482 - 77 108796981 Mmcs_R0033 - 03 Pro tRNA
3812623 3812696 + 74 108796981 Mmcs_R0034 - 01 Gly tRNA
3866285 3866357 + 73 108796981 Mmcs_R0035 - 11 Arg tRNA
3886840 3886915 + 76 108796981 Mmcs_R0036 - 09 His tRNA
3888350 3888425 + 76 108796981 Mmcs_R0037 - 10 Lys tRNA
4085685 4085768 - 84 108796981 Mmcs_R0038 - 15 Leu tRNA
4120121 4120234 - 114 108796981 Mmcs_R0039 - 5S ribosomal RNA
4120334 4123496 - 3163 108796981 Mmcs_R0040 - 23S ribosomal RNA
4123929 4125443 - 1515 108796981 Mmcs_R0041 - 16S ribosomal RNA
4152976 4153051 + 76 108796981 Mmcs_R0042 - 11 Arg tRNA
4479495 4479568 - 74 108796981 Mmcs_R0043 - 15 Leu tRNA
4514027 4514101 + 75 108796981 Mmcs_R0044 - 05 Gln tRNA
4554754 4554826 - 73 108796981 Mmcs_R0045 - 02 Ala tRNA
4656985 4657057 + 73 108796981 Mmcs_R0046 - 11 Arg tRNA
4757559 4757743 + 185 108796981 Mmcs_R0047 -
4785219 4785295 - 77 108796981 Mmcs_R0048 - 17 Phe tRNA
4785338 4785414 - 77 108796981 Mmcs_R0049 - 06 Asp tRNA
4785448 4785520 - 73 108796981 Mmcs_R0050 - 04 Glu tRNA
4785641 4785716 + 76 108796981 Mmcs_R0051 - 10 Lys tRNA
4867059 4867133 + 75 108796981 Mmcs_R0052 - 12 Thr tRNA
5075648 5075720 - 73 108796981 Mmcs_R0053 - 12 Thr tRNA
5111635 5111708 + 74 108796981 Mmcs_R0054 - 03 Pro tRNA
5201177 5201262 + 86 108796981 Mmcs_R0055 - 08 Ser tRNA
5251756 5251846 - 91 108796981 Mmcs_R0056 - 08 Ser tRNA
5269941 5270013 - 73 108796981 Mmcs_R0057 - 11 Arg tRNA
5270052 5270143 - 92 108796981 Mmcs_R0058 - 08 Ser tRNA
5273558 5273644 - 87 108796981 Mmcs_R0059 - 08 Ser tRNA
5344256 5344359 + 104 108796981 Mmcs_R0060 -
5501874 5501968 + 95 108796981 Mmcs_R0061 - Sec tRNA